TCONS_00058994 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058994
Unique NameTCONS_00058994
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1628

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=transcript|length=1628bp
AGTAACTATTCAAGCCATGCTGTGTACAATGTTACTGAGCCCCCCCTGAG
CCCTTTGGGGCTTTGGACATGCTGCCAAATTTGATTTACCGGCTCTGGAG
AAACAAGCCTAGAAACACAGATAAGAAGAAACGAAACAGTGCTTTGTTGT
TGTTCGTTGTATTATATTCGGTAGTTGGACGTGAAATATTTTGCAATGTG
AAGATGAGCGATGGTGGAAATGTAAAGATTGTCATCGTTGATCAACATCA
CGAAGTGATTCCTCATTGGTACCAAGCAATCAACGATGGTAAAATCTCAT
CCAACAAAAATACACTGATTCATTTCGATGCACATTCAGACATGGCTACA
CCAGAGAATTTTGAGATGTTAGAGGAAACATTACAACATCCAAACGAAAA
GCTTCACAAAAATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACC
GTTTCATTACTTCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCA
AGCAAATGACCGTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACC
GTGTCATATGGGTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATA
CAAGTTGGATATGTAGGGTACACTATCAATAAACATGACCcgaaagaaac
aaaaacttcTTGTATGTGTAACAAGGATTATcgaaaatcagataaaaatt
tcAGTAAATGGCTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACA
GTTTTTGTGAGTCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTT
TATGTTCAGCGAAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGA
AAGCTGGTCATGTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAG
GGCGGCGTCCAAAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAAC
AAATATTGATAATCTAATGCCTGACTTGTTTTGtgtcaattccataatgg
cggaacaGCGATTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTAT
ATTTCTTCTGAGAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAA
ACATACTCAAAAGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAA
GGTTCACAAATTATCTTCAAAAACATacgaataaagaaatattaaaagCG
CTTGCTTCAACAAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGA
CAAAAGACTGGACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTT
ATCCTGAAAACACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATT
GAGACCCGTCGTGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAG
TACGCGACCACGTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACG
TGCCCCGTGAGCAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTT
GACCTAACTTTGAGGAAATTGAAAATGACTTCtcaaactatttttgatga
gaatctagtttttggtgaaaaaggCTGGGTGTAAAGTTTTAACGTTTTCG
ATTGTTTTACacctatttttatatttta
Run BLAST on NCBI

protein sequence of TCONS_00058994-protein

>TCONS_00058994-protein ID=TCONS_00058994-protein|Name=TCONS_00058994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MRLSYSHSCKQTTVSLLPLFXTSLLFPLMQANDRFITSAILTGLVDRVIW
VQPDWLSQDLAEIQVGYVGYTINKHDPKETKTSCMCNKDYRKSDKNFSKW
LCFYLAAAVENQTVFVSQENCLKVQPMRFFMFSETVFKRVFQVDSLKAGH
VIIDIDEDYFGVEGGVQKMIDGGIPKEVITNIDNLMPDLFCVNSIMAEQR
LNKAVQTMFYELYISSEKPTLKHLKERVMKHTQKYFCGRNDALTLKRFTN
YLQKHTNKEILKALASTKYCLFESLQLQIDKRLDAGHEFALCHGTIYPEN
TLNDLFTDSKTGIETRRDNLSKMLDFIYASTRPRLITIARSLRDGYVPRE
QQRFIERNVRKAVDLTLRKLKMTSQTIFDENLVFGEKGWV
Run BLAST on NCBI

