TCONS_00059019 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059019
Unique NameTCONS_00059019
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059019 ID=TCONS_00059019|Name=TCONS_00059019|organism=Clytia hemisphaerica|type=transcript|length=819bp
AGGCTCCTGTCTTCtctttaaaattatataaagttaaGGAAAGAAAATAC
TTATAAAATGTATTTACCAGGCTTTGACACGTTTTGACGAAACATGGAAA
CCTCGGAACAATGCTTTCTTGGACAACCTATCACATAAACACTACTGAAA
TTCTATGAAATAAACACgaattaattgataaaaaatgaaattgaaataac
cTATCTACATTGGAGCACTAAAAGATAACACTACAACAATCCAAACAAGA
AACAATGTCGCCGTTAAAATATATGTTTATCAATTACACGTTCACAGTAT
CTCTCTAGTCAGGGAAAACAATCACATATTCAAAAGTGTCTTTAGTtagg
aaaacaaccaaaacaatcacacaagtttcaaaagctTAGAAAATCCACAA
AACCTCTGATCTCATAAATGTAAGAACCAAGcattaaagactttattttg
gGGTCACTCGGTAAGCAATCCCATATAACTTGTTCCAGAGGTATCGTCCA
TATAAGAGTTTGTATTCCAAAGCAAATATTTCTCTCGTACTACCCATTTT
tatcatcaattcttcaacttgaACTAGTTTCGCATCTCAATAGAATGTTA
ATACCATTTTGCCAATCATTTAATGTTCAAAGTTGTGGGGATGTAgcgtt
ttctttttcaacagGTAGAGGGCAAAGTGATTGTTTGTTCTTCTCTCGTA
CCCATGTTGGGTTTTTAGCTTCGACCACGCACGAGTCATCTGAGTcatcc
aaatatttttatctttcattttagatttgCTTTTTCTCAATATTGCTAAC
TGTAAATAATAAGTGGTAG
Run BLAST on NCBI

transcript from alignment at scaffold_315:142594..143412

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059019 ID=TCONS_00059019|Name=TCONS_00059019|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at scaffold_315:142594..143412 (Clytia hemisphaerica)
CTACCACTTATTATTTACAGTTAGCAATATTGAGAAAAAGcaaatctaaa
atgaaagataaaaatatttggatgACTCAGATGACTCGTGCGTGGTCGAA
GCTAAAAACCCAACATGGGTACGAGAGAAGAACAAACAATCACTTTGCCC
TCTACctgttgaaaaagaaaacgcTACATCCCCACAACTTTGAACATTAA
ATGATTGGCAAAATGGTATTAACATTCTATTGAGATGCGAAACTAGTtca
agttgaagaattgatgataAAAATGGGTAGTACGAGAGAAATATTTGCTT
TGGAATACAAACTCTTATATGGACGATACCTCTGGAACAAGTTATATGGG
ATTGCTTACCGAGTGACCccaaaataaagtctttaatgCTTGGTTCTTAC
ATTTATGAGATCAGAGGTTTTGTGGATTTTCTAagcttttgaaacttgtg
tgattgttttggttgttttcctaACTAAAGACACTTTTGAATATGTGATT
GTTTTCCCTGACTAGAGAGATACTGTGAACGTGTAATTGATAAACATATA
TTTTAACGGCGACATTGTTTCTTGTTTGGATTGTTGTAGTGTTATCTTTT
AGTGCTCCAATGTAGATAggttatttcaatttcattttttatcaattaat
tcGTGTTTATTTCATAGAATTTCAGTAGTGTTTATGTGATAGGTTGTCCA
AGAAAGCATTGTTCCGAGGTTTCCATGTTTCGTCAAAACGTGTCAAAGCC
TGGTAAATACATTTTATAAGTATTTTCTTTCCttaactttatataatttt
aaagaGAAGACAGGAGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037170XLOC_037170Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059019-exon-scaffold_315-1491911889:142594..143412TCONS_00059019-exon-scaffold_315-1491911889:142594..143412Clytia hemisphaericaexon
TCONS_00059019-exon-scaffold_315-1510915933:142594..143412TCONS_00059019-exon-scaffold_315-1510915933:142594..143412Clytia hemisphaericaexon
TCONS_00059019-exon-scaffold_315-1575043694:142594..143412TCONS_00059019-exon-scaffold_315-1575043694:142594..143412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:142594..143412 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0672215	0	0.151125	0.156853	2.19376	0.712776	0.614566	0.430382	0.487481	0	0.25796	0.106746	0.135712	0	0.102663	0.210921	0.0772413	0.300738	0.0890284	0.0956097	1.76136	1.86436	5.91661	4.29745	0	0	0.926779	1.07714	0.643124	0.670509
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059019 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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