TCONS_00058916 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058916
Unique NameTCONS_00058916
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2052

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058916 ID=TCONS_00058916|Name=TCONS_00058916|organism=Clytia hemisphaerica|type=transcript|length=2052bp
cacGTTTCCCGAAACAAGACTATTTTTTTTTGGCCtatgatatattcatt
ttcagatataggctGTGACTTTTTTCTTTCCATGGCAACGGGAGGTTACA
CCAGGCCCCACCTCTTGAATGATCttattcaaggaacaatattcctttgc
acaagctgctgaaCACGGGAAGCTTAGCCCAACGGTACTAAGCTGTTATA
GTAATTGATTTGGGTGCTTGAAAGTTGATAGGGATAGTAATTGGTTACAT
CTGGTAATTCTTGTTCTAGAAATGAGCACATTGTAAGGACGTCAGGTGGA
AAATTAAACTTACCAAAAGCACGGAAAACTGGTACAACCATTGTTGGGTT
GGTTTACAAGGATGGAGTTGTACTAGGTGCTGACACAAGAGCAACTGAGG
GAAATGTAGTTGCAGACAAGAACTGCGCCAAAATCCATTACATTGCACCG
AACATCTAttGTTGTGGTGCAGGGACAGCAGCTGATACAGAATACACAAC
AAACATTATCTCCGCTAACATTGAATTACATAGATTAGAAACACAGAAAA
AGCCACGTGTTGCAACTGCTTGTCGTATGTTAAAACAATATCTACACAGA
TATCAAGGTCACATTGGTGCAGCTTTAGTACTCGGTGGAGTTGATGTCAG
TGGACCATGCTTATACACTATTGCTCCTCATGGAAGTACTGATAAATTAC
CCTACGTTACTATGgGATCTGGATCATTAGCTGCCATGGCCGTCTTTGAG
GCTGGTTTTAGACCTAATATGGAGtTGGATGAAGCAAGGGAACTGGTCCG
ACAAGCCATCCGTGGTGGTATCTTCAACGATCTAgGTTCTGGAAGTAACG
TTGATGTTTGCGTCATCACAAAAGACAAAGTCGATTATATCCGCCCATAC
GACGAAGCGAACAAAAAGGGCGTCCGCCAACGATCTTATTTATTTCCACA
CGGAACAACTGAAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAG
AAACCACGGTTACAAAAACTNGATCTTATTTATATCCACACGGAACAACT
GAAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAGAAACCACGGT
TACAAAAATTGGTGATGTAGAGGCTATGGAAACATAAAGGACCCCGGTTT
CTATTTGGTTAATGTGCCCATTTCTAGGCTTGCGCCATTTGCGAACTTAT
CTCTGATGACTAAGTTAGGGAATATTTAGGAGGATAACACCTccgaaatt
aattttttatttaacattATGGTTTACTCGTGAAAGACTTTTCCAAACAG
TAAAATGTTCTAATAATGAAAACCATTTATTTTCTACTGTTTTGTttctt
catcaaaatatttacatttctAACAGAAAATTTCTAGCACAAATATTTAC
AAGAGTAATTACAACTAACTATTGAACATTCAAAAATACAGAGTCATTAA
AAAATCGAGCTGCATGTTACAGAGACCTACGTAAACGAAAATTAAGTCTT
CAAAGGTCTTGGTAACTTTAGGTTTTATAGAGTACCATGCAACCTAATTG
TccaaaaataatattcaaattttaggtTTCGAGAAACAAATCAAAGTCAG
TGCGAAAATTTAATTGCAAGGTTCCATCTACACCatattttttagatatt
ttgaacTATTTTATAAAGAACAGTAGCCTTTACTCTAATGGCTTTCTTTT
GGACCTTTGGACGTACAAAATGATCCATCATTTTGAGCCATTACAAAGAA
AGTATGTCCATATTTTCAAACAGTACTCTCATCCAAGTCATCTTCTTGTT
CTTCAGGGATAAAATTTTTATTCTGTTCCAATTGTCTTCTCTTACTCGTT
TCATCTCTCAATTTCCCTTGTAACCTATCCACCAATTTCTCCAGCATCAA
TCGTCTCTTGTACAACTCATCGCAAGAATTTTCTCGCTCCATAAGCTCTT
CTTGTTGCAAGTCCAGACGTCGTTGTAattcattgttttcaaaatataat
cgCTGTAATGTCTCTTTGGACTCGTTCACCTCAGATTCTCTGTCCGCCaa
ct
Run BLAST on NCBI

protein sequence of TCONS_00058916-protein

>TCONS_00058916-protein ID=TCONS_00058916-protein|Name=TCONS_00058916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=186bp
MLKQYLHRYQGHIGAALVLGGVDVSGPCLYTIAPHGSTDKLPYVTMGSGS
