TCONS_00059010 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059010
Unique NameTCONS_00059010
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1108

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059010 ID=TCONS_00059010|Name=TCONS_00059010|organism=Clytia hemisphaerica|type=transcript|length=1108bp
TACGTACGTTtgtttttaatctttttaataGATTAATAATATTTAATAGG
ATAAATTGTGGTTGTTAATGATCTCTTTGGAATGGGCGCTGACATACACC
GCGAGGTCCTCTTTTAATTACATAGCATCTTTGTCTAAAAACAGGAATAA
AGCTCATGTATATTGtcaatatttttccaattttttttcaaaacacgcGA
TCAGCAAGGGAGCGCTTTGAATGGATATAATATGTAAAAATTTGACACAC
GTTTAAGTTCAATCTGCTTTTTTGTTGTTGCACTGTAGATCAGTGTTTCA
CTGCTGATTAATCATCATGACTTTGTTTACAGTTTTTGGTTTGATTTGCA
TCCTATTCATAAGTACCGTCGTTTCTAATTACGAAAATGTACTCGATGTT
GCAGCTTTCAATGTTCAAGTTTTTGGAGTTCACAAAATGAACAAACCACT
CCTTCACAAGTATTTACCAAAGATTGTGGCACGATAcgatttgattttga
ttcaaGAAATTCGTGATAGTTCTGGCGAAGCTATCCAGGAATTGATGAAA
CTCGTCCAACAGATTGATAACAGATACAAATTAGAGCTTAGCGAACGACT
CGGACGCTCGACTAGCAAAGAACAATATGGATATATTTACAGATCAGATT
GGTTAAGTGTGGTGGATTCGTACGTTTACGCTGATTCTAATGACCATTTC
GAACGTCCTCCTTTTGTTGTCCAATTCAAAAGCTCCAAAGCAGAGGTGAA
GAATTTTGTGACGATCGGCATCCACACCAAACCTGACGATGCAGAGAACG
AAATCAGCCGTCTCGTTGATGTCTATGATGACGCCGTAAACAAATGGTCT
GTCCAAAACGCTATCCTGATGGGAGATTTTAATGCTGGATGTAATTACGT
TAAATCGTATGATAATATCGCCTTGGCAACTGATAAACGATTTTATTGGA
TGATTGGTAACCGAGCTGATTCGACTACGAAAGATACTGATTGCCCGTAT
GATCGTATTGTTTTGGCTGGTTCGCAATTATTGAATGTCGTTGTGATGAA
TAGCCCACGTGTCTTTGATTTCGCCACTGCGTATGGCTTGACTGAAGATG
AGGTAATC
Run BLAST on NCBI

protein sequence of TCONS_00059010-protein

>TCONS_00059010-protein ID=TCONS_00059010-protein|Name=TCONS_00059010-protein|organism=Clytia hemisphaerica|type=polypeptide|length=264bp
MTLFTVFGLICILFISTVVSNYENVLDVAAFNVQVFGVHKMNKPLLHKYL
PKIVARYDLILIQEIRDSSGEAIQELMKLVQQIDNRYKLELSERLGRSTS
KEQYGYIYRSDWLSVVDSYVYADSNDHFERPPFVVQFKSSKAEVKNFVTI
GIHTKPDDAENEISRLVDVYDDAVNKWSVQNAILMGDFNAGCNYVKSYDN
IALATDKRFYWMIGNRADSTTKDTDCPYDRIVLAGSQLLNVVVMNSPRVF
DFATAYGLTEDEVI
Run BLAST on NCBI

transcript from alignment at scaffold_315:312022..314673-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059010 ID=TCONS_00059010|Name=TCONS_00059010|organism=Clytia hemisphaerica|type=transcript|length=2652bp|location=Sequence derived from alignment at scaffold_315:312022..314673- (Clytia hemisphaerica)
TACGTACGTTTGTTTTTAATCTTTTTAATAGATTAATAATATTTAATAGG
ATAAATTGTGGTTGTTAATGATCTCTTTGGAATGGGCGCTGACATACACC
GCGAGGTCCTCTTTTAATTACATAGCATCTTTGTCTAAAAACAGGAATAA
AGCTCATGTATATTGTCAATATTTTTCCAATTTTTTTTCAAAACACGCGA
