TCONS_00058971 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058971
Unique NameTCONS_00058971
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length806

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058971 ID=TCONS_00058971|Name=TCONS_00058971|organism=Clytia hemisphaerica|type=transcript|length=806bp
attatttttaaagacagcATATTTTGCAATACACCTTAAATACGATTTAT
TGAAatcttctttttgttccttttaGACGTAAAATATTTGCACACGGGAC
TTCGAAATCGATTAAAAGAGAATATCACAAAAGCTTCACCTTCACTCGGA
CGTGATGCATCTTATACAAAATCTTCTTTAATAGATCGGCTACCAGCTTA
CTTGACTGTCCAATTCGTCCGAttttattataaagaaaaagaaaacgtcA
ATGCCAAAGTATTAAAGGATGTCAAATTCCCAATGACTTTGGATGTGTTC
GATCTATGTTCATCAGATCTGCAAAATAAACTTCAACCCATGCGAGATCG
TTTCAAGGCAGAAGACGAAAAGAACGTCCTCAAAAAAGTGGAAGCAGCGA
AAGCAGGAGGCAAGCCAATGGAGGTGGacgagaagaaaaaagaaatcccT
TATTCCTTCACTGAAGACGTTGGTAGCAACAACAGTGGATATTACGAATT
AAAAGCAGTACTCACACATAAAGGTCGTTCATCCACATCTGGTCATTACG
TCGGATGGGTCCGCATCGGTGGAGATAAATGGGTGAAGTGCGACGATGAC
ACAGTATCACCAATACTTGAGGCTGACGTCCTTAAACTTTCTGGTGGAGG
TGATTGGCATTGTGCTTATGTTCTGCTTTACGGACCAAAGGTGTTGAAAG
TTGACGAAGAATAAATTGGATTTGAGGATGATTCTCAAGAACCCAACACG
CAAAGGGaaaATGAAATCTCAAAATCTCTTTTGTGGCGAGCTTCAAAGAA
GGTAAC
Run BLAST on NCBI

transcript from alignment at scaffold_315:336061..347234+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058971 ID=TCONS_00058971|Name=TCONS_00058971|organism=Clytia hemisphaerica|type=transcript|length=11174bp|location=Sequence derived from alignment at scaffold_315:336061..347234+ (Clytia hemisphaerica)
attatttttaaagacagcATATTTTGCAATACACCTTAAATACGATTTAT
TGAAatcttctttttgttccttttaGACGTAAAATATTTGCACACGGGAC
TTCGAAATGTAAGTAAAGTTATTATGTTAAATGTTACCCGCCTAGATTAA
CgaagtttttttattgttttcaagaTATTTGCCTTGATGACCAAAAGGCT
GCAAATtgcaaaataatgttttctctATTATTATTCCAGCGATTAAAAGA
GAATATCACAAAAGCTTCACCTTCACTCGGACGTGATGCATCTTATACAA
AATCTGTAAGTCTTTAAATATTCTTCTTTTCTTTGCCACCAGCCCAAGGA
CTCACCTCTAGATTTTTAAGTTGTCTAAGCTTTAATTATGATATGATTTT
GCTATAATTGTAGTAGTGCTGTTGTTATAGAACATGTCAACATGTCAACT
CGAtactctctgaaattaattcttttgtAAACTACAATGCCTTATACCGG
GCGAACCCATGTCATGTGTGATAAGGGGTGTGGAACCTCAAGAAACCTGT
CTGTAACTGTACACTGTTCGGGGACGTGCCCTACCCAGATGCCATAAAAC
TTTTGCATAATGATGAGATAAATAATATCTAGACCGCTCAATACAGTATG
TGTTTTTGTTCAGTCTTTAATAGATCGGCTACCAGCTTACTTGACTGTCC
AATTCGTCCGAttttattataaagaaaaagaaaacgtcAATGCCAAAGTA
TTAAAGGTATGTACTGAAgctatatttttgaaaaattttttttccatgta
ATTCAAGTTGAATTTGATAGAATCATGTTTCATAAAAATGTTACTGTTAT
GGAAAGCTTATTATCTAAACATTTGTATAATCTTTCAGGATGTCAAATTC
CCAATGACTTTGGATGTGTTCGATCTATGTTCATCAGATCTGCAAAATAA
