TCONS_00058977 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058977
Unique NameTCONS_00058977
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1125

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058977 ID=TCONS_00058977|Name=TCONS_00058977|organism=Clytia hemisphaerica|type=transcript|length=1125bp
GGGTTatcttttttaattaaaagGGGTTTGATAAAGCAATAAATGTAGTA
TTGCATTATTGGCTTTAAGGATTGCATAGAAGGAAAATGGACTGGCTTTT
TTGGATACAACTGCTTTtaactttgtttattttatattttttactcaACT
TTATTGTGGATCAATGGATTTCAACCaaagttagaaaaaatattttagtg
acAGGCTGTGATTCAGGTTTTGGTTTACAAACAGCTTTGGAATTAAGTGA
ATCAAATTGTCTTGTTTTTGCAAGTTGTCTAACTCAAGATGGCGTGGACA
TGCTTCAAAATGACGCGAGGTTTCAAGGGATGGCTTTTATCATGGATGTG
ACTAAAGAGGATGATGTTCAAAAAGCAAAGAAGATTATTGAACAGAATGG
AGGCATGCAAACGTTATTTGATTAATAATTTTCGTCTGAATCAAGTGGAA
TTATTCTTTGAGATTTTCTAGCAGATTCAATTACATAAATATCTAGTCCC
AacgttaaagaaaaattgctttaGACTTTGCATTTGGTTACAATTTATTG
GTTATCGGTAATTTGTTAAAAAGATTTAGACACTCAAAATTTTCGTAGTA
AATTATAATTTGTCGTCGAAATCTTATTCATTCAATCAGGTTTACATGGC
TTGGTTAACAACGCAGGGATTGTATTCCCAGGTTTAATCGAATGGCAATC
TATCGAGTTcatgaagaaaatatttgaagtgAATTTCTGGGGAATGGTTC
GTGTGACCAAGGTTATGTTACCATTATTGAAAAAGTCACGTGGTCGAATT
GTTAATGTGACAAGTATGGGTGGGAGACTGTCTCCACCATACACGGCATC
TTACTAGGCATCCAAATATGCAGCCGAAGCATTCTCAGACAGCTTGCGTC
TTGAAGTCAAACCATGTGGTATCAGTGTGCAAATTATCGAACCCACTATG
TATAAGACTGGCTTTGTAACGGCTGAAAGGATTATTCTTGAATGGACTTT
GTTATGGAAAGAACAGCTACAACATATCCGTGATAAGATTGGACAAATCC
AATTTGAAACTTGTGAGTTTTACTTctgattttaagtttttagtTAGAAT
AGCGAAGCCCTCCACATCAAAATAG
Run BLAST on NCBI

protein sequence of TCONS_00058977-protein

>TCONS_00058977-protein ID=TCONS_00058977-protein|Name=TCONS_00058977-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
MDWLFWIQLLLTLFILYFLLNFIVDQWISTKVRKNILVTGCDSGFGLQTA
LELSESNCLVFASCLTQDGVDMLQNDARFQGMAFIMDVTKEDDVQKAKKI
IEQNGGMQTLFD
Run BLAST on NCBI

transcript from alignment at scaffold_315:381356..382787+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058977 ID=TCONS_00058977|Name=TCONS_00058977|organism=Clytia hemisphaerica|type=transcript|length=1432bp|location=Sequence derived from alignment at scaffold_315:381356..382787+ (Clytia hemisphaerica)
GGGTTatcttttttaattaaaagGGGTTTGATAAAGCAATAAATGTAGTA
TTGCATTATTGGCTTTAAGGATTGCATAGAAGGAAAATGGACTGGCTTTT
TTGGATACAACTGCTTTtaactttgtttattttatattttttactcaACT
TTATTGTGGATCAATGGATTTCAACCaaagttagaaaaaatattttagtg
acAGGCTGTGATTCAGGTTTTGGTTTACAAACAGCTTTGGAATTAAGTGA
ATCAAATTGTCTTGTTTTTGCAAGTTGTCTAACTCAAGATGGCGTGGACA
TGCTTCAAAATGACGCGAGGTTTCAAGGGATGGCTTTTATCATGGATGTG
ACTAAAGAGGATGATGTTCAAAAAGCAAAGAAGATTATTGAACAGAATGG
AGGCATGCAAACGTTATTTGATTAATAATTTTCGTCTGAATCAAGTGGAA
TTATTCTTTGAGATTTTCTAGCAGATTCAATTACATAAATATCTAGTCCC
AacgttaaagaaaaattgctttaGACTTTGCATTTGGTTACAATTTATTG
GTTATCGGTAATTTGTTAAAAAGATTTAGACACTCAAAATTTTCGTAGTA
AATTATAATTTGTCGTCGAAATCTTATTCATTCAATCAGGTTTACATGGC
TTGGTTAACAACGCAGGGATTGTATTCCCAGGTTTAATCGAATGGCAATC
TATCGAGTTcatgaagaaaatatttgaagtgAATTTCTGGGGAATGGTTC
GTGTGACCAAGGTTATGTTACCATTATTGAAAAAGTCACGTGGTCGAATT
GTTAATGTGACAAGTATGGGTGGTAAGCTCAAATATTTTTCCCAACTTCC
CAACTACCAACTAATAAACGAATGAATAGAAAAcaatcgatttttttttt
ctgccgAGTCTCCATAAGTCAGGCCTTCATCATTCAATTGTTTTCATAAT
GTTTTTTGATCCCTTGAGAGGATCAGGCCTCTGGTCTCACCTTACAGCTC
AAGTTTATGGAGATCTAAATAAAAAAGCTTATATCCAATTCCAGGAGCTC
TTGGTTTGGTTTTGGTAAAAAAGTACGTATGAGATCAATTAAATGAACTA
CACTGTTTTCTTTCAACCTTTCAAAACAGGGAGACTGTCTCCACCATACA
CGGCATCTTACTAGGCATCCAAATATGCAGCCGAAGCATTCTCAGACAGC
TTGCGTCTTGAAGTCAAACCATGTGGTATCAGTGTGCAAATTATCGAACC
CACTATGTATAAGACTGGCTTTGTAACGGCTGAAAGGATTATTCTTGAAT
GGACTTTGTTATGGAAAGAACAGCTACAACATATCCGTGATAAGATTGGA
CAAATCCAATTTGAAACTTGTGAGTTTTACTTctgattttaagtttttag
tTAGAATAGCGAAGCCCTCCACATCAAAATAG