TCAGCAAGGGAGCGCTTTGAATGGATATAATATGTAAAAATTTGACACAC
GTTTAAGTTCAATCTGCTTTTTTGTTGTTGCACTGTAGATCAGTGTTTCA
CTGCTGATTAATCATCATGACTTTGTTTACAGTTTTTGGTTTGATTTGCA
TCCTATTCATAAGGTAATTTCATATTTTATTGAATTCTAGCTTACACAAG
TAATGTCTATTTTTTTTCTCTGATTATTCGGATGTTTTGAGCTCAGAATC
TTGGGCCAACTTGTCTAGCTTTTTCTCGCTTTTGAATTTGATTTTAAAAT
GTAATTCTTTAAAGTATCAATCAAATGAGGTGAAATCATATTCAAAGAGT
GAAATTTTTTGGTTTTGAAATATATTTTTGATTAATTCTTTAAAGTATTT
ATTAATTTCAAACTGTCATATATCTTTAGTACCGTCGTTTCTAATTACGA
AAATGTACTCGATGTTGCAGCTTTCAATGTTCAAGTTTTTGGAGTTCACA
AAATGAACAAACCACTCCTTCACAAGTATTTACCAAAGGTATTGATTTAT
TTGTAGCCGACAAGATTTCTAGATACAACCTCTACACTTTTTTTATAAGA
ACATTCAACATTTTTGCAGCCTTCGGATGTTCTTAACATTTTAAGTTTTA
AGCCTAAAAATGTTCTTAACATGTTCTTAATTTCACCATTTTTGAGCATT
TTTGTCCATTTTCCTAAGAAATTGTGCTTAGAGTCTGCAAAGCCTTAAAA
TTTTCCCAACTTGTTCTTGACATTTTGGCATTTCGAAGCCTTATGTTCTT
ATATAGTTTGTTCATACAAAAAAAAACGTGTATTTGTCTTTATTTTATTT
AAAGTTAAGGAATTGAGAAATAAATCAAAGATTTATTGGGTGAAACGCTA
ACTTTTCCCTCGTAATAATCGAAAAGAACCGTTTTATCGTCACTTTTCTA
ATTCATTTAGATTGTGGCACGATACGATTTGATTTTGATTCAAGAAATTC
GTGATAGTTCTGGCGAAGCTATCCAGGAATTGATGAAACTCGTCCAACAG
ATTGATAACAGGTTTGTTTCAAAGCTAAATCTTGAATTCATAATTTTCCA
AACTTTTATTAACACAAGTTCATTAAGCAATCTTAACCTTGACTACATAT
TCCATGTCAAGCCACAGAGTTGATATCAAAAAATATATATTCTTGATTTT
CATTTAGAGTAGGTTCTTATTTCATATTTCATTTTCTACAGATACAAATT
AGAGCTTAGCGAACGACTCGGACGCTCGACTAGCAAAGAACAATATGGAT
ATATTTACAGGTAACTCTTCTAAAAGATCTGACAGAACTACAGAATGTAC
ATCCTGGAGTAGTATTTAAAACAGTCAAATATGAAATTTCTTAGGAAAAA
AAAATTCAAAATTAGTTTGCTAATATTTGAAAGCGGCGAGTGAAGTCTCC
ATAGCTCGAATACACACGGGGGATACAAATTTGTTTAAGTTGTGCGGAAA
TCTCGAGGTATGTAAGGAATGTAAGGAATTTTTGATTGAAGGGACCAGAA
AACGTATTCGAGTTAAGAAGATATTTTGAATTTTCTAGGTTCGAATTATG
GAGACACACTGTATATATAGTGGTAAATAAAAAACAATATGATGCTTTTC
TTTTCAGATCAGATTGGTTAAGTGTGGTGGATTCGTACGTTTACGCTGAT
TCTAATGACCATTTCGAACGTCCTCCTTTTGTTGTCCAATTCAAAAGCTC
CAAAGCAGGTATTGAAACTAAAATGTAATTCGTTCACTTAGCCTGGTTGA
ACTTAAAACATCAAGTTCTGTATTATAACATCACCGGTCCTATTTTTTAG
TACTTTCACACATCATATCAAATATAAATCAGTAAAAGTCAAAGTGGTGG
TTTTACAGCAATCTTCCTTTTCAAAAGTGGTTTTGGACCATGTCGAACTT
ATCAGAGGAAGCGATTTGTAATTGTAATTTCATTGTATTTTAACGTACGT
TGCACTCTTTCGCATGGTTCCGACGTACTTGTTTTATTTTCTTAAATCTG
CCAGTGCTTTTTACCTTTTTTGAACTTTTTTTTACAGAGGTGAAGAATTT
TGTGACGATCGGCATCCACACCAAACCTGACGATGCAGAGAACGAAATCA
GCCGTCTCGTTGATGTCTATGATGACGCCGTAAACAAATGGTCTGTCCAA
AACGCTATCCTGATGGGAGATTTTAATGCTGGATGTAATTACGTTAAATC
GTATGATAATATCGCCTTGGCAACTGATAAACGATTTTATTGGATGATTG
GTAACCGAGCTGATTCGACTACGAAAGATACTGATTGCCCGTATGATCGT
ATTGTTTTGGCTGGTTCGCAATTATTGAATGTCGTTGTGATGAATAGCCC