ACTTCAACCCATGCGAGATCGTTTCAAGGCAGAAGACGAAAAGAACGTCC
TCAAAGTATGCGAGACTGAAAAGCATTCTTTTTAAGGACTAGCTCTATTA
CATcattgtgtcacagacccggtggaaaaatatGCTTCATTCTAATCCGG
ACTTAGAAAGTCACTATATTTTAGCTGCAAACAATAGCATTCAAATCATC
TTCCATTAGAAATATGCGATTTCCTCTCCATAAATTTTTGTATAAGTTTT
TTGTGTGCTCACAACAATACCATACCTTGCTTTGGCCAAGTAGGgcattt
gaaaataattttttgtcaaaaatttcttACTTGTATATTATCTTACTTGT
CTTACTTAGTATCGCCATGTAAATAATAGAGTAAATTATTGTTAACTctt
ttcatcattttgattCGAATGCTATTTATTGTTTTTCTTCTCTCAGAAAG
TGGAAGCAGCGAAAGCAGGAGGCAAGCCAATGGAGGTGGacgagaagaaa
aaagaaatcccTTATTCCTTCACTGAAGGTTTGTTCGGATCTTCCTTTTC
GGACaaacctcggaggtcctttaaattaacctttgttcttTGTTCGTCTT
TTatcagcttttctcaggattggtcCATTAGTTTTTAGTGACGCAAAATG
ACAGTACCCAAGAGtccgatattatatttatatcATGATTGGAAAGAGCT
ATGAACTTGTTATACTGTTTTAGTCTCGTTTCTTACTATTGTCGCCATTC
TTTcctattttctttttacatcaatcttcaggtaggtaaATTCAGCAAGT
AGCTGAAGTTAACAATGTTAATTCTACCTTTTTCATTTTACAGTATATAA
ctttataaatttctttcttttgtgcATTTCGAGGGTGAAtcttattgttt
tgttttcaattatcaGACGTTGGTAGCAACAACAGTGGATATTACGAATT
AAAAGCAGTACTCACACATNATCCGGACTTAGAAAGTCACTATATTTTAG
CTGCAAACAATAGCATTCAAATCATCTTCCATTAGAAATATGCGATTTCC
TCTCCATAAATTCTCAGCGGGTCATTGAGACAGTTGTTCTTCTGTATAAG
TTTTTTGTGTGCTCACAACAACACCATACCTTGTTTTGGCCAAGTAGGgc
atttgaaaataattttttgtcaaatatctCTTACTTGTATATTATCTTAC
TTGTCTTACTTAGTATCGCCATGTAAATAATAGAGTAAATTATTGTTAAC
TcttttcatcattttgattCGAATGCTATTTATTGTTTTTCTTCTCTCAG
AAAGTGGAAGCAGCGAAAGCAGGAGGCAAGCCAATGGAGGTGGacgagaa
gaaaaaagaaatcccTTATTCCTTCACTGAAGGTTTGTTCGGATCTTCCT
TTTCGGACaaacctcggaggtcctttaaattaacctttgttcttTGTTCG
TCTTTTatcagcttttctcaggattggtcCATTAGTTTTTAGTGACGCAA
AATGACAGTACCCAAGAGtccgatattatatttatatcATGATTGGAAAG
AGCTATGAACTTGTTATACTGTTTTAGTCTCGTTTCTTACTATTGTCGCC
ATTCTTTcctattttctttttacatcaatcttcaggtaggtaaATTCAGC
AAGTAGCTGAAGTTAACAATGTTAATTCTACCTTTTTCATTTTACAGTAT
ATAActttataaatttctttcttttgtgcATTTCGAGGGTGAAtcttatt
gttttgttttcaattatcaGACGTTGGTAGCAACAACAGTGGATATTACG
AATTAAAAGCAGTACTCACACATAAAGGTCGTTCATCCACATCTGGTCAT
TACGTCGGATGGGTCCGCATCGGTGGAGGTGAGGGTTTCCTTTAATGACC
TTATCATTCGTAAAAGGCTTTTGCTATACCCtatctaagttttttaaatt
aaaaaagttgTTGAAAATTTCGTAAGAGCCCTTATATAACTATGGTTTCA
TGTGACTTTGCACCAATTACAAATTAAGTAGAAAACTAAAATAAGGGCTT
CTTCTAAActctttgaaaaaactttcgtcATAGATAAATGGGTGAAGTGC
GACGATGACACAGTATCACCAATACTTGAGGCTGACGTCCTTAAACTTTC
TGGTGGAGGTAATGCCATCTTCTTTTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagcggttttttgagattt
tctcgagattttctcattagttttttgcgattttttgcacatagatgcac
attagtactgccgaaaaggtgtcgaaaaccgaaAATCTGtgatgaaataa
tgaaaactgaaaactaaatgttttttttactttagttttaattttctctg
