Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=transcript|length=1628bp AGTAACTATTCAAGCCATGCTGTGTACAATGTTACTGAGCCCCCCCTGAG CCCTTTGGGGCTTTGGACATGCTGCCAAATTTGATTTACCGGCTCTGGAG AAACAAGCCTAGAAACACAGATAAGAAGAAACGAAACAGTGCTTTGTTGT TGTTCGTTGTATTATATTCGGTAGTTGGACGTGAAATATTTTGCAATGTG AAGATGAGCGATGGTGGAAATGTAAAGATTGTCATCGTTGATCAACATCA CGAAGTGATTCCTCATTGGTACCAAGCAATCAACGATGGTAAAATCTCAT CCAACAAAAATACACTGATTCATTTCGATGCACATTCAGACATGGCTACA CCAGAGAATTTTGAGATGTTAGAGGAAACATTACAACATCCAAACGAAAA GCTTCACAAAAATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACC GTTTCATTACTTCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCA AGCAAATGACCGTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACC GTGTCATATGGGTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATA CAAGTTGGATATGTAGGGTACACTATCAATAAACATGACCcgaaagaaac aaaaacttcTTGTATGTGTAACAAGGATTATcgaaaatcagataaaaatt tcAGTAAATGGCTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACA GTTTTTGTGAGTCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTT TATGTTCAGCGAAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGA AAGCTGGTCATGTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAG GGCGGCGTCCAAAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAAC AAATATTGATAATCTAATGCCTGACTTGTTTTGtgtcaattccataatgg cggaacaGCGATTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTAT ATTTCTTCTGAGAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAA ACATACTCAAAAGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAA GGTTCACAAATTATCTTCAAAAACATacgaataaagaaatattaaaagCG CTTGCTTCAACAAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGA CAAAAGACTGGACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTT ATCCTGAAAACACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATT GAGACCCGTCGTGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAG TACGCGACCACGTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACG TGCCCCGTGAGCAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTT GACCTAACTTTGAGGAAATTGAAAATGACTTCtcaaactatttttgatga gaatctagtttttggtgaaaaaggCTGGGTGTAAAGTTTTAACGTTTTCG ATTGTTTTACacctatttttatatttta Run BLAST on NCBI protein sequence of TCONS_00058994-protein >TCONS_00058994-protein ID=TCONS_00058994-protein|Name=TCONS_00058994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=390bp
MRLSYSHSCKQTTVSLLPLFXTSLLFPLMQANDRFITSAILTGLVDRVIW VQPDWLSQDLAEIQVGYVGYTINKHDPKETKTSCMCNKDYRKSDKNFSKW LCFYLAAAVENQTVFVSQENCLKVQPMRFFMFSETVFKRVFQVDSLKAGH VIIDIDEDYFGVEGGVQKMIDGGIPKEVITNIDNLMPDLFCVNSIMAEQR LNKAVQTMFYELYISSEKPTLKHLKERVMKHTQKYFCGRNDALTLKRFTN YLQKHTNKEILKALASTKYCLFESLQLQIDKRLDAGHEFALCHGTIYPEN TLNDLFTDSKTGIETRRDNLSKMLDFIYASTRPRLITIARSLRDGYVPRE QQRFIERNVRKAVDLTLRKLKMTSQTIFDENLVFGEKGWV Run BLAST on NCBI transcript from alignment at scaffold_315:112185..115509- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=transcript|length=3325bp|location=Sequence derived from alignment at scaffold_315:112185..115509- (Clytia hemisphaerica) AGTAACTATTCAAGCCATGCTGTGTACAATGTTACTGAGCCCCCCCTGAG
CCCTTTGGGGCTTTGGACATGCTGCCAAATTTGATTTACCGGCTCTGGAG
AAACAAGCCTAGAAACACAGATAAGAAGAAACGAAACAGGTACTTCTTTG
AGAAACTTATTTTCAGGCTTCCTTATATATAAATTATATAATTTCGCAAT
TGCAATTTACTTCCTCCTTAGAAATGTGAACTCTAAATGGTTTCGCTTAC
AGATATTATATTTCTATTCCCGTGGAAGTGTGTCCAGTTTTAAAGTCGAC
CACACTCTTTTTTTATAAAAATGATATCTTTCCAATTCATCATGAGTATT
CTTAACTTTTTGGGAAACATCATTCTGAAATATTCTTATGGTATTCTTCG
GTTTGTATCCAAACCCAGCCAATATCTAACTTGTAACACATACACGCTTT