transcript from alignment at scaffold_315:112185..115509-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=transcript|length=3325bp|location=Sequence derived from alignment at scaffold_315:112185..115509- (Clytia hemisphaerica)
AGTAACTATTCAAGCCATGCTGTGTACAATGTTACTGAGCCCCCCCTGAG CCCTTTGGGGCTTTGGACATGCTGCCAAATTTGATTTACCGGCTCTGGAG AAACAAGCCTAGAAACACAGATAAGAAGAAACGAAACAGGTACTTCTTTG AGAAACTTATTTTCAGGCTTCCTTATATATAAATTATATAATTTCGCAAT TGCAATTTACTTCCTCCTTAGAAATGTGAACTCTAAATGGTTTCGCTTAC AGATATTATATTTCTATTCCCGTGGAAGTGTGTCCAGTTTTAAAGTCGAC CACACTCTTTTTTTATAAAAATGATATCTTTCCAATTCATCATGAGTATT CTTAACTTTTTGGGAAACATCATTCTGAAATATTCTTATGGTATTCTTCG GTTTGTATCCAAACCCAGCCAATATCTAACTTGTAACACATACACGCTTT TTTTAATAAAATTAGTGTACTTTGGCTGAGGGTGAGCATTATTCTTATTT TTCTATTGTTCTAAACAATAGGCCTATTGTTTTAACTCTAAAATCTCACC CTGATATTCTTATAAAAAAGAAAGCGTGTACCTCAAGCATAGATCTCACA ATTTTGTGGAATTACAGGTGAATAATTGAAATTACATTATTAGATTCAGT TGCCAAATTCCATGATGCCGGTATTCTTATCATTATTCTTAATTTTTTGG TCAATTTTCAAAATAAAATTTCTTATAAAGTTTATTCTTATAAAAAAATA GTGTAGCCCTGCTGTTTTGTTCTCTAAGTTACTTTAGAGATCTTCGAAGT TTCGAAATTCAAAATAGTAATGGTGGACTATTCAGCTTTAAAACTGAATC TGCTTCTTTTTATATGAGAAGCCCAATCCAGCCGAGTAGTTAAAGATCAG TTGTTCACTAAGCGCAAACGCCCAGTTCGATACTCATTAAAGGCGGAAGA AAGGGCGTCTTCCGCAGTAATTAGGGTCCACACTCCGGGCATTACAAAGT GATTTCATTTCATCATTATTAATAAGAAGAGGTGGTGAAAGAGCTTCCTT CTACTATATCACTGTAGCAAATTTATCCTTATATTATAAAGTGTATCAAA AAATCCATTATAGTATTATTTGCTTGCTCAACATCAAGATGGGAATCAAC GTATCTTTGAAAATGAGACGATGGGCAGGGCATCGTCATCTATGTAGAAA CATTTTTCTCTTCTCTGCTTTTAGTGCTTTGTTGTTGTTCGTTGTATTAT ATTCGGTAGTTGGACGTGAAATATTTTGCAATGTGAAGATGAGCGATGGT GGAAATGTAAAGATTGTCATCGTTGATCAACATCACGAAGGTATTTTGTC AGTTTCGTCAATTTTCGAGATCGCTGACTTACGAAAATTAAATCTACGTG AAATTTTGGAAATGAGAATTTGTAATTGATTCAGGGCTATCTATAACAAC TTTTTGTCTGATTCGCGCAATTTATCAAAATGCTGAATCACGAAAATAAA TTCGCAGAAAATAATTTTGGCACGTAAAATTAAATTTCGCAAAAATTAAT TGGATGAAAAGTAGTGTTGTTCTCAGCGTTATCCTGATCAAATAATTCGA TCTCACAATTTTAATTTTCCTTTTCAGTGATTCCTCATTGGTACCAAGCA ATCAACGATGGTAAAATCTCATCCAACAAAAATACACTGGTAAATATTTT ATTATGTAGAATTTAAGATTTCTTGCTTTCTCGGGATACAGGGGTATTGA AACCAAAGATTTTTTAAAAGGAAACCCCATATAGGACATTAAAACTCACA ATAACAATTGCTATCTACCTTGAGTGACTGAAACGATTTGGAACAACTCG CAAAGTTCAGGACGGTAGAAACGCATATTAGTCCTCAGTTAGTCAGGATT CATAAACATCATAACTAACCGTCTCCGTCATAGGAAAGACGATATAAATA TAAACTTGTGTATAAAGGAAAGATAAAGAGTAATTGTGAAAAACATTTCG TTCTTTTCCTGTAGATTCATTTCGATGCACATTCAGACATGGCTACACCA GAGAATTTTGAGATGTTAGAGGAAACATTACAACATCCAAACGAAAAGCT TCACAAAAATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACCGTT TCATTACTTCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCAAGC AAATGACCGTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACCGTG TCATATGGGTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATACAA GTTGGATATGTAGGGTACACTATCAATAAACATGACCCGAAAGAAACAAA AACTTCTTGTATGTGTAACAAGGATTATCGAAAATCAGATAAAAATTTCA GTAAATGGCTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACAGTT TTTGTGAGTCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTTTAT GTTCAGCGAAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGAAAG CTGGTCATGTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAGGGC GGCGTCCAAAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAACAAA TATTGATAATCTAATGCCTGACTTGTTTTGTGTCAATTCCATAATGGCGG AACAGCGATTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTATATT TCTTCTGAGAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAAACA TACTCAAAAGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAAGGT TCACAAATTATCTTCAAAAACATACGAATAAAGAAATATTAAAAGCGCTT GCTTCAACAAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGACAA AAGACTGGACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTTATC CTGAAAACACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATTGAG ACCCGTCGTGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAGTAC GCGACCACGTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACGTGC CCCGTGAGCAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTTGAC CTAACTTTGAGGAAATTGAAAATGACTTCTCAAACTATTTTTGATGAGAA TCTAGTTTTTGGTGAAAAAGGCTGGGTGTAAAGTTTTAACGTTTTCGATT GTTTTACACCTATTTTTATATTTTA