aatgattgattaaagtgtcgatattatttttctttcgccgttaaacatcg
atgcgtttcttaattgctttctccgttccaatagatatataaatagaaat
ttaaaattatacattacttccattaaattctaattattcgttttataaat
aggtaggtccattaaagtattacttgtctttttcttttttcttaattGGC
ATGCGGTGAAAACATTTTATACTTATTTACACGTTGATTTTGTAAGGCAT
ACCACAGCTTTGGCTCCGAATTCGTTTTCACTCGTTTCAAGTCGACATTT
CATAGTCGATATATTATTTTGATAGCACAGTCAAAACGGCCTGGCATAAA
CATCTTTCATATTTCAAATTAGTAAGCTACTCAGTGTCGAATTTACGATA
CGATACGATATGATATGTGATCTAgtgttaaatttcttttttttgttgat
cGCTTATCCCACTTCATTTTGACGCTATGACCTCGTTTCAAATCAGAATT
TAGTACAAAAATGCTTTAGAAGATAATCAAGTTCCTAGAGATGATCTAAT
ACTTTCAGCGTTGTGAatctaaatatcaaaatatatctATTGTAGAAGGA
GAGTACCTAAGGATTAAAAAACTTACCATTCTGCTGAAATTCTGGGAAAA
AAAGCTGCAAAAGTCCTAATTTTTTGCACTTACTTTCTGGTTTCGTTTCT
TTAATCCTTGCTTTCTCTTACTTTTTCCTACTTTTGATATCTCGCAGGCT
TGATTTTAAGTAGCAGAATATATTTTGCAACAAATTATTTCCTTTTAAGG
TGATTGGCATTGTGCTTATGTTCTGCTTTACGGACCAAAGGTGTTGAAAG
TTGACGAAGAATAAATTGGATTTGAGGATGATTCTCAAGAACCCAACACG
CAAAGGGaagttagaattttttttgatgttttttttagttttttgtttgt
tttgtgtaTGAATTTgctaaaatatgaaatttcactTTACGATAGTTCAA
TTACCTGATTCAAGTTTTTTTTCCTGGGTGGGAGTGACAAAATTTAGAAG
AAGTGGTCATTTTCCTAATAGATCATCTCATACTgcatcttatcggagtt
ttttgatttttctactCCGATAAGGTATATTATTTCCTTGGTTCTGAGTA
ATTATATTTCctgatttaattttgaaaaactttcaaatttgttACCGTTA
AATAATTAGCTCTTCCATATCATGCTGAACAGAAATTGATTACTGGAAGG
GTTGTTCTaaattattcttcatttttgtttatCGAAGAAAAGCATACTTT
AGTTTtgtaaacagaaaagaaaacaCTCTTCAGTTCATCGTTATTTTCAC
ATCAGGCAAACTACTTTAATATTTCCTTCTTTGAATTTCACTGCTTGTTT
ACATTCGGAAGAGAGCGGACCTCTTAGTGCAATatgttaacttttttttg
atattGAGGGATATATTCTTTCTTGTAATTTTCCCCAACATGTCATAAAC
GTGTACCTCGAATAAACACCCAGGGTGGGGGACGTTTATTTGATCGGGTT
TAGATTGAGGGTcagtttaatgaccaatttttgaGTTGTTTTGCTCTTTC
ATCACTGTTCACTTTAGAGATATATAAATACAGGTCTTGAAAAATCAGTG
TGAATACTagctacttgtttcaaataaacgcccctcctacaATAGAGGCA
TTTACTAGTTTATTCAAGGGTGTTAAACAATGGGGCGTTCATTAGAGGTA
AAACGATAATCTATCAGTTGCATACCATAATAAACCCTGCACAAAGTTGC
ATTCGCCATTTCTAATCGGNCGATAATCTATCAGTTGCGTACCATAATAA
ACCCTGCACAAAGTTGCATCCGCCATTTCTAATCGGTTTTTTTTAGTGGT
ACctgcaaagaagccattgcagtatTAAAAATTAACGTCGCCAACGGTGC
TACATCGtcaaaagtattcgaggaaaagtaAATTTAGCGCTCTCGATaaa
cttatttttaaataattaaacTCAGTGGTTGCATGCAATCTTAATCATTG
TTAGTACCAGAAAGAATCTTTTCAGGTTTCTTTTCCACTGTAAAAATCAT
AATTTgtgtttagaaatatttgttgaaagctatttgattttattcttaaa
atagaatttgaaatttgtcgACAATTGTCATGACTCTCTGTAATGACACA
GAactgacttttttgttttttttgacaaatcggATTTTCGTCTAAGGTGA
GATGTGCACGAATGCTTTTAAATCTGAACACATAGACGATACAGTAATAA
TGTGTTAAGCGTCATTCGTTTCGCGTGTTTTGAATTCTTTCATACTCAGG
CTGTAAGTATCTGATTATTCTTAGATTCTTGTTGTAACATTAGGAGaagg
agttttttattttcttacaaagaactcaaaaatatgaaattttgttcGTG
