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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058939 ID=TCONS_00058939|Name=TCONS_00058939|organism=Clytia hemisphaerica|type=transcript|length=825bp
CGTTCATATATTTTGGTTTCAAGACAAAACGAATGAAATCAAACTATCGT
TATTTCATCGCTCATTTATCGTTCGCTGATCTCTTGTGTTGTCTTTTGGT
ACCAATTTTCACCATTATTGAAATCATCAACCACGGTGACTGGATACTGG
GTTCTTTCGCTTGTAAATTCATCTATCCGATCGGCCGATTAAGTGGAGTG
AACTCCGCATGGATTTTGTGTGGTATGACTTACGAAAGATATCGGACTTT
TACAAATCCTTTCAAAACGTTGAGAAAACGCACCATACAAATTTATTTGG
CTTTAACATGGATCCTGAGCATTGCTATGTCACTGTCTTTCTCCTTGACT
ACAATTGAAATTCACAACAATAAATGCCATATGCGAGGTTCTACGTTAAT
GtcatttttaaacgttttaCAAACACAAATTAAGATAACCGTCCCTTCTT
GTGTCATGATATTTTTATGTGTCCGATTAAAGTTATTCCTAGCCAGTCAA
AACAAACAACGTTGCAGAAACCTCAATTCAGAATTCAAGACCGACAAATC
AGAGAAAGTGGTCCTGTATTCTGCTGCTTcttatctggtctgtattttac
cATCTTTGATTGGTGGCATGTATGCCAATATTTTGAATCTGGTTCAATCA
AGTTATTCATACGCTATATATGGCGAAATGATGGCTTGGctcttgatttt
ctttttttctaattcagtcatcaatgtttttatttatgCTGGAAGATTCG
CAGACTTCCGCCGATATATCATGGAATGGTTTCTACCCTTCAAGAAAAGA
ATCTATAAAGCGAAACATTCATTGA Run BLAST on NCBI protein sequence of TCONS_00058939-protein >TCONS_00058939-protein ID=TCONS_00058939-protein|Name=TCONS_00058939-protein|organism=Clytia hemisphaerica|type=polypeptide|length=274bp
FIYFGFKTKRMKSNYRYFIAHLSFADLLCCLLVPIFTIIEIINHGDWILG
SFACKFIYPIGRLSGVNSAWILCGMTYERYRTFTNPFKTLRKRTIQIYLA
LTWILSIAMSLSFSLTTIEIHNNKCHMRGSTLMSFLNVLQTQIKITVPSC
VMIFLCVRLKLFLASQNKQRCRNLNSEFKTDKSEKVVLYSAASYLVCILP
SLIGGMYANILNLVQSSYSYAIYGEMMAWLLIFFFSNSVINVFIYAGRFA
DFRRYIMEWFLPFKKRIYKAKHSL Run BLAST on NCBI transcript from alignment at scaffold_314:616208..617032 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058939 ID=TCONS_00058939|Name=TCONS_00058939|organism=Clytia hemisphaerica|type=transcript|length=825bp|location=Sequence derived from alignment at scaffold_314:616208..617032 (Clytia hemisphaerica)
TCAATGAATGTTTCGCTTTATAGATTCTTTTCTTGAAGGGTAGAAACCAT
TCCATGATATATCGGCGGAAGTCTGCGAATCTTCCAGcataaataaaaac
attgatgactgaattagaaaaaaagaaaatcaagagCCAAGCCATCATTT
CGCCATATATAGCGTATGAATAACTTGATTGAACCAGATTCAAAATATTG
GCATACATGCCACCAATCAAAGATggtaaaatacagaccagataagAAGC
AGCAGAATACAGGACCACTTTCTCTGATTTGTCGGTCTTGAATTCTGAAT
TGAGGTTTCTGCAACGTTGTTTGTTTTGACTGGCTAGGAATAACTTTAAT
CGGACACATAAAAATATCATGACACAAGAAGGGACGGTTATCTTAATTTG
TGTTTGtaaaacgtttaaaaatgaCATTAACGTAGAACCTCGCATATGGC
ATTTATTGTTGTGAATTTCAATTGTAGTCAAGGAGAAAGACAGTGACATA
GCAATGCTCAGGATCCATGTTAAAGCCAAATAAATTTGTATGGTGCGTTT
TCTCAACGTTTTGAAAGGATTTGTAAAAGTCCGATATCTTTCGTAAGTCA
TACCACACAAAATCCATGCGGAGTTCACTCCACTTAATCGGCCGATCGGA
TAGATGAATTTACAAGCGAAAGAACCCAGTATCCAGTCACCGTGGTTGAT
GATTTCAATAATGGTGAAAATTGGTACCAAAAGACAACACAAGAGATCAG
CGAACGATAAATGAGCGATGAAATAACGATAGTTTGATTTCATTCGTTTT
GTCTTGAAACCAAAATATATGAACG Coding sequence (CDS) from alignment at scaffold_314:616208..617032 >TCONS_00058939 ID=TCONS_00058939|Name=TCONS_00058939|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at scaffold_314:616208..617032 (Clytia hemisphaerica)
CAATGAATGTTTCGCTTTATAGATTCTTTTCTTGAAGGGTAGAAACCATT
CCATGATATATCGGCGGAAGTCTGCGAATCTTCCAGcataaataaaaaca
ttgatgactgaattagaaaaaaagaaaatcaagagCCAAGCCATCATTTC
GCCATATATAGCGTATGAATAACTTGATTGAACCAGATTCAAAATATTGG
CATACATGCCACCAATCAAAGATggtaaaatacagaccagataagAAGCA
GCAGAATACAGGACCACTTTCTCTGATTTGTCGGTCTTGAATTCTGAATT
GAGGTTTCTGCAACGTTGTTTGTTTTGACTGGCTAGGAATAACTTTAATC
GGACACATAAAAATATCATGACACAAGAAGGGACGGTTATCTTAATTTGT
GTTTGtaaaacgtttaaaaatgaCATTAACGTAGAACCTCGCATATGGCA
TTTATTGTTGTGAATTTCAATTGTAGTCAAGGAGAAAGACAGTGACATAG
CAATGCTCAGGATCCATGTTAAAGCCAAATAAATTTGTATGGTGCGTTTT
CTCAACGTTTTGAAAGGATTTGTAAAAGTCCGATATCTTTCGTAAGTCAT
ACCACACAAAATCCATGCGGAGTTCACTCCACTTAATCGGCCGATCGGAT
AGATGAATTTACAAGCGAAAGAACCCAGTATCCAGTCACCGTGGTTGATG
ATTTCAATAATGGTGAAAATTGGTACCAAAAGACAACACAAGAGATCAGC
GAACGATAAATGAGCGATGAAATAACGATAGTTTGATTTCATTCGTTTTG
TCTTGAAACCAAAATATATGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058939-exon-scaffold_314-1491911889:616208..617032 | TCONS_00058939-exon-scaffold_314-1491911889:616208..617032 | Clytia hemisphaerica | exon |
| TCONS_00058939-exon-scaffold_314-1510915933:616208..617032 | TCONS_00058939-exon-scaffold_314-1510915933:616208..617032 | Clytia hemisphaerica | exon |
| TCONS_00058939-exon-scaffold_314-1575043694:616208..617032 | TCONS_00058939-exon-scaffold_314-1575043694:616208..617032 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_314 | supercontig | scaffold_314:616208..617032 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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