Coding sequence (CDS) from alignment at scaffold_315:112185..115509-

>TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_315:112185..115509- (Clytia hemisphaerica)
ATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACCGTTTCATTACT
TCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCAAGCAAATGACC
GTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACCGTGTCATATGG
GTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATACAAGTTGGATA
TGTAGGGTACACTATCAATAAACATGACCCGAAAGAAACAAAAACTTCTT
GTATGTGTAACAAGGATTATCGAAAATCAGATAAAAATTTCAGTAAATGG
CTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACAGTTTTTGTGAG
TCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTTTATGTTCAGCG
AAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGAAAGCTGGTCAT
GTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAGGGCGGCGTCCA
AAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAACAAATATTGATA
ATCTAATGCCTGACTTGTTTTGTGTCAATTCCATAATGGCGGAACAGCGA
TTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTATATTTCTTCTGA
GAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAAACATACTCAAA
AGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAAGGTTCACAAAT
TATCTTCAAAAACATACGAATAAAGAAATATTAAAAGCGCTTGCTTCAAC
AAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGACAAAAGACTGG
ACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTTATCCTGAAAAC
ACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATTGAGACCCGTCG
TGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAGTACGCGACCAC
GTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACGTGCCCCGTGAG
CAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTTGACCTAACTTT
GAGGAAATTGAAAATGACTTCTCAAACTATTTTTGATGAGAATCTAGTTT
TTGGTGAAAAAGGCTGGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037154XLOC_037154Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058994-exon-scaffold_315-1575043694:115371..115509TCONS_00058994-exon-scaffold_315-1575043694:115371..115509Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1575043694:114170..114285TCONS_00058994-exon-scaffold_315-1575043694:114170..114285Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1575043694:113821..113882TCONS_00058994-exon-scaffold_315-1575043694:113821..113882Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1575043694:112185..113495TCONS_00058994-exon-scaffold_315-1575043694:112185..113495Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1510915933:115371..115509TCONS_00058994-exon-scaffold_315-1510915933:115371..115509Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1510915933:114170..114285TCONS_00058994-exon-scaffold_315-1510915933:114170..114285Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1510915933:113821..113882TCONS_00058994-exon-scaffold_315-1510915933:113821..113882Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1510915933:112185..113495TCONS_00058994-exon-scaffold_315-1510915933:112185..113495Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1491911889:115371..115509TCONS_00058994-exon-scaffold_315-1491911889:115371..115509Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1491911889:114170..114285TCONS_00058994-exon-scaffold_315-1491911889:114170..114285Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1491911889:113821..113882TCONS_00058994-exon-scaffold_315-1491911889:113821..113882Clytia hemisphaericaexon
TCONS_00058994-exon-scaffold_315-1491911889:112185..113495TCONS_00058994-exon-scaffold_315-1491911889:112185..113495Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058994-proteinTCONS_00058994-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:112185..115509 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (2.2463 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.13595 2.2463 0.75663 0.526213 0.202299 0.174456 1.62088 1.29986 1.06556 1.3532 0.830339 1.217 0.0351773 0.0182619 0.161694 0.124301 0.0999472 0.0596536 0 0.0289127 0 0.0353726 1.6306 1.32568 0.585653 0.465528 0.842617 0.402461 0.381673 0.559873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
2004006008001000120014001600Sequence
Match NameE-valueIdentityDescription
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