CAGTGCTGAGGAACTGAGGATAGTGAATCTTCGAATTTGCGTTTTTCGTT
TCAGAAGTTATCTTATTAGAAACTTTCgctttgttttcttttcgtaCCAT
GACCTCAAATCTTAGTAAGTATCAACAGAGATTTCACTTTAGAAATACGT
CGTTGCTTTTCTTACGAGCCATATCAATCACAGTGTTGTTTTAACTTACT
GGCGTCTATCATTCCATGCGTGAAGtttgtgttttattttctaATAGTAG
CAGGTTTTTTTCCCTACTGTAGttcttcattttgtgttttgtgTTAATTT
CCTTTTTAAAGATGTTTTGCTTTACTCCTTTATGCTGCGAAATGTTTCgt
gtttttactatttttactTTACATTATTCTTATGGGGAAATTCTTAAAAT
GACCTAGGGGGCAACGGAAGCTATTTGCTTGttattacacgtttttataa
gaacaaactatataagaacacaaggcttccatattccatggccaaaatgt
ttagaacaagttaagaacattttaaggcttttcagactctaaaacacctg
atttcttaggaaaatggacaaaaatgctcaaaaaaagattaaaataagaa
catgttaagaacatttttaggcttaaaatgaagttaagaacatccggagg
cttcaaaaattttggatgctcttataaaaaaacgtgtattcctatgggta
aatttttaaaatgaccTAGGGAGCATCGGAAGCTATTTGCTTGTTATTAT
ACAAACTAATGTACAAGATACGTTTTcgtttactttattttttttgatgc
TTGCCGCTGGACcgcatatttttaaaaaaattgaacatgTAAATATCTGT
TctctttaaagtctttttaaagCCGGCTTCGTTTGATATCTTGATGACGT
CACGTAGCTGTGGGAAAATTACTTGATTGTTGAATATATTTGTGCGTGAG
CGAAATGCTTACGAAAATGGTTGAAAGGGTTTGAAAAATGCATAGGTTGT
TTCTCTCGCACCCATCACTTTCTTCATAGTACTCGATATGACTTTCTTAA
CAGTTTTTTTTGTTAGAACAAGATCTAAGCAGTCTCTTTAAGCATTCGTG
CAACATTCAGACAAGTATAATCAAGTATAATCAACTGGAGGGATTAAGGT
GTAAATGGTTATAGATAATTCCTTGGTCCCTTTTTTACTACTATCAGTAT
AATTAGCATTTGATATAGCATCTTCATCTTATATTGCATTGCCGATCAAA
AATGCGTGCTTTAGTTAAAGTGATTATttagattcttataaataaataat
gtCAAAGTGTTTGATAGCGACCACTGAATTGTTAACTAAACAATATGCAA
ACTTCAAACCAGTTTTTTCTACAATTCATCTGTCACAAACAACTTCACAC
TCTTTGCTCCATTACTGAGAGAAAACCTTTCGCCATGCATATCACGAACA
ATATGTGTTTGATTGAAATGAATTGTGTTGGTAGGTTGTACTGTTCTTTT
AGCTTTTCGTAaccaatttgaagaaaaattgaataagaatTTCAATGTTG
GAAAGCTGagggaatagaccttttcgaggaaaactgagcaaaaaagccTT
TACATATTTTACTTCTTCATTCTTTTCTCTTCTCATAAAGTTGCCTCGAA
TGTTGTGCTATATATGATTTTGAAATATATGTATTTCACTTCGCTTCAAT
TTGGATATTGTTTGAAGCTTCTAGGGGTATTCTATACCCTAAAAACTTGA
TGAAAACGAGGGGCTGGAAAGGGAAGAAAACCTCATTTGCTTCTATTTCC
TTTGACAAACGAACCCTTGATTATAAAGTGCGAAATGGAGGGATGAGTAA
TATTGTTTTGTTCTGTTAACACGTGCTCCCTTTGCAAAACGGTGTAAAAA
AACTTCATtacatttttcttcattttccttttacTAGATCAAACGattga
aacaaaacaaatatcgTTTTCATTCGTTCTCTTTATTTATTGTTAATCCC
TCATTAATCATTCACCTATTGTGtatatttattgttttcttttttcgtta
tttttctttttcaagatattttgctgtcttttcattctattttaaAGGGA
AAATGGGATCCCTGGAATGTGAAAAAGGTTACACACTTAAACAGggtttg
ttttttctatttattgTTTGCAAATCAAAGCTATCAAAGGATGACACACT
CATTGGCTCTTTAGACCTgctgttttgttgttgtttatttGTTGCTTGTT
TGAAGAAGTGCAATCACCTTTTTTCGTAATTTGAATCTATTCTGTATTCA
TCTTTAAAGTCGTACCTAAATGAGAAGTAACTGAGATGAGATGAGAATTT
TAAGTTTGGCGACTCTATGTCATATTGCTAATTATAGAGAATTCAAAGTA