LAAMAVFEAGFRPNMELDEARELVRQAIRGGIFNDLGSGSNVDVCVITKD
KVDYIRPYDEANKKGVRQRSYLFPHGTTEVLSSSVRMFDVEETTVTKTXS
YLYPHGTTEVLSSSVRMFDVEETTVTKIGDVEAMET
Run BLAST on NCBI

transcript from alignment at scaffold_314:781242..785743-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058916 ID=TCONS_00058916|Name=TCONS_00058916|organism=Clytia hemisphaerica|type=transcript|length=4502bp|location=Sequence derived from alignment at scaffold_314:781242..785743- (Clytia hemisphaerica)
CACGTTTCCCGAAACAAGACTATTTTTTTTTGGCCTATGATATATTCATT
TTCAGATATAGGCTGTGACTTTTTTCTTTCCATGGCAACGGGAGGTTACA
CCAGGCCCCACCTCTTGAATGATCTTATTCAAGGAACAATATTCCTTTGC
ACAAGCTGCTGAACACGGGAAGCTTAGCCCAACGGTACTAAGCTGTTATA
GTAATTGATTTGGGTGCTTGAAAGTTGATAGGGATAGTAATTGGTTACAT
CTGGTAATTCTTGTTCTAGAAATGAGCACATTGTAAGGACGTCAGGTGGA
AAATTAAACTTACCAAAAGCACGGAAAACTGGTACAACCATTGTTGGGTT
GGTTTACAAGGATGGAGTTGTACTAGGTGCTGACACAAGAGCAACTGAGG
TATATATCTTCGAATAACTCAAAAATTGTGTCAAGTGCATTGCAGTTGAT
CAGACACTTTTTTAACCAACTAAATAAAACTTGGCTATTCTTTTTAGCGG
ACAAACATGAACAATCAAATGTTTAAGAAAAGGGTATTGAAATGATCAAA
ACTAAAACAATGGATCAAACTGGATCAAATTGAGTATTCTAAAATCAACA
GTTTTTTTTCTTTTTGTGCAAAGTAATAAAGTACATGGTATTGCAGACGC
AATGATAATGTTGATCAGTGTTTTTTATTTGATTCTGTCTAATTATTTAT
ATTAATACTATTTTAGGGAAATGTAGTTGCAGACAAGAACTGCGCCAAAA
TCCATTACATTGCACCGAACATCTAGTAAGTAAAGAGACTTGGGAGGCTT
TTCCAATAGTATTTGAACGAAATTCCTCAACTTGAAGAAATGCTTGTACA
CAAGAAATTGACTTCTAAATGAAAACTAACGTCTACTTAATCATTCTTCA
TTTAAAACGTTTTTAGTTGTTGTGGTGCAGGGACAGCAGCTGATACAGAA
TACACAACAAACATTATCTCCGCTAACATTGAATTACATAGATTAGAAAC
ACAGAAAAAGGTAACATATTTCCATTGATTGATTTTCTTTTTCTTTTTCT
TTTATTTTTATAACAAAGAGGTTACTACCATATATTTAAAACTAATATCA
GTAGTATTTCTTAGAATATTGAGGTTATTATATGGAACAGCGTAACTGGG
GTTTATTGTGGAACAATATTTCTCAGACTTTTCACTATATTTTTCTAGGT
CATTTACATGTAGACTTAATTTTTTTACATCAAATACCTTTTACGTTTCA
GCCACGTGTTGCAACTGCTTGTCGTATGTTAAAACAATATCTACACAGGT
AATAATAAACATTTCACTGAATTAAATGTAAATTCTCGCTAATATAACTT
AACTTTATAAATCAAGTCTTGAAATATTAAATATACCTCATCTAATTCTA
CTGAAAGCTAAATTACATTCAGATTTAACTCATCCAACCTTTTTTCGTGC
TTTTTGTATTCTTTTTTTAGATATCAAGGTCACATTGGTGCAGCTTTAGT
ACTCGGTGGAGTTGATGTCAGTGGACCATGCTTATACACTATTGCTCCTC
ATGGAAGTACTGATAAATTACCCTACGTTACTATGGGTGAGAATTTTTTT
ATATGTAGTGTGATGCTTTAAAAACTTCACAATTCTATTCTATCATTCAC
TGTCTCTGTTAGTGTTAGTTTAAATACTAGAACTTAATAACTAAACTTTT
CTGTCCCTGCAGGGGACAGCTGTCGAGTTAGAATGAGACACTAAATTTCA
ATATTCAAGATTCAATTTTTATCAAAAATGTAATAATCATTTTTATCAGC
GATCCAAAAAATATCTGCAATCTGATTGGTTAAAAAGAGTGCAATATATC
TTGTATTTTACATGTAAAAATATAAATTGACGAAAAGATGTTGTTGCATT
GTAGCGGTAGCAGCAATCTAACGTCACTATGCTACAAAAGTGCCCTGCGT
TTTTTCTTTCAACACAAAAAGTGTGCATTATTTGGGTCACCGATAAACCA
GTTATCAGAAATTTGCTCGTACAATATGGAAATATTTCACTCGTTCCGGA
TTTTCCGTTTATTTTCCTCGCCTAAAGGCTCGGAAAATATTGTACAGAAA
AATCGCGGAACTCGTAAAATATTTCTCATATTGGACTCGCAAATGTCCGA
TAACTATTACATATTATTTTCTTTGAAAATATCTTTCCAACAGCACGTAA
