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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00058955 ID=TCONS_00058955|Name=TCONS_00058955|organism=Clytia hemisphaerica|type=transcript|length=2801bpRun BLAST on NCBI protein sequence of TCONS_00058955-protein >TCONS_00058955-protein ID=TCONS_00058955-protein|Name=TCONS_00058955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=785bp DMPMMPMNTPMMPPTIPPVQQPMIPADMGGGGPSSDIKTEKDTTKPKKMKRun BLAST on NCBI transcript from alignment at scaffold_315:157928..172993+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00058955 ID=TCONS_00058955|Name=TCONS_00058955|organism=Clytia hemisphaerica|type=transcript|length=15066bp|location=Sequence derived from alignment at scaffold_315:157928..172993+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_315:157928..172993+ >TCONS_00058955 ID=TCONS_00058955|Name=TCONS_00058955|organism=Clytia hemisphaerica|type=CDS|length=47160bp|location=Sequence derived from alignment at scaffold_315:157928..172993+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00058955 vs. Swiss-Prot (Human)
Match: PR40A (Pre-mRNA-processing factor 40 homolog A OS=Homo sapiens GN=PRPF40A PE=1 SV=2) HSP 1 Score: 356.295 bits (913), Expect = 9.128e-107 Identity = 223/410 (54.39%), Postives = 302/410 (73.66%), Query Frame = 3
Query: 573 WNTKEEAKQAFKDLLREKNVPSTATWEQATKLIVHDYRFEALPKVNEKKQVFNTYXXXXXXXXXXXXXXXXXXXXXXLQVYLEEHPRMHSHVRYRKACEMFENDKQWNSVAERDRKDLFDDVLFFLAXXXXXXXXXLHMYNKQYMMETFAKMPGLSYRTLWSEAQEMLKDNSVYKSDDKIQEIMMEEKGDALAAFAEFIRELERDFEEERIHEKNRLKRQHRKFREGFCALLDDLHKHGYINSLSRWMDLFPKISKDDRFDNMLGIPGSTPLDLFKFFVEDLKSRYSDEKRIVKDILKDKQFTVEIKTSFDEFSDVVLADERSHTLDAGNIKSTFNSMXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLKQAAPPIEPSDQWDDVRERFEKEDAFQSIAMESERNRLFNEW 1802
WNTKEEAKQAFK+LL+EK VPS A+WEQA K+I++D R+ AL K++EKKQ FN YK Q +EKE+ R K KE +E Q +LE H +M S RY+KA +MF + WN+++ERDR ++++DVLFFL+KKEKE K+L N + + M ++Y T WSEAQ+ L DN + D+++Q + +K DAL F E IR LE++ EEE+ R +R+ RK RE F LD+LH+HG ++S+S WM+L+P IS D RF NMLG PGST LDLFKF+VEDLK+RY DEK+I+KDILKDK F VE+ T+F++F ++ + +RS TLDAGNIK FNS+ EKAE+RE++R ++E R+++RKES+F+SMLKQAAPPIE W+D+RERF KE AF+ I +ESER R+F ++
Sbjct: 390 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNM---DKEDALICFEEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTISSDIRFTNMLGQPGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFEDFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDF 796 HSP 2 Score: 112.079 bits (279), Expect = 4.819e-25 Identity = 45/73 (61.64%), Postives = 60/73 (82.19%), Query Frame = 3
Query: 177 WTEHTAPDGRTYYFNSETKTSLWTKPEDLKTEIEKQIDNCPWKEYKSDTGRAYFHNEETKESKWTVPEELQNL 395
WTEH +PDGRTYY+N+ETK S W KP+DLKT E+ + CPWKEYKSD+G+ Y++N +TKES+W P+EL++L
Sbjct: 146 WTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDL 218 The following BLAST results are available for this feature:
BLAST of TCONS_00058955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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