GTTGCTATCATATGAAACCCCAGTGTGAGTGTGTTTATTTCATTAGTATA
TTAGTATAATGTGCCATGAACAAATGCCATCCCAAATCCCTTTTTTCCTC
ACTTTTAACACAACTATgaaatgatatttttatgaatgaaaggaaagtac
acattttttataagagcaaactatataaaaacaaaaggcttcaatggcca
aaatgttaagaacaagttaagaatattttaaggctttgtggactcaaaaa
caccctatttcttaggtaaatggtcaaaaatattcacaaaatggtcaaaa
tatgaacatgttaagagcatttttaggcttaaaacgcaaaaagtttagaa
catccgaaggcttcaaacattttggatgctcttataaaaagacgtgtatg
AAACGATATTTTTGTGAATGAAGGAAAAGTAAACACATGACGTTATGCTA
CCTTTTCTGTAAGGCAAATAACACAATCCTTTAACATGTAAACATGaaat
aacaaacaaataaataacCCCTGGGTTTCGTCACTTACGACTACATATAT
AGGACTGAAAAATGTACATAcgcgtttttttatttataagaagaTCCAAC
ATTTTTGATGCCTTCggttgttcttaacattttaagttttaatttCTCCC
ATTCTgtgggtatttttgtccatttactgtagagtccccaaagccttaaa
atgttcttaacttgttcttagcattttggccatcgaagcctaatgtatgt
tcttttataattttttcttataaaaacgtgtagggCTGCAAATGTACACA
AATGTCTTAAGAGGTATATCGAATGAGTTCTTTGGTATTTTGATTTTCTA
GGAAGTAAAATAATCCGTATCCAGAAAAGTATTTTTCCTGTTTTCTGTAA
ACCTTTCGAAAAACCTCACACTTTAACGGGATTCTCATTCCtcttatatt
ttacaaaacccCACCTCTTTTTCATAAAGAGTGGAAAGCCAGATGTACCA
ATctgttatttcaattttgaattttctgtaTCTTTTTGTGCCACTAGCTT
ATTCTTGATTGTGTAATAAACCAAGAATATTCTTGAATAAACCCTCCACC
TTGACTTGTTTCTCCTTTTTTACGTGCAAAGTATTAGGTATGGGCACTTT
TTCTATCCCCCTTAATGCATTTCAACTTTTAATCTTCTCCTGTAAAGCGG
TAAAGATGAAAGAGAAACAAACTACTCCTCTAAATGGAAGAacaatattt
ctttattttttcaatcttatcatttttgaaatgttcttcACATCTATTTT
TCACATCTATTCCTCCCCTCTTAACATACGTTCTTCTATGGTCCACGTGT
TTCCCAATGAATAAAATTGTTTTCTCTGGTTTctcaaatctttcaaaaca
tatGTTAAAAACATTACAGAAACATTTATATTATAAGTCGCCTATGTAAT
GTTTGGCCTCATTGATCCAACTTTTAGTTTCGATCTTTGTCTCGATTCCC
TGATTGGTTTTAAACCAGCCATAAAGTTTTGGAAGAATTTCTAATGTCTT
TTCCTTACTGAGTTTCACTGTGTCACTTTTACTATATTAAAGAAATGGAG
CATAATCGGTTTTCCTTTTTCTAAGCATCGATTCCTAATGAAATTGTTCC
TATAAATACGAGGTCGTATCAAAGTTACTCACGAGTTACAAGAagaaaat
cttattttaaaTCAAGGAAGACCACCTGTTTCGAATTTGACATCCAGAAA
TTCATACAAACTTTTTAGGGAAAGATTTATTGaccaaaaacctttttttt
taaggTTGTTACGATATATGTATCGTTCTTCGAGATAAGGCTCTCATAAT
tgggaaacttttttgatatttttctagaATGAAATCTCAAAATCTCTTTT
GTGGCGAGCTTCAAAGAAGGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037143XLOC_037143Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058971-exon-scaffold_315-1491911889:336061..336168TCONS_00058971-exon-scaffold_315-1491911889:336061..336168Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:336061..336168TCONS_00058971-exon-scaffold_315-1510915933:336061..336168Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:336061..336168TCONS_00058971-exon-scaffold_315-1575043694:336061..336168Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:336300..336365TCONS_00058971-exon-scaffold_315-1491911889:336300..336365Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:336300..336365TCONS_00058971-exon-scaffold_315-1510915933:336300..336365Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:336300..336365TCONS_00058971-exon-scaffold_315-1575043694:336300..336365Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:336724..336816TCONS_00058971-exon-scaffold_315-1491911889:336724..336816Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:336724..336816TCONS_00058971-exon-scaffold_315-1510915933:336724..336816Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:336724..336816TCONS_00058971-exon-scaffold_315-1575043694:336724..336816Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:336949..337065TCONS_00058971-exon-scaffold_315-1491911889:336949..337065Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:336949..337065TCONS_00058971-exon-scaffold_315-1510915933:336949..337065Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:336949..337065TCONS_00058971-exon-scaffold_315-1575043694:336949..337065Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:337457..337481TCONS_00058971-exon-scaffold_315-1491911889:337457..337481Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:337457..337481TCONS_00058971-exon-scaffold_315-1510915933:337457..337481Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:337457..337481TCONS_00058971-exon-scaffold_315-1575043694:337457..337481Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:338336..338392TCONS_00058971-exon-scaffold_315-1491911889:338336..338392Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:338336..338392TCONS_00058971-exon-scaffold_315-1510915933:338336..338392Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:338336..338392TCONS_00058971-exon-scaffold_315-1575043694:338336..338392Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:338781..338888TCONS_00058971-exon-scaffold_315-1491911889:338781..338888Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:338781..338888TCONS_00058971-exon-scaffold_315-1510915933:338781..338888Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:338781..338888TCONS_00058971-exon-scaffold_315-1575043694:338781..338888Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:339094..339168TCONS_00058971-exon-scaffold_315-1491911889:339094..339168Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:339094