CTTTTTAATATGGCATAAAGTGTGCGCTGAGAGAATTTGAAAAAGTGAAG
AGTCTACATACTTTTGAGACGGAATTCGATACTTAAAATAATAATCGGTG
ATTTAAAACATACTCTTAGGTTCCAAATAAACGGGGAGGCTCGAATAAAC
GTAGGAGGGGTGCAAAATTTTTGAGATTTTAATAAACGGGGGGGGGGGGT
TTAAAGCCGGGGGTTGGAAATTGTACTTCCGAAAACCCAAAAATAAGGTG
AATATAAGGCTATTTAGAGCAAAATAAGGGGCCTTCTCTTTGACAGCTGA
AAATATTCTTAAAAGTTAATAAACAGGGGGGTCCTAATAAGGTCCGGCCA
TATAATATGATAATATACATTCCCCCCCGCTTTCTGTTCTAGGATCTGGA
TCATTAGCTGCCATGGCCGTCTTTGAGGCTGGTTTTAGACCTAATATGGA
GGTGAGAAGACTTTGGAGATAAAGTTTTGGTACTTTCGTACTCATAAACC
ATCTCTTACTGGCCGTATCAAACAAAATATGGATTGAGATTTCGAGAAAA
CTGAAGATGTTGTGGAAAAAGACTTGAAGATTCAGCCCATCCTTAAAGCT
CTTTTGGGAACAGACTTTTTCAAATTTTCCAATTAAAAATTTCTTAAATC
TTTTTTTTTTAATTATAGTTGGATGAAGCAAGGGAACTGGTCCGACAAGC
CATCCGTGGTGGTATCTTCAACGATCTAGTAAGTTTCATTATATTCAAAT
TTACTATTCAATTTGACTTGACTACTTTTGTAATTGCTACCTGCTTCAAG
ATACCATATCTCCGGAACAAAGACAAAGTTACCATTAAATACAGCACAAC
CTAAGTCTTGTTAAGGCCTCTCGCACCATTTCTCACAAACCAGACTCTTT
TTCAAAAAAAGGTACCTCTCAGGTAAAGAAATGTCAATTATCGGTGAAAT
CAGGTCTTTTTACTACGATCTCGAACTCTGATAGATTTGTGACATGGATG
TTTTCCCTGATACCTGGCCCTTCATTTAAATTTGTGGGGTAACTTCATGA
CACGTCATTCATAATCAAAAAAAACTTTTTACAGGGTTCTGGAAGTAACG
TTGATGTTTGCGTCATCACAAAAGACAAAGTCGATTATATCCGCCCATAC
GACGAAGCGAACAAAAAGGGCGTCCGCCAACGATCTTATTTATTTCCACA
CGGAACAACTGAAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAG
AAACCACGGTTACAAAAACTNGATCTTATTTATATCCACACGGAACAACT
GAAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAGAAACCACGGT
TACAAAAATTGGTGATGTAGAGGCTATGGAAACATAAAGGACCCCGGTTT
CTATTTGGTTAATGTGCCCATTTCTAGGCTTGCGCCATTTGCGAACTTAT
CTCTGATGACTAAGTTAGGGAATATTTAGGAGGATAACACCTCCGAAATT
AATTTTTTATTTAACATTATGGTTTACTCGTGAAAGACTTTTCCAAACAG
TAAAATGTTCTAATAATGAAAACCATTTATTTTCTACTGTTTTGTTTCTT
CATCAAAATATTTACATTTCTAACAGAAAATTTCTAGCACAAATATTTAC
AAGAGTAATTACAACTAACTATTGAACATTCAAAAATACAGAGTCATTAA
AAAATCGAGCTGCATGTTACAGAGACCTACGTAAACGAAAATTAAGTCTT
CAAAGGTCTTGGTAACTTTAGGTTTTATAGAGTACCATGCAACCTAATTG
TCCAAAAATAATATTCAAATTTTAGGTTTCGAGAAACAAATCAAAGTCAG
TGCGAAAATTTAATTGCAAGGTTCCATCTACACCATATTTTTTAGATATT
TTGAACTATTTTATAAAGAACAGTAGCCTTTACTCTAATGGCTTTCTTTT
GGACCTTTGGACGTACAAAATGATCCATCATTTTGAGCCATTACAAAGAA
AGTATGTCCATATTTTCAAACAGTACTCTCATCCAAGTCATCTTCTTGTT
CTTCAGGGATAAAATTTTTATTCTGTTCCAATTGTCTTCTCTTACTCGTT
TCATCTCTCAATTTCCCTTGTAACCTATCCACCAATTTCTCCAGCATCAA
TCGTCTCTTGTACAACTCATCGCAAGAATTTTCTCGCTCCATAAGCTCTT
CTTGTTGCAAGTCCAGACGTCGTTGTAATTCATTGTTTTCAAAATATAAT
CGCTGTAATGTCTCTTTGGACTCGTTCACCTCAGATTCTCTGTCCGCCAA
CT

Coding sequence (CDS) from alignment at scaffold_314:781242..785743-

>TCONS_00058916 ID=TCONS_00058916|Name=TCONS_00058916|organism=Clytia hemisphaerica|type=CDS|length=2805bp|location=Sequence derived from alignment at scaffold_314:781242..785743- (Clytia hemisphaerica)
GGTTCTGGAAGTAACGTTGATGTTTGCGTCATCACAAAAGACAAAGTCGA
