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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058984 ID=TCONS_00058984|Name=TCONS_00058984|organism=Clytia hemisphaerica|type=transcript|length=871bp
GTATGACAATGTTTGAACAAATTTTGGCTCCAAATTATACTAAATTAAAA
CAATCTATGAAAGTTTGTTGTGTTGTTGTTTGACGTGTGTCTGTCTGAGA
CGAAAAGTTAAATTTATAGTTATCTTTTACATCAACAGCTCGACGCAGAA
AATTTAATCATGATGTTTCAAAGAATTATTTTGATACTTATCGTTTTCAC
AAACAAGTACAAATTTGCTGATTCAGCGCTTATTATCCAAGATTTGACAG
ATGGTACAGCAATTACACATAATCTTGGTGATGACGATTCCGATCAAATC
AGCATAAGCTCTCCTATATATGTTCGAAATTCTAATGGTTCTACAACCCC
TATGACGTCTTTTCGGATTTCATCCAATGGTGCAGTTTTTCCTGGTGATT
TTTCACGTGCCGGCTCATTCAGTTTATCGACGTTCCCAAATGGATCATTC
TGCACATATTATGTGGATTTGGACATGGGTGATTGCATTGGCCCATGCTC
AACAAAATCTTTAAGAAATGTTGGCacaaaaacattgaatattttaaaga
atCATTTTGGTATTGAAGCAATTGCAGAGAGTGTTCTTGTGGTAACTTGG
ACGGATGTTGTTCGATGGAACAAAGGTAGTGGCGGCCAAGCAACATTTCA
AGCCATTCTTTGTTCCGATGCCAATGGTGGTTCTTATTACATTCCAAGTT
ACGAACAACTTGACTTCGACGCTAGGTTTGTGAGGGCATATCTATTAACC
CATGATATAAGCTTTCCAGCAGGAACATCAAATCTTCTCTGCCAATCGAA
TGTTGCTTATCCTGGAACCTTTGTCATTGGTTTGAACACTGAATCAAAAC
ATTACTATATGGCCCCAGGTA Run BLAST on NCBI transcript from alignment at scaffold_315:7564..9171- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058984 ID=TCONS_00058984|Name=TCONS_00058984|organism=Clytia hemisphaerica|type=transcript|length=1608bp|location=Sequence derived from alignment at scaffold_315:7564..9171- (Clytia hemisphaerica)
GTATGACAATGTTTGAACAAATTTTGGCTCCAAATTATACTAAATTAAAA
CAATCTATGAAAGTTTGTTGTGTTGTTGTTTGACGTGTGTCTGTCTGAGA
CGAAAAGTTAAATTTATAGTTATCTTTTACATCAACAGCTCGACGCAGAA
AATTTAATCATGATGTTTCAAAGAATTATTTTGATACTTATCGTTTTCAC
AAACAAGTACAAATTTGCTGATTCAGCGCTTATTATCCAAGATTTGACAG
ATGGTACAGCAATTACACATAATCTTGGTGATGACGATTCCGATCAAATC
AGCATAAGCTCTCCTATATATGTTCGAAATTCTAATGGTTCTACAACCCC
TATGACGTCTTTTCGGGTACACTTAAAACAATAGTTAACATTTCAGTCTT
TTGTTTGCCTAAATTTTCGCCTTCAAAGTATAGGCTATATTTGTAAATGG
CTCTCATATTTTCAGACAATATCTAAGTTTGCACGCCAATACTGTAAGTA
AAGCAACCTCCTCATTTCTCCTGTTTATTCCACTCTAGATTTCATCCAAT
GGTGCAGTTTTTCCTGGTGATTTTTCACGTGCCGGCTCATTCAGTTTATC
GACGTTCCCAAATGGATCATTCTGCACATATTATGTGGATTTGGACATGG
GTGATTGCATTGGCCCATGCTCAACAAAATCTTTAAGAAATGTTGGCACA
AAAACATTGAATATTTTAAAGAATCATTTTGGTATTGAAGCAATTGCAGA
GAGTGTTCTTGTGGTAACTTGGACGGATGTTGTTCGATGGAACAAAGGTA
GTGGCGGCCAAGTAAGCAATCAGATGTTACCTTCTCACACTTATAAAACT
ACTCAAGTTATTAATGCAAATTGTTTACCCTCATGTTAAGTGTACAACCG
TTTAACAAAGTTTGAGTCAAAGTAATTTTCAATTCAAGATTTTCGCGTTA
ATAAATTGTCGTATTAATTTTTCCAGCTAAAATACTTGTTAGTTATGTAA
GTAAAAAAGTATGTTTTTTTTCAATCGCAAGTACTTTACTTCAAAATGAA
AAATCAGTCGGGAAAAGATAGCTCGTTCGACAGACTTCAATATTTAATTA
TTATTGATCAGGCAACATTTCAAGCCATTCTTTGTTCCGATGCCAATGGT
GGTTCTTATTACATTCCAAGTTACGAACAACTTGACTTCGACGCTAGGGT
GAGTATTATCACTTGATAACCCGGTCGGGTAAATTGAATATTAAGTTCTA
GTTATCCTGTACCACTCCACCCACGGGAGTTTTTTATATTTCAAAAACAA
CTTGCTGTGTGTCGGTCTTTTTCGGTTAGCGAACTGTTAACAATTTTTGA
AGGAGACAAAAGCCTTCCAGGCCAGGGTATCTTATGTATTGAATGTACAG
TTGTTTCAAATTCCGATTTTTCTCAAAAAGAGTTAACTTTATACTTGTTT
ATTCTCTTTTTAGTTTGTGAGGGCATATCTATTAACCCATGATATAAGCT
TTCCAGCAGGAACATCAAATCTTCTCTGCCAATCGAATGTTGCTTATCCT
GGAACCTTTGTCATTGGTTTGAACACTGAATCAAAACATTACTATATGGC
CCCAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00058984-exon-scaffold_315-1575043694:8806..9171 | TCONS_00058984-exon-scaffold_315-1575043694:8806..9171 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1575043694:8361..8633 | TCONS_00058984-exon-scaffold_315-1575043694:8361..8633 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1575043694:7974..8060 | TCONS_00058984-exon-scaffold_315-1575043694:7974..8060 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1575043694:7564..7708 | TCONS_00058984-exon-scaffold_315-1575043694:7564..7708 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1510915933:8806..9171 | TCONS_00058984-exon-scaffold_315-1510915933:8806..9171 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1510915933:8361..8633 | TCONS_00058984-exon-scaffold_315-1510915933:8361..8633 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1510915933:7974..8060 | TCONS_00058984-exon-scaffold_315-1510915933:7974..8060 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1510915933:7564..7708 | TCONS_00058984-exon-scaffold_315-1510915933:7564..7708 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1491911889:8806..9171 | TCONS_00058984-exon-scaffold_315-1491911889:8806..9171 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1491911889:8361..8633 | TCONS_00058984-exon-scaffold_315-1491911889:8361..8633 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1491911889:7974..8060 | TCONS_00058984-exon-scaffold_315-1491911889:7974..8060 | Clytia hemisphaerica | exon |
| TCONS_00058984-exon-scaffold_315-1491911889:7564..7708 | TCONS_00058984-exon-scaffold_315-1491911889:7564..7708 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_315 | supercontig | scaffold_315:7564..9171 - |
Blast
The following BLAST results are available for this feature:
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