TTTTAATAAAATTAGTGTACTTTGGCTGAGGGTGAGCATTATTCTTATTT
TTCTATTGTTCTAAACAATAGGCCTATTGTTTTAACTCTAAAATCTCACC
CTGATATTCTTATAAAAAAGAAAGCGTGTACCTCAAGCATAGATCTCACA
ATTTTGTGGAATTACAGGTGAATAATTGAAATTACATTATTAGATTCAGT
TGCCAAATTCCATGATGCCGGTATTCTTATCATTATTCTTAATTTTTTGG
TCAATTTTCAAAATAAAATTTCTTATAAAGTTTATTCTTATAAAAAAATA
GTGTAGCCCTGCTGTTTTGTTCTCTAAGTTACTTTAGAGATCTTCGAAGT
TTCGAAATTCAAAATAGTAATGGTGGACTATTCAGCTTTAAAACTGAATC
TGCTTCTTTTTATATGAGAAGCCCAATCCAGCCGAGTAGTTAAAGATCAG
TTGTTCACTAAGCGCAAACGCCCAGTTCGATACTCATTAAAGGCGGAAGA
AAGGGCGTCTTCCGCAGTAATTAGGGTCCACACTCCGGGCATTACAAAGT
GATTTCATTTCATCATTATTAATAAGAAGAGGTGGTGAAAGAGCTTCCTT
CTACTATATCACTGTAGCAAATTTATCCTTATATTATAAAGTGTATCAAA
AAATCCATTATAGTATTATTTGCTTGCTCAACATCAAGATGGGAATCAAC
GTATCTTTGAAAATGAGACGATGGGCAGGGCATCGTCATCTATGTAGAAA
CATTTTTCTCTTCTCTGCTTTTAGTGCTTTGTTGTTGTTCGTTGTATTAT
ATTCGGTAGTTGGACGTGAAATATTTTGCAATGTGAAGATGAGCGATGGT
GGAAATGTAAAGATTGTCATCGTTGATCAACATCACGAAGGTATTTTGTC
AGTTTCGTCAATTTTCGAGATCGCTGACTTACGAAAATTAAATCTACGTG
AAATTTTGGAAATGAGAATTTGTAATTGATTCAGGGCTATCTATAACAAC
TTTTTGTCTGATTCGCGCAATTTATCAAAATGCTGAATCACGAAAATAAA
TTCGCAGAAAATAATTTTGGCACGTAAAATTAAATTTCGCAAAAATTAAT
TGGATGAAAAGTAGTGTTGTTCTCAGCGTTATCCTGATCAAATAATTCGA
TCTCACAATTTTAATTTTCCTTTTCAGTGATTCCTCATTGGTACCAAGCA
ATCAACGATGGTAAAATCTCATCCAACAAAAATACACTGGTAAATATTTT
ATTATGTAGAATTTAAGATTTCTTGCTTTCTCGGGATACAGGGGTATTGA
AACCAAAGATTTTTTAAAAGGAAACCCCATATAGGACATTAAAACTCACA
ATAACAATTGCTATCTACCTTGAGTGACTGAAACGATTTGGAACAACTCG
CAAAGTTCAGGACGGTAGAAACGCATATTAGTCCTCAGTTAGTCAGGATT
CATAAACATCATAACTAACCGTCTCCGTCATAGGAAAGACGATATAAATA
TAAACTTGTGTATAAAGGAAAGATAAAGAGTAATTGTGAAAAACATTTCG
TTCTTTTCCTGTAGATTCATTTCGATGCACATTCAGACATGGCTACACCA
GAGAATTTTGAGATGTTAGAGGAAACATTACAACATCCAAACGAAAAGCT
TCACAAAAATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACCGTT
TCATTACTTCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCAAGC
AAATGACCGTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACCGTG
TCATATGGGTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATACAA
GTTGGATATGTAGGGTACACTATCAATAAACATGACCCGAAAGAAACAAA
AACTTCTTGTATGTGTAACAAGGATTATCGAAAATCAGATAAAAATTTCA
GTAAATGGCTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACAGTT
TTTGTGAGTCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTTTAT
GTTCAGCGAAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGAAAG
CTGGTCATGTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAGGGC
GGCGTCCAAAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAACAAA
TATTGATAATCTAATGCCTGACTTGTTTTGTGTCAATTCCATAATGGCGG
AACAGCGATTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTATATT
TCTTCTGAGAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAAACA
TACTCAAAAGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAAGGT
TCACAAATTATCTTCAAAAACATACGAATAAAGAAATATTAAAAGCGCTT
GCTTCAACAAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGACAA
AAGACTGGACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTTATC
CTGAAAACACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATTGAG
ACCCGTCGTGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAGTAC
GCGACCACGTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACGTGC
CCCGTGAGCAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTTGAC
CTAACTTTGAGGAAATTGAAAATGACTTCTCAAACTATTTTTGATGAGAA
TCTAGTTTTTGGTGAAAAAGGCTGGGTGTAAAGTTTTAACGTTTTCGATT