..339168TCONS_00058971-exon-scaffold_315-1510915933:339094..339168Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:339094..339168TCONS_00058971-exon-scaffold_315-1575043694:339094..339168Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:341260..341369TCONS_00058971-exon-scaffold_315-1491911889:341260..341369Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:341260..341369TCONS_00058971-exon-scaffold_315-1510915933:341260..341369Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:341260..341369TCONS_00058971-exon-scaffold_315-1575043694:341260..341369Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1491911889:347188..347234TCONS_00058971-exon-scaffold_315-1491911889:347188..347234Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1510915933:347188..347234TCONS_00058971-exon-scaffold_315-1510915933:347188..347234Clytia hemisphaericaexon
TCONS_00058971-exon-scaffold_315-1575043694:347188..347234TCONS_00058971-exon-scaffold_315-1575043694:347188..347234Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:336061..347234 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
26.9364	25.5641	22.8203	21.8982	17.2615	14.3763	17.0104	17.4352	14.0712	14.7155	11.9218	7.28955	8.4081	8.60544	8.61978	9.91394	13.9909	11.5182	4.19631	5.42549	8.01337	7.82947	19.2462	15.968	18.7218	17.5651	9.35632	9.96275	11.9505	11.7718
Blast
[Close]
BLAST of TCONS_00058971 vs. Swiss-Prot (Human)
Match: UBP14 (Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo sapiens GN=USP14 PE=1 SV=3)

HSP 1 Score: 256.914 bits (655), Expect = 1.890e-81
Identity = 123/212 (58.02%), Postives = 162/212 (76.42%), Query Frame = 1 
Query:   76 DVKYLHTGLRNRLKENITKASPSLGRDASYTKSSLIDRLPAYLTVQFVRFYYKEKENVNAKVLKDVKFPMTLDVFDLCSSDLQNKLQPMRDRFKAEDEKNVLKKVEAAKAGGKPMEVDEKKKEIPYSFTEDVGSNNSGYYELKAVLTHKGRSSTSGHYVGWVRIGGDKWVKCDDDTVSPILEADVLKLSGGGDWHCAYVLLYGPKVLKVDEE 711
            +VKYL TGL+ RL+E ITK SP+L R+A Y KSS I RLPAYLT+Q VRF+YKEKE+VNAKVLKDVKFP+ LD+++LC+ +LQ K+   R +FK  ++K V ++   +     P +  E K E P+SF +D+GSNN GYY+L+AVLTH+GRSS+SGHYV WV+   D+W+K DDD VS +   D+L+LSGGGDWH AYVLLYGP+ +++ EE
Sbjct:  282 EVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQK--EVKYE-PFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVEIMEE 490
The following BLAST results are available for this feature:
BLAST of TCONS_00058971 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP141.890e-8158.02Ubiquitin carboxyl-terminal hydrolase 14 OS=Homo s... [more]
back to top