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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058900 ID=TCONS_00058900|Name=TCONS_00058900|organism=Clytia hemisphaerica|type=transcript|length=4669bpRun BLAST on NCBI protein sequence of TCONS_00058900-protein >TCONS_00058900-protein ID=TCONS_00058900-protein|Name=TCONS_00058900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=738bp MGRRQSMINKIIFTLATCSVSCSFMLLFWSSTFDKTHTYKKEKHLIADNGRun BLAST on NCBI transcript from alignment at scaffold_314:594905..614435- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058900 ID=TCONS_00058900|Name=TCONS_00058900|organism=Clytia hemisphaerica|type=transcript|length=19531bp|location=Sequence derived from alignment at scaffold_314:594905..614435- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_314:594905..614435- >TCONS_00058900 ID=TCONS_00058900|Name=TCONS_00058900|organism=Clytia hemisphaerica|type=CDS|length=39906bp|location=Sequence derived from alignment at scaffold_314:594905..614435- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058900 vs. Swiss-Prot (Human)
Match: LARG1 (LARGE xylosyl- and glucuronyltransferase 1 OS=Homo sapiens GN=LARGE1 PE=1 SV=1) HSP 1 Score: 755.362 bits (1949), Expect = 0.000e+0 Identity = 354/648 (54.63%), Postives = 474/648 (73.15%), Query Frame = 3
Query: 1035 HELEYARKNYEEIKKKQRQANEHFDCTKSKVPKCQVIHVAIVCAGFKETRRVVTLIKSILFYRKQPLHFHFVSDEPGRHVLEVLFNTWKLQKVGISFYDADKLKTEVEWIPNSHYSGVFGLMKLTLTKALPDILEKVIVLDTDVFFLTNIAELWKLFECFNSQQAIGLVENQSEWYTGKLWKNYNHWPALGRGFNTGVMLFDLKKLRQIKWANLWRLTAEKQLVNLLSTVLADQDVINAALKDNPDIVYRLPCEWNIQLSDNAQSATCYTDIVDLKIIHWNSPKKLEVKHKHVDFFRNMYLTFLQYDGYLLRMMISSCNVGPFEHQASAVTIETK--QLNEGDQCNDFTIEQNLSRRVHLFYLDYSNVKYVDN-DVTLLAHLSMDRLQILESLAKLWQGPMSIALYASDAEAQKFLRYSERSEILKDRRNIGLHIVYKDGDLYPVNYLRNIALEQVQSSHVFLCDIDFLPIDTLYQNLKTLSSSMDL--NKKALVVPAFETFQYKFNFPKSKAELLALWQNKDVETFRASVWLKGHAPTDFEKWKTADQNYEITWEADFEPYILVEKKNLPHYDIRFVGFGWNKVSHIMELHALKYQFIVSYNSFIIHMPHAPSFDITKYRNNRIYRQCLRRRKEAFKREMFIKYNVS 2963
+ +E + E ++ N + V KC+ IHVAIVCAG+ +R VVTL+KS+LF+R+ PLHFH ++D +L LF TW + V + FY+AD+LK+EV WIPN HYSG++GLMKL LTK LP LE+VIVLDTD+ F T+IAELW +F F QQ +GLVENQS+WY G LWKN+ WPALGRG+NTGV+L L KLR++KW +WRLTAE++L+ +LST LADQD+ NA +K NP +VY+LPC WN+QLSD+ +S CY D+ DLK+IHWNSPKKL VK+KHV+FFRN+YLTFL+YDG LLR + C P E ++ ++ + +L+E D C +F E+ R HL++L Y D+ DVTL+A LSMDRLQ+LE++ K W+GP+S+ALY SDAEAQ+FLRY++ SE+L R N+G HIVYK+G YPVN LRN+A++ + + ++FL DIDFLP+ LY+ L+ +DL KKA++VPAFET +Y+ +FPKSKAELL++ + TFR VW KGHAPT+F KW+TA Y + WEADFEPY++V +++ P YD RFVGFGWNKV+HIMEL +Y+FIV N+++IHMPHAPSFDITK+R+N+ YR CL+ KE F+++M +Y +
Sbjct: 102 YSMEEGTGDSENLRAGIVAGNSSECGQQPVVEKCETIHVAIVCAGYNASRDVVTLVKSVLFHRRNPLHFHLIADSIAEQILATLFQTWMVPAVRVDFYNADELKSEVSWIPNKHYSGIYGLMKLVLTKTLPANLERVIVLDTDITFATDIAELWAVFHKFKGQQVLGLVENQSDWYLGNLWKNHRPWPALGRGYNTGVILLLLDKLRKMKWEQMWRLTAERELMGMLSTSLADQDIFNAVIKQNPFLVYQLPCFWNVQLSDHTRSEQCYRDVSDLKVIHWNSPKKLRVKNKHVEFFRNLYLTFLEYDGNLLRRELFGC---PSEADVNSENLQKQLSELDEDDLCYEFRRERFTVHRTHLYFLHYEYEPAADSTDVTLVAQLSMDRLQMLEAICKHWEGPISLALYLSDAEAQQFLRYAQGSEVLMSRHNVGYHIVYKEGQFYPVNLLRNVAMKHISTPYMFLSDIDFLPMYGLYEYLRKSVIQLDLANTKKAMIVPAFETLRYRLSFPKSKAELLSMLDMGTLFTFRYHVWTKGHAPTNFAKWRTATTPYRVEWEADFEPYVVV-RRDCPEYDRRFVGFGWNKVAHIMELDVQEYEFIVLPNAYMIHMPHAPSFDITKFRSNKQYRICLKTLKEEFQQDMSRRYGFA 745 The following BLAST results are available for this feature:
BLAST of TCONS_00058900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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