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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058894 ID=TCONS_00058894|Name=TCONS_00058894|organism=Clytia hemisphaerica|type=transcript|length=4528bpRun BLAST on NCBI protein sequence of TCONS_00058894-protein >TCONS_00058894-protein ID=TCONS_00058894-protein|Name=TCONS_00058894-protein|organism=Clytia hemisphaerica|type=polypeptide|length=972bp MDIKFHVNKIIDNGGKIGDWTLFVDQLKEKKYDRDLLVQVLTIALNNSTERun BLAST on NCBI transcript from alignment at scaffold_314:459320..473355- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058894 ID=TCONS_00058894|Name=TCONS_00058894|organism=Clytia hemisphaerica|type=transcript|length=14036bp|location=Sequence derived from alignment at scaffold_314:459320..473355- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_314:459320..473355- >TCONS_00058894 ID=TCONS_00058894|Name=TCONS_00058894|organism=Clytia hemisphaerica|type=CDS|length=23352bp|location=Sequence derived from alignment at scaffold_314:459320..473355- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058894 vs. Swiss-Prot (Human)
Match: TTK (Dual specificity protein kinase TTK OS=Homo sapiens GN=TTK PE=1 SV=2) HSP 1 Score: 229.565 bits (584), Expect = 9.925e-62 Identity = 124/281 (44.13%), Postives = 183/281 (65.12%), Query Frame = 3
Query: 3153 SDSRFIKINGRPYTRVKKIARGGFCKVYEVANGEGVLFALKKVNLDELDSFMIDCHLNEIELLTKLRGNP-FIITLYDWEKTDESLLLLMEEGDQDLAKTLRKYTGKVPMDKVQQYWEQMLQAVKIVHDQGIVHADLKPANFLFVGTALKLIDFGISNSLQSDKTSITRECVMGTLNYMPPEALSP-DASHENG--ASRISRASDVWSLGCMLYLMIFRRTPYQHLTNRV-KIHQAIRVGQNINYEGIEDPVLLDCLQGCLNFNKRQRYTIEQLLQHPFLK 3980
S + I + GR Y+ +K+I GG KV++V N + ++A+K VNL+E D+ +D + NEI L KL+ + II LYD+E TD+ + ++ME G+ DL L+K P ++ + YW+ ML+AV +H GIVH+DLKPANFL V LKLIDFGI+N +Q D TS+ ++ +GT+NYMPPEA+ +S ENG S+IS SDVWSLGC+LY M + +TP+Q + N++ K+H I I + I + L D L+ CL + +QR +I +LL HP+++
Sbjct: 513 SANECISVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVMECGNIDLNSWLKKKKSIDPWER-KSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNHEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQ 792 The following BLAST results are available for this feature:
BLAST of TCONS_00058894 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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