ACGTGTCTTTGATTTCGCCACTGCGTATGGCTTGACTGAAGATGAGGTAA
TC

Coding sequence (CDS) from alignment at scaffold_315:312022..314673-

>TCONS_00059010 ID=TCONS_00059010|Name=TCONS_00059010|organism=Clytia hemisphaerica|type=CDS|length=4752bp|location=Sequence derived from alignment at scaffold_315:312022..314673- (Clytia hemisphaerica)
AGGTGAAGAATTTTGTGACGATCGGCATCCACACCAAACCTGACGATGCA
GAGAACGAAATCAGCCGTCTCGTTGATGTCTATGATGACGCCGTAAACAA
ATGGTCTGTCCAAAACGCTATCCTGATGGGAGATTTTAATGCTGGATGTA
ATTACGTTAAATCGTATGATAATATCGCCTTGGCAACTGATAAACGATTT
TATTGGATGATTGGTAACCGAGCTGATTCGACTACGAAAGATACTGATTG
CCCGTATGATCGTATTGTTTTGGCTGGTTCGCAATTATTGAATGTCGTTG
TGATGAATAGCCCACGTGTCTTTGATTTCGCCACTGCGTATGGCTTGACT
GAAGATGAGGTAATCATCAGATTGGTTAAGTGTGGTGGATTCGTACGTTT
ACGCTGATTCTAATGACCATTTCGAACGTCCTCCTTTTGTTGTCCAATTC
AAAAGCTCCAAAGCAGATACAAATTAGAGCTTAGCGAACGACTCGGACGC
TCGACTAGCAAAGAACAATATGGATATATTTACAGATTGTGGCACGATAC
GATTTGATTTTGATTCAAGAAATTCGTGATAGTTCTGGCGAAGCTATCCA
GGAATTGATGAAACTCGTCCAACAGATTGATAACAGTACCGTCGTTTCTA
ATTACGAAAATGTACTCGATGTTGCAGCTTTCAATGTTCAAGTTTTTGGA
GTTCACAAAATGAACAAACCACTCCTTCACAAGTATTTACCAAAGATGAC
TTTGTTTACAGTTTTTGGTTTGATTTGCATCCTATTCATAAGAGGTGAAG
AATTTTGTGACGATCGGCATCCACACCAAACCTGACGATGCAGAGAACGA
AATCAGCCGTCTCGTTGATGTCTATGATGACGCCGTAAACAAATGGTCTG
TCCAAAACGCTATCCTGATGGGAGATTTTAATGCTGGATGTAATTACGTT
AAATCGTATGATAATATCGCCTTGGCAACTGATAAACGATTTTATTGGAT
GATTGGTAACCGAGCTGATTCGACTACGAAAGATACTGATTGCCCGTATG
ATCGTATTGTTTTGGCTGGTTCGCAATTATTGAATGTCGTTGTGATGAAT
AGCCCACGTGTCTTTGATTTCGCCACTGCGTATGGCTTGACTGAAGATGA
GGTAATCATCAGATTGGTTAAGTGTGGTGGATTCGTACGTTTACGCTGAT
TCTAATGACCATTTCGAACGTCCTCCTTTTGTTGTCCAATTCAAAAGCTC
CAAAGCAGATACAAATTAGAGCTTAGCGAACGACTCGGACGCTCGACTAG
CAAAGAACAATATGGATATATTTACAGATTGTGGCACGATACGATTTGAT
TTTGATTCAAGAAATTCGTGATAGTTCTGGCGAAGCTATCCAGGAATTGA
TGAAACTCGTCCAACAGATTGATAACAGTACCGTCGTTTCTAATTACGAA
AATGTACTCGATGTTGCAGCTTTCAATGTTCAAGTTTTTGGAGTTCACAA
AATGAACAAACCACTCCTTCACAAGTATTTACCAAAGATGACTTTGTTTA
CAGTTTTTGGTTTGATTTGCATCCTATTCATAAGAGGTGAAGAATTTTGT
GACGATCGGCATCCACACCAAACCTGACGATGCAGAGAACGAAATCAGCC
GTCTCGTTGATGTCTATGATGACGCCGTAAACAAATGGTCTGTCCAAAAC
GCTATCCTGATGGGAGATTTTAATGCTGGATGTAATTACGTTAAATCGTA
TGATAATATCGCCTTGGCAACTGATAAACGATTTTATTGGATGATTGGTA
ACCGAGCTGATTCGACTACGAAAGATACTGATTGCCCGTATGATCGTATT
GTTTTGGCTGGTTCGCAATTATTGAATGTCGTTGTGATGAATAGCCCACG
TGTCTTTGATTTCGCCACTGCGTATGGCTTGACTGAAGATGAGGTAATCA
TCAGATTGGTTAAGTGTGGTGGATTCGTACGTTTACGCTGATTCTAATGA
CCATTTCGAACGTCCTCCTTTTGTTGTCCAATTCAAAAGCTCCAAAGCAG
ATACAAATTAGAGCTTAGCGAACGACTCGGACGCTCGACTAGCAAAGAAC
