TCONS_00058979 (transcript) - C. hemisphaerica

Overview
NameTCONS_00058979
Unique NameTCONS_00058979
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length696

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00058979 ID=TCONS_00058979|Name=TCONS_00058979|organism=Clytia hemisphaerica|type=transcript|length=696bp
AACATATCCGTGATGAAATTGGACAAATCCAATTTGAAACTTGTGAGTTT
TACTTctgattttaagtttttagtTAGAATAGCGAAGCCCTCCACATCAA
AAAAGCCCAGAGATCTTGACTCGTTTCAGAGTCGGCTATAACTGGCGGCC
ATCGAATTTTTTACAGTTAAAACTATGATAgacaagatttttgaaacttt
tcaggGACTTTAAGTAAACATTCTAAAGACGTGAGTATCACATTCGAGGA
GACATTCGAGCTATAGGGGTTCAAGTTAATGAGGCGCTACTGCATTATTA
TACAACAACAACTGactaaactttcaatttttattctggtctgtaaaata
ctagCCATGCATGTGGCCGAATCAAAATTTGCAAATCATctataaaattt
cgaaaattgaaaagcAATACAAAAGAAATCGTGTGTATCGTGTTAtgctt
ttttttttagttttgtcaaAAATGATGACTTTAGTTGGTTCGAAAGCCAC
TGAGAACGTTAGCGAGGTATCGAAACTCATTAAACATGCTTTGTTAGCCA
GGTTACCAAAGCGACGTTACGTCACAGGTATTGAATGTAATATTTCTATT
GTCTTATCTCACCTTCCAACCATAATCCTTGATTGGATGTTCATGGCAAA
TATGCCCATTCTTCGACCAATGATATTATCGAAAAAGGAACAGTAA
Run BLAST on NCBI

transcript from alignment at scaffold_315:384688..385383+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00058979 ID=TCONS_00058979|Name=TCONS_00058979|organism=Clytia hemisphaerica|type=transcript|length=696bp|location=Sequence derived from alignment at scaffold_315:384688..385383+ (Clytia hemisphaerica)
AACATATCCGTGATGAAATTGGACAAATCCAATTTGAAACTTGTGAGTTT
TACTTctgattttaagtttttagtTAGAATAGCGAAGCCCTCCACATCAA
AAAAGCCCAGAGATCTTGACTCGTTTCAGAGTCGGCTATAACTGGCGGCC
ATCGAATTTTTTACAGTTAAAACTATGATAgacaagatttttgaaacttt
tcaggGACTTTAAGTAAACATTCTAAAGACGTGAGTATCACATTCGAGGA
GACATTCGAGCTATAGGGGTTCAAGTTAATGAGGCGCTACTGCATTATTA
TACAACAACAACTGactaaactttcaatttttattctggtctgtaaaata
ctagCCATGCATGTGGCCGAATCAAAATTTGCAAATCATctataaaattt
cgaaaattgaaaagcAATACAAAAGAAATCGTGTGTATCGTGTTAtgctt
ttttttttagttttgtcaaAAATGATGACTTTAGTTGGTTCGAAAGCCAC
TGAGAACGTTAGCGAGGTATCGAAACTCATTAAACATGCTTTGTTAGCCA
GGTTACCAAAGCGACGTTACGTCACAGGTATTGAATGTAATATTTCTATT
GTCTTATCTCACCTTCCAACCATAATCCTTGATTGGATGTTCATGGCAAA
TATGCCCATTCTTCGACCAATGATATTATCGAAAAAGGAACAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037148XLOC_037148Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00058979-exon-scaffold_315-1491911889:384688..385383TCONS_00058979-exon-scaffold_315-1491911889:384688..385383Clytia hemisphaericaexon
TCONS_00058979-exon-scaffold_315-1510915933:384688..385383TCONS_00058979-exon-scaffold_315-1510915933:384688..385383Clytia hemisphaericaexon
TCONS_00058979-exon-scaffold_315-1575043694:384688..385383TCONS_00058979-exon-scaffold_315-1575043694:384688..385383Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_315supercontigscaffold_315:384688..385383 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.187319	0.214723	0.184167	0	1.11824	0	0	0.183448	0	0.133177	0.109376	0	0	0.119729	0	0	0	0	0	0	0	0	0	0.247143
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00058979 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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