TTATATCCGCCCATACGACGAAGCGAACAAAAAGGGCGTCCGCCAACGAT
CTTATTTATTTCCACACGGAACAACTGAAGTTTTATCTAGTTCTGTTCGC
ATGTTTGACGTCGAAGAAACCACGGTTACAAAAACTNGATCTTATTTATA
TCCACACGGAACAACTGAAGTTTTATCTAGTTCTGTTCGCATGTTTGACG
TCGAAGAAACCACGGTTACAAAAATTGGTGATGTAGAGGCTATGGAAACA
TAATTGGATGAAGCAAGGGAACTGGTCCGACAAGCCATCCGTGGTGGTAT
CTTCAACGATCTAGATCTGGATCATTAGCTGCCATGGCCGTCTTTGAGGC
TGGTTTTAGACCTAATATGGAGATATCAAGGTCACATTGGTGCAGCTTTA
GTACTCGGTGGAGTTGATGTCAGTGGACCATGCTTATACACTATTGCTCC
TCATGGAAGTACTGATAAATTACCCTACGTTACTATGGATGTTAAAACAA
TATCTACACAGGGTTCTGGAAGTAACGTTGATGTTTGCGTCATCACAAAA
GACAAAGTCGATTATATCCGCCCATACGACGAAGCGAACAAAAAGGGCGT
CCGCCAACGATCTTATTTATTTCCACACGGAACAACTGAAGTTTTATCTA
GTTCTGTTCGCATGTTTGACGTCGAAGAAACCACGGTTACAAAAACTNGA
TCTTATTTATATCCACACGGAACAACTGAAGTTTTATCTAGTTCTGTTCG
CATGTTTGACGTCGAAGAAACCACGGTTACAAAAATTGGTGATGTAGAGG
CTATGGAAACATAATTGGATGAAGCAAGGGAACTGGTCCGACAAGCCATC
CGTGGTGGTATCTTCAACGATCTAGATCTGGATCATTAGCTGCCATGGCC
GTCTTTGAGGCTGGTTTTAGACCTAATATGGAGATATCAAGGTCACATTG
GTGCAGCTTTAGTACTCGGTGGAGTTGATGTCAGTGGACCATGCTTATAC
ACTATTGCTCCTCATGGAAGTACTGATAAATTACCCTACGTTACTATGGA
TGTTAAAACAATATCTACACAGGGTTCTGGAAGTAACGTTGATGTTTGCG
TCATCACAAAAGACAAAGTCGATTATATCCGCCCATACGACGAAGCGAAC
AAAAAGGGCGTCCGCCAACGATCTTATTTATTTCCACACGGAACAACTGA
AGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAGAAACCACGGTTA
CAAAAACTNGATCTTATTTATATCCACACGGAACAACTGAAGTTTTATCT
AGTTCTGTTCGCATGTTTGACGTCGAAGAAACCACGGTTACAAAAATTGG
TGATGTAGAGGCTATGGAAACATAATTGGATGAAGCAAGGGAACTGGTCC
GACAAGCCATCCGTGGTGGTATCTTCAACGATCTAGATCTGGATCATTAG
CTGCCATGGCCGTCTTTGAGGCTGGTTTTAGACCTAATATGGAGATATCA
AGGTCACATTGGTGCAGCTTTAGTACTCGGTGGAGTTGATGTCAGTGGAC
CATGCTTATACACTATTGCTCCTCATGGAAGTACTGATAAATTACCCTAC
GTTACTATGGATGTTAAAACAATATCTACACAGGGTTCTGGAAGTAACGT
TGATGTTTGCGTCATCACAAAAGACAAAGTCGATTATATCCGCCCATACG
ACGAAGCGAACAAAAAGGGCGTCCGCCAACGATCTTATTTATTTCCACAC
GGAACAACTGAAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAGA
AACCACGGTTACAAAAACTNGATCTTATTTATATCCACACGGAACAACTG
AAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAGAAACCACGGTT
ACAAAAATTGGTGATGTAGAGGCTATGGAAACATAATTGGATGAAGCAAG
GGAACTGGTCCGACAAGCCATCCGTGGTGGTATCTTCAACGATCTAGATC
TGGATCATTAGCTGCCATGGCCGTCTTTGAGGCTGGTTTTAGACCTAATA
TGGAGATATCAAGGTCACATTGGTGCAGCTTTAGTACTCGGTGGAGTTGA
TGTCAGTGGACCATGCTTATACACTATTGCTCCTCATGGAAGTACTGATA
AATTACCCTACGTTACTATGGATGTTAAAACAATATCTACACAGGGTTCT
GGAAGTAACGTTGATGTTTGCGTCATCACAAAAGACAAAGTCGATTATAT
CCGCCCATACGACGAAGCGAACAAAAAGGGCGTCCGCCAACGATCTTATT
TATTTCCACACGGAACAACTGAAGTTTTATCTAGTTCTGTTCGCATGTTT
GACGTCGAAGAAACCACGGTTACAAAAACTNGATCTTATTTATATCCACA
CGGAACAACTGAAGTTTTATCTAGTTCTGTTCGCATGTTTGACGTCGAAG
AAACCACGGTTACAAAAATTGGTGATGTAGAGGCTATGGAAACATAATTG
GATGAAGCAAGGGAACTGGTCCGACAAGCCATCCGTGGTGGTATCTTCAA
CGATCTAGATCTGGATCATTAGCTGCCATGGCCGTCTTTGAGGCTGGTTT