AATATGGATATATTTACAGATTGTGGCACGATACGATTTGATTTTGATTC
AAGAAATTCGTGATAGTTCTGGCGAAGCTATCCAGGAATTGATGAAACTC
GTCCAACAGATTGATAACAGTACCGTCGTTTCTAATTACGAAAATGTACT
CGATGTTGCAGCTTTCAATGTTCAAGTTTTTGGAGTTCACAAAATGAACA
AACCACTCCTTCACAAGTATTTACCAAAGATGACTTTGTTTACAGTTTTT
GGTTTGATTTGCATCCTATTCATAAGAGGTGAAGAATTTTGTGACGATCG
GCATCCACACCAAACCTGACGATGCAGAGAACGAAATCAGCCGTCTCGTT
GATGTCTATGATGACGCCGTAAACAAATGGTCTGTCCAAAACGCTATCCT
GATGGGAGATTTTAATGCTGGATGTAATTACGTTAAATCGTATGATAATA
TCGCCTTGGCAACTGATAAACGATTTTATTGGATGATTGGTAACCGAGCT
GATTCGACTACGAAAGATACTGATTGCCCGTATGATCGTATTGTTTTGGC
TGGTTCGCAATTATTGAATGTCGTTGTGATGAATAGCCCACGTGTCTTTG
ATTTCGCCACTGCGTATGGCTTGACTGAAGATGAGGTAATCATCAGATTG
GTTAAGTGTGGTGGATTCGTACGTTTACGCTGATTCTAATGACCATTTCG
AACGTCCTCCTTTTGTTGTCCAATTCAAAAGCTCCAAAGCAGATACAAAT
TAGAGCTTAGCGAACGACTCGGACGCTCGACTAGCAAAGAACAATATGGA
TATATTTACAGATTGTGGCACGATACGATTTGATTTTGATTCAAGAAATT
CGTGATAGTTCTGGCGAAGCTATCCAGGAATTGATGAAACTCGTCCAACA
GATTGATAACAGTACCGTCGTTTCTAATTACGAAAATGTACTCGATGTTG
CAGCTTTCAATGTTCAAGTTTTTGGAGTTCACAAAATGAACAAACCACTC
CTTCACAAGTATTTACCAAAGATGACTTTGTTTACAGTTTTTGGTTTGAT
TTGCATCCTATTCATAAGAGGTGAAGAATTTTGTGACGATCGGCATCCAC
ACCAAACCTGACGATGCAGAGAACGAAATCAGCCGTCTCGTTGATGTCTA
TGATGACGCCGTAAACAAATGGTCTGTCCAAAACGCTATCCTGATGGGAG
ATTTTAATGCTGGATGTAATTACGTTAAATCGTATGATAATATCGCCTTG
GCAACTGATAAACGATTTTATTGGATGATTGGTAACCGAGCTGATTCGAC
TACGAAAGATACTGATTGCCCGTATGATCGTATTGTTTTGGCTGGTTCGC
AATTATTGAATGTCGTTGTGATGAATAGCCCACGTGTCTTTGATTTCGCC
ACTGCGTATGGCTTGACTGAAGATGAGGTAATCATCAGATTGGTTAAGTG
TGGTGGATTCGTACGTTTACGCTGATTCTAATGACCATTTCGAACGTCCT
CCTTTTGTTGTCCAATTCAAAAGCTCCAAAGCAGATACAAATTAGAGCTT
AGCGAACGACTCGGACGCTCGACTAGCAAAGAACAATATGGATATATTTA
CAGATTGTGGCACGATACGATTTGATTTTGATTCAAGAAATTCGTGATAG
TTCTGGCGAAGCTATCCAGGAATTGATGAAACTCGTCCAACAGATTGATA
ACAGTACCGTCGTTTCTAATTACGAAAATGTACTCGATGTTGCAGCTTTC
AATGTTCAAGTTTTTGGAGTTCACAAAATGAACAAACCACTCCTTCACAA
GTATTTACCAAAGATGACTTTGTTTACAGTTTTTGGTTTGATTTGCATCC
TATTCATAAGAGGTGAAGAATTTTGTGACGATCGGCATCCACACCAAACC
TGACGATGCAGAGAACGAAATCAGCCGTCTCGTTGATGTCTATGATGACG
CCGTAAACAAATGGTCTGTCCAAAACGCTATCCTGATGGGAGATTTTAAT
GCTGGATGTAATTACGTTAAATCGTATGATAATATCGCCTTGGCAACTGA
TAAACGATTTTATTGGATGATTGGTAACCGAGCTGATTCGACTACGAAAG
ATACTGATTGCCCGTATGATCGTATTGTTTTGGCTGGTTCGCAATTATTG
AATGTCGTTGTGATGAATAGCCCACGTGTCTTTGATTTCGCCACTGCGTA
TGGCTTGACTGAAGATGAGGTAATCATCAGATTGGTTAAGTGTGGTGGAT
TCGTACGTTTACGCTGATTCTAATGACCATTTCGAACGTCCTCCTTTTGT
TGTCCAATTCAAAAGCTCCAAAGCAGATACAAATTAGAGCTTAGCGAACG
ACTCGGACGCTCGACTAGCAAAGAACAATATGGATATATTTACAGATTGT