Coding sequence (CDS) from alignment at scaffold_315:381356..382787+

>TCONS_00058977 ID=TCONS_00058977|Name=TCONS_00058977|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_315:381356..382787+ (Clytia hemisphaerica)
ATGGACTGGCTTTTTTGGATACAACTGCTTTtaactttgtttattttata
ttttttactcaACTTTATTGTGGATCAATGGATTTCAACCaaagttagaa
aaaatattttagtgacAGGCTGTGATTCAGGTTTTGGTTTACAAACAGCT
TTGGAATTAAGTGAATCAAATTGTCTTGTTTTTGCAAGTTGTCTAACTCA
AGATGGCGTGGACATGCTTCAAAATGACGCGAGGTTTCAAGGGATGGCTT
TTATCATGGATGTGACTAAAGAGGATGATGTTCAAAAAGCAAAGAAGATT
ATTGAACAGAATGGAGGCATGCAAACGTTATTTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037147XLOC_037147Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058977-proteinTCONS_00058977-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058977-exon-scaffold_315-1491911889:381356..382177TCONS_00058977-exon-scaffold_315-1491911889:381356..382177Clytia hemisphaericaexon
TCONS_00058977-exon-scaffold_315-1510915933:381356..382177TCONS_00058977-exon-scaffold_315-1510915933:381356..382177Clytia hemisphaericaexon
TCONS_00058977-exon-scaffold_315-1575043694:381356..382177TCONS_00058977-exon-scaffold_315-1575043694:381356..382177Clytia hemisphaericaexon
TCONS_00058977-exon-scaffold_315-1491911889:382485..382787TCONS_00058977-exon-scaffold_315-1491911889:382485..382787Clytia hemisphaericaexon
TCONS_00058977-exon-scaffold_315-1510915933:382485..382787TCONS_00058977-exon-scaffold_315-1510915933:382485..382787Clytia hemisphaericaexon
TCONS_00058977-exon-scaffold_315-1575043694:382485..382787TCONS_00058977-exon-scaffold_315-1575043694:382485..382787Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:381356..382787 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.037769	0	0	0.0522311	0.0412737	0.448155	0.233087	0.234861	0.16171	0.941757	0	0.261727	0.464862	0	0	0	0.0298013	0.0411721	0	0.0374475	0.109593	0	0	0.291088	0.148451	0	0	0	0.0437985
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
[Close]
BLAST of TCONS_00058977 vs. Swiss-Prot (Human)
Match: BDH (D-beta-hydroxybutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=BDH1 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.977e-24
Identity = 58/144 (40.28%), Postives = 91/144 (63.19%), Query Frame = 3 
Query:  633 QSGLHGLVNNAGIVFPGLIEWQSIEFMKKIFEVNFWGMVRVTKVMLPLLKKSRGRIVNVTSMGGRLSPPXXXXXXXXXXXXXXXXDSLRLEVKPCGISVQIIEPTMY--KTGFVTAERIILEWTLLWKEQLQHIRDKIGQIQFE 1058
            + G+ GLVNNAGI   G +E+ S+E  K++ EVN WG VR+TK  LPL+++++GR+VN++SM GR++ P  + Y  +K+  EAFSD LR E+ P G+ V ++EP  +   T   + E I      +W+E  + +R   G+  F+
Sbjct:  135 EKGMWGLVNNAGISTFGEVEFTSLETYKQVAEVNLWGTVRMTKSFLPLIRRAKGRVVNISSMLGRMANPARSPYCITKFGVEAFSDCLRYEMYPLGVKVSVVEPGNFIAATSLYSPESIQAIAKKMWEELPEVVRKDYGKKYFD 278
The following BLAST results are available for this feature:
BLAST of TCONS_00058977 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BDH4.977e-2440.28D-beta-hydroxybutyrate dehydrogenase, mitochondria... [more]
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