TAGACCTAATATGGAGATATCAAGGTCACATTGGTGCAGCTTTAGTACTC
GGTGGAGTTGATGTCAGTGGACCATGCTTATACACTATTGCTCCTCATGG
AAGTACTGATAAATTACCCTACGTTACTATGGATGTTAAAACAATATCTA
CACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037102XLOC_037102Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058916-exon-scaffold_314-1575043694:785345..785743TCONS_00058916-exon-scaffold_314-1575043694:785345..785743Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:784969..785027TCONS_00058916-exon-scaffold_314-1575043694:784969..785027Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:784734..784827TCONS_00058916-exon-scaffold_314-1575043694:784734..784827Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:784446..784492TCONS_00058916-exon-scaffold_314-1575043694:784446..784492Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:784158..784273TCONS_00058916-exon-scaffold_314-1575043694:784158..784273Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:783093..783151TCONS_00058916-exon-scaffold_314-1575043694:783093..783151Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:782816..782875TCONS_00058916-exon-scaffold_314-1575043694:782816..782875Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1575043694:781242..782459TCONS_00058916-exon-scaffold_314-1575043694:781242..782459Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:785345..785743TCONS_00058916-exon-scaffold_314-1510915933:785345..785743Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:784969..785027TCONS_00058916-exon-scaffold_314-1510915933:784969..785027Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:784734..784827TCONS_00058916-exon-scaffold_314-1510915933:784734..784827Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:784446..784492TCONS_00058916-exon-scaffold_314-1510915933:784446..784492Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:784158..784273TCONS_00058916-exon-scaffold_314-1510915933:784158..784273Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:783093..783151TCONS_00058916-exon-scaffold_314-1510915933:783093..783151Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:782816..782875TCONS_00058916-exon-scaffold_314-1510915933:782816..782875Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1510915933:781242..782459TCONS_00058916-exon-scaffold_314-1510915933:781242..782459Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:785345..785743TCONS_00058916-exon-scaffold_314-1491911889:785345..785743Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:784969..785027TCONS_00058916-exon-scaffold_314-1491911889:784969..785027Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:784734..784827TCONS_00058916-exon-scaffold_314-1491911889:784734..784827Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