GGCACGATACGATTTGATTTTGATTCAAGAAATTCGTGATAGTTCTGGCG
AAGCTATCCAGGAATTGATGAAACTCGTCCAACAGATTGATAACAGTACC
GTCGTTTCTAATTACGAAAATGTACTCGATGTTGCAGCTTTCAATGTTCA
AGTTTTTGGAGTTCACAAAATGAACAAACCACTCCTTCACAAGTATTTAC
CAAAGATGACTTTGTTTACAGTTTTTGGTTTGATTTGCATCCTATTCATA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037161XLOC_037161Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059010-proteinTCONS_00059010-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059010-exon-scaffold_315-1575043694:314311..314673TCONS_00059010-exon-scaffold_315-1575043694:314311..314673Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1575043694:313936..314044TCONS_00059010-exon-scaffold_315-1575043694:313936..314044Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1575043694:313413..313513TCONS_00059010-exon-scaffold_315-1575043694:313413..313513Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1575043694:313164..313232TCONS_00059010-exon-scaffold_315-1575043694:313164..313232Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1575043694:312716..312816TCONS_00059010-exon-scaffold_315-1575043694:312716..312816Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1575043694:312022..312386TCONS_00059010-exon-scaffold_315-1575043694:312022..312386Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1510915933:314311..314673TCONS_00059010-exon-scaffold_315-1510915933:314311..314673Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1510915933:313936..314044TCONS_00059010-exon-scaffold_315-1510915933:313936..314044Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1510915933:313413..313513TCONS_00059010-exon-scaffold_315-1510915933:313413..313513Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1510915933:313164..313232TCONS_00059010-exon-scaffold_315-1510915933:313164..313232Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1510915933:312716..312816TCONS_00059010-exon-scaffold_315-1510915933:312716..312816Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1510915933:312022..312386TCONS_00059010-exon-scaffold_315-1510915933:312022..312386Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1491911889:314311..314673TCONS_00059010-exon-scaffold_315-1491911889:314311..314673Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1491911889:313936..314044TCONS_00059010-exon-scaffold_315-1491911889:313936..314044Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1491911889:313413..313513TCONS_00059010-exon-scaffold_315-1491911889:313413..313513Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1491911889:313164..313232TCONS_00059010-exon-scaffold_315-1491911889:313164..313232Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1491911889:312716..312816TCONS_00059010-exon-scaffold_315-1491911889:312716..312816Clytia hemisphaericaexon