GTTTTACACCTATTTTTATATTTTA Coding sequence (CDS) from alignment at scaffold_315:112185..115509- >TCONS_00058994 ID=TCONS_00058994|Name=TCONS_00058994|organism=Clytia hemisphaerica|type=CDS|length=1173bp|location=Sequence derived from alignment at scaffold_315:112185..115509- (Clytia hemisphaerica) ATGCGTCTCTCTTATTCCCACTCATGCAAGCAAACGACCGTTTCATTACT TCCGCTGTTTTNCACGTCCCTCTTATTCCCACTCATGCAAGCAAATGACC GTTTCATTACTTCCGCTATTTTAACCGGTCTTGTTGACCGTGTCATATGG GTGCAACCGGATTGGCTCAGTCAGGATTTGGCGGAGATACAAGTTGGATA TGTAGGGTACACTATCAATAAACATGACCCGAAAGAAACAAAAACTTCTT GTATGTGTAACAAGGATTATCGAAAATCAGATAAAAATTTCAGTAAATGG CTTTGTTTTTACTTAGCAGCAGCTGTTGAAAATCAAACAGTTTTTGTGAG TCAAGAGAATTGTCTTAAGGTCCAACCAATGAGATTTTTTATGTTCAGCG AAACTGTTTTCAAACGCGTGTTTCAGGTCGATTCCCTGAAAGCTGGTCAT GTGATCATCGATATTGATGAAGATTATTTCGGGGTGGAGGGCGGCGTCCA AAAAATGATTGATGGCGGGATTCCAAAGGAAGTAATAACAAATATTGATA ATCTAATGCCTGACTTGTTTTGTGTCAATTCCATAATGGCGGAACAGCGA TTGAACAAAGCGGTTCAAACCATGTTTTACGAACTGTATATTTCTTCTGA GAAACCCACTTTGAAACATTTAAAAGAAAGGGTGATGAAACATACTCAAA AGTATTTCTGCGGACGAAACGATGCACTTACTCTCAAAAGGTTCACAAAT TATCTTCAAAAACATACGAATAAAGAAATATTAAAAGCGCTTGCTTCAAC AAAATATTGCTTATTCGAAAGCTTGCAACTACAGATAGACAAAAGACTGG ACGCTGGCCATGAATTTGCATTATGCCATGGAACAATTTATCCTGAAAAC ACTTTAAATGATTTATTCACTGACTCCAAAACTGGAATTGAGACCCGTCG TGATAATTTGTCTAAAATGTTGGACTTTATTTACGCGAGTACGCGACCAC GTTTAATCACGATTGCACGTTCTTTACGTGACGGTTACGTGCCCCGTGAG CAACAAAGATTCATTGAACGTAACGTACGTAAAGCAGTTGACCTAACTTT GAGGAAATTGAAAATGACTTCTCAAACTATTTTTGATGAGAATCTAGTTT TTGGTGAAAAAGGCTGGGTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00058994-exon-scaffold_315-1575043694:115371..115509 | TCONS_00058994-exon-scaffold_315-1575043694:115371..115509 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1575043694:114170..114285 | TCONS_00058994-exon-scaffold_315-1575043694:114170..114285 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1575043694:113821..113882 | TCONS_00058994-exon-scaffold_315-1575043694:113821..113882 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1575043694:112185..113495 | TCONS_00058994-exon-scaffold_315-1575043694:112185..113495 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1510915933:115371..115509 | TCONS_00058994-exon-scaffold_315-1510915933:115371..115509 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1510915933:114170..114285 | TCONS_00058994-exon-scaffold_315-1510915933:114170..114285 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1510915933:113821..113882 | TCONS_00058994-exon-scaffold_315-1510915933:113821..113882 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1510915933:112185..113495 | TCONS_00058994-exon-scaffold_315-1510915933:112185..113495 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1491911889:115371..115509 | TCONS_00058994-exon-scaffold_315-1491911889:115371..115509 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1491911889:114170..114285 | TCONS_00058994-exon-scaffold_315-1491911889:114170..114285 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1491911889:113821..113882 | TCONS_00058994-exon-scaffold_315-1491911889:113821..113882 | Clytia hemisphaerica | exon |
TCONS_00058994-exon-scaffold_315-1491911889:112185..113495 | TCONS_00058994-exon-scaffold_315-1491911889:112185..113495 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_315 | supercontig | scaffold_315:112185..115509 - |
Blast
The following BLAST results are available for this feature:
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