TCONS_00058897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058897
Unique NameTCONS_00058897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length538

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058897 ID=TCONS_00058897|Name=TCONS_00058897|organism=Clytia hemisphaerica|type=transcript|length=538bp
GCCTAATCTCGTACAGGtctaataaaattgacgttatgaAAGATAAAGAA
TATGAAAATACTGGatgttcaattttattttcacaaATAGTACATCTGAC
CCGTCATGAACACATCTCAAAAGGTCTTGTAATTTTGTAAGTATTGTTGA
TTATGAAACATTAATAAATAGAATacctcaaaatcaaaatccgaacaaca
aaaataaaatatcaacaaaactaATAGTCTGtattaataaaaatttctaa
catcatttatttattatttgtaTACTATTACAGTACCATAATGGCTTGTC
TTGGCACAACAAATAATGATCTCTCCATTTAAAACCTTCCAATGTTAGGT
TATTGTAAGTACCTTCTACTATTCCAAAGAACTGAACCACTCGGAACGCC
GAGCTCTCCTTTGCATCTAATAACAAATGAAGAGGGATTTCAAATTGTAT
TTCTTGACCACAATGTTAATTATACAAGCGGTCACGTTTTGACATCAGCC
CTGTTGACTCGCGTTAGACCTTCATTGAATCCAGAATA
Run BLAST on NCBI

transcript from alignment at scaffold_314:496019..496629-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058897 ID=TCONS_00058897|Name=TCONS_00058897|organism=Clytia hemisphaerica|type=transcript|length=611bp|location=Sequence derived from alignment at scaffold_314:496019..496629- (Clytia hemisphaerica)
GCCTAATCTCGTACAGGTCTAATAAAATTGACGTTATGAAAGATAAAGAA
TATGAAAATACTGGATGTTCAATTTTATTTTCACAAATAGTACATCTGAC
CCGTCATGAACACATCTCAAAAGGTCTTGTAATTTTGTAAGTATTGTTGA
TTATGAAACATTAATAAATAGAATACCTCAAAATCAAAATCCGAACAACA
AAAATAAAATATCAACAAAACTAATAGTCTGTATTAATAAAAATTTCTAA
CATCATTTATTTATTATTTGTATACTATTACAGTACCATAATGGCTTGTC
TTGGCACAACAAATATGAGCTTTCCATTTAAAACCTTCCAATGTTAGGTT
GTGAGTACCTTCTACTATTCCNCTTGGCACAACAAACAATGATCTCTCCA
TTTAAAACCTTCCAATGTTAGGTTATTGTAAGTACCTTCTACTATTCCAA
AGAACTGAACCACTCGGAACGCCGAGCTCTCCTTTGCATCTAATAACAAA
TGAAGAGGGATTTCAAATTGTATTTCTTGACCACAATGTTAATTATACAA
GCGGTCACGTTTTGACATCAGCCCTGTTGACTCGCGTTAGACCTTCATTG
AATCCAGAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037095XLOC_037095Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058897-exon-scaffold_314-1575043694:496316..496629TCONS_00058897-exon-scaffold_314-1575043694:496316..496629Clytia hemisphaericaexon
TCONS_00058897-exon-scaffold_314-1575043694:496019..496242TCONS_00058897-exon-scaffold_314-1575043694:496019..496242Clytia hemisphaericaexon
TCONS_00058897-exon-scaffold_314-1510915933:496316..496629TCONS_00058897-exon-scaffold_314-1510915933:496316..496629Clytia hemisphaericaexon
TCONS_00058897-exon-scaffold_314-1510915933:496019..496242TCONS_00058897-exon-scaffold_314-1510915933:496019..496242Clytia hemisphaericaexon
TCONS_00058897-exon-scaffold_314-1491911889:496316..496629TCONS_00058897-exon-scaffold_314-1491911889:496316..496629Clytia hemisphaericaexon
TCONS_00058897-exon-scaffold_314-1491911889:496019..496242TCONS_00058897-exon-scaffold_314-1491911889:496019..496242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:496019..496629 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.0534	9.78368	9.67489	8.48733	9.3863	7.76708	9.76469	10.7844	5.57539	5.81891	14.6566	6.72625	8.58389	7.38025	7.82271	7.27666	12.0995	10.1041	7.36286	11.0686	8.06526	7.39561	11.175	12.0274	5.26234	6.31307	10.75	7.28154	9.70364	10.6461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top