TCONS_00059010-exon-scaffold_315-1491911889:312022..312386TCONS_00059010-exon-scaffold_315-1491911889:312022..312386Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:312022..314673 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
59.0375	58.8408	18.0071	11.0599	187.862	136.13	112.99	109.248	55.4364	63.7239	47.0587	47.8342	41.2587	43.0111	18.4872	21.4989	29.5955	33.6746	41.9926	67.1205	33.8822	34.0022	21.2666	20.9799	7.58428	9.07547	34.2531	35.2276	2.80329	4.28417
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016202DNase_I
IPR005135Endo/exonuclease/phosphatase
Vocabulary: Molecular Function
TermDefinition
GO:0004536deoxyribonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006308DNA catabolic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006308 DNA catabolic process
molecular_function GO:0004536 deoxyribonuclease activity
Blast
[Close]
BLAST of TCONS_00059010 vs. Swiss-Prot (Human)
Match: DNAS1 (Deoxyribonuclease-1 OS=Homo sapiens GN=DNASE1 PE=1 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.236e-61
Identity = 108/243 (44.44%), Postives = 150/243 (61.73%), Query Frame = 2 
Query:  392 LDVAAFNVQVFGVHKMNKPLLHKYLPKIVARYDLILIQEIRDSSGEAIQELM-KLVQQIDNRYKLELSERLGRSTSKEQYGYIYRSDWLSVVDSYVYADS-----NDHFERPPFVVQFKSSKAEVKNFVTIGIHTKPDDAENEISRLVDVYDDAVNKWSVQNAILMGDFNAGCNYVKS--YDNIALATDKRFYWMIGNRADSTTKDTDCPYDRIVLAGSQLLNVVVMNSPRVFDFATAYGLTE 1096
            L +AAFN+Q FG  KM+   L  Y+ +I++RYD+ L+QE+RDS   A+ +L+  L Q   + Y   +SE LGR++ KE+Y ++YR D +S VDSY Y D      ND F R P +V+F S   EV+ F  + +H  P DA  EI  L DVY D   KW +++ +LMGDFNAGC+YV+   + +I L T   F W+I + AD+T   T C YDRIV+AG  L   VV +S   F+F  AYGL++
Sbjct:   23 LKIAAFNIQTFGETKMSNATLVSYIVQILSRYDIALVQEVRDSHLTAVGKLLDNLNQDAPDTYHYVVSEPLGRNSYKERYLFVYRPDQVSAVDSYYYDDGCEPCGNDTFNREPAIVRFFSRFTEVREFAIVPLHAAPGDAVAEIDALYDVYLDVQEKWGLEDVMLMGDFNAGCSYVRPSQWSSIRLWTSPTFQWLIPDSADTTATPTHCAYDRIVVAGMLLRGAVVPDSALPFNFQAAYGLSD 265
The following BLAST results are available for this feature:
BLAST of TCONS_00059010 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNAS11.236e-6144.44Deoxyribonuclease-1 OS=Homo sapiens GN=DNASE1 PE=1... [more]
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