:784446..784492TCONS_00058916-exon-scaffold_314-1491911889:784446..784492Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:784158..784273TCONS_00058916-exon-scaffold_314-1491911889:784158..784273Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:783093..783151TCONS_00058916-exon-scaffold_314-1491911889:783093..783151Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:782816..782875TCONS_00058916-exon-scaffold_314-1491911889:782816..782875Clytia hemisphaericaexon
TCONS_00058916-exon-scaffold_314-1491911889:781242..782459TCONS_00058916-exon-scaffold_314-1491911889:781242..782459Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058916-proteinTCONS_00058916-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_314supercontigscaffold_314:781242..785743 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
223.531	227.232	252.984	268.957	183.457	148.006	206.28	216.934	189.597	171.514	163.413	142.652	114.631	116.907	136.707	147.895	161.949	159.524	61.3139	78.826	105.541	104.179	123.26	112.79	195.004	185.175	122.791	108.567	91.3824	79.6294
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029055Ntn_hydrolases_N
IPR024689Proteasome_bsu_C
IPR001353Proteasome_sua/b
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004298threonine-type endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051603 proteolysis involved in cellular protein catabolic process
cellular_component GO:0005839 proteasome core complex
molecular_function GO:0004298 threonine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00058916 vs. Swiss-Prot (Human)
Match: PSB7 (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 343.199 bits (879), Expect = 3.972e-112
Identity = 168/252 (66.67%), Postives = 200/252 (79.37%), Query Frame = 1 
Query:  250 SGNSCSRNEHIVRTSGGK--LNLPKARKTGTTIVGLVYKDGVVLGADTRATEGNVVADKNCAKIHYIAPNIYCCGAGTAADTEYTTNIISANIELHRLETQKKPRVATACRMLKQYLHRYQGHIGAALVLGGVDVSGPCLYTIAPHGSTDKLPYVTMGSGSLAAMAVFEAGFRPNMELDEARELVRQAIRGGIFNDLGSGSNVDVCVITKDKVDYIRPYDEANKKGVRQRSYLFPHGTTEVLSSSVRMFDVE 999
            S ++C RN  ++     K    LPK RKTGTTI G+VYKDG+VLGADTRATEG VVADKNC+KIH+I+PNIYCCGAGTAADT+ TT +IS+N+ELH L T + PRV TA RMLKQ L RYQG+IGAALVLGGVDV+GP LY+I PHGSTDKLPYVTMGSGSLAAMAVFE  FRP+ME +EA+ LV +AI  GIFNDLGSGSN+D+CVI+K+K+D++RPY   NKKG R   Y    GTT VL+  +   ++E
Sbjct:   15 SFDNCRRNA-VLEADFAKRGYKLPKVRKTGTTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYQGYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPLEIE 265
The following BLAST results are available for this feature:
BLAST of TCONS_00058916 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PSB73.972e-11266.67Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
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