TCONS_00059094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059094
Unique NameTCONS_00059094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059094 ID=TCONS_00059094|Name=TCONS_00059094|organism=Clytia hemisphaerica|type=transcript|length=415bp
ACCCTCTTACATTACAACGTACACTAATCTTacaaaagtaaaatttacaa
tacaatacaatcacgtttttttttttctcgaagaTGCTCGGGAAGTCCAC
CCAATCGATTTATACAAAACTCGATATCTCGATCAATATCGACTTCAACC
CCATTTAATTTCAATGTTTCAgcattcattttcttttgaagtttttttac
gATAAAAAGAATAGTCAAAGCTTGTTCATGTTCTTGACgtaatttcaaat
gttttgcCATGAATAATGCCTCTCTTAAATCATTTGGATGACATTGTCTC
TTTAGTTTTTTGAAGagttttttcgaatgttttgaggcTTCTTTGTAATC
ATTTTCACGAATGAAACAACAAATATAAAGTATTCTGCATCGGAATTTCA
CTCTCGTTAGATTAC
Run BLAST on NCBI

protein sequence of TCONS_00059094-protein

>TCONS_00059094-protein ID=TCONS_00059094-protein|Name=TCONS_00059094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
NLTRVKFRCRILYICCFIRENDYKEASKHSKKLFKKLKRQCHPNDLREAL
FMAKHLKLRQEHEQALTILFIVKKLQKKMNAETLKLNGVEVDIDRDIEFC
INRLGGLPEHLREKKKRDCIVL
Run BLAST on NCBI

transcript from alignment at scaffold_316:74110..74524

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059094 ID=TCONS_00059094|Name=TCONS_00059094|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at scaffold_316:74110..74524 (Clytia hemisphaerica)
GTAATCTAACGAGAGTGAAATTCCGATGCAGAATACTTTATATTTGTTGT
TTCATTCGTGAAAATGATTACAAAGAAgcctcaaaacattcgaaaaaact
CTTCAAAAAACTAAAGAGACAATGTCATCCAAATGATTTAAGAGAGGCAT
TATTCATGgcaaaacatttgaaattacGTCAAGAACATGAACAAGCTTTG
ACTATTCTTTTTATcgtaaaaaaacttcaaaagaaaatgaatgcTGAAAC
ATTGAAATTAAATGGGGTTGAAGTCGATATTGATCGAGATATCGAGTTTT
GTATAAATCGATTGGGTGGACTTCCCGAGCAtcttcgagaaaaaaaaaaa
cgtgattgtattgtattgtaaattttacttttgtAAGATTAGTGTACGTT
GTAATGTAAGAGGGT

Coding sequence (CDS) from alignment at scaffold_316:74110..74524

>TCONS_00059094 ID=TCONS_00059094|Name=TCONS_00059094|organism=Clytia hemisphaerica|type=CDS|length=369bp|location=Sequence derived from alignment at scaffold_316:74110..74524 (Clytia hemisphaerica)
AATCTAACGAGAGTGAAATTCCGATGCAGAATACTTTATATTTGTTGTTT
CATTCGTGAAAATGATTACAAAGAAgcctcaaaacattcgaaaaaactCT
TCAAAAAACTAAAGAGACAATGTCATCCAAATGATTTAAGAGAGGCATTA
TTCATGgcaaaacatttgaaattacGTCAAGAACATGAACAAGCTTTGAC
TATTCTTTTTATcgtaaaaaaacttcaaaagaaaatgaatgcTGAAACAT
TGAAATTAAATGGGGTTGAAGTCGATATTGATCGAGATATCGAGTTTTGT
ATAAATCGATTGGGTGGACTTCCCGAGCAtcttcgagaaaaaaaaaaacg
tgattgtattgtattgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037213XLOC_037213Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059094-proteinTCONS_00059094-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059094-exon-scaffold_316-1491911889:74110..74524TCONS_00059094-exon-scaffold_316-1491911889:74110..74524Clytia hemisphaericaexon
TCONS_00059094-exon-scaffold_316-1510915933:74110..74524TCONS_00059094-exon-scaffold_316-1510915933:74110..74524Clytia hemisphaericaexon
TCONS_00059094-exon-scaffold_316-1575043694:74110..74524TCONS_00059094-exon-scaffold_316-1575043694:74110..74524Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_316supercontigscaffold_316:74110..74524 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.213829	0	0.882317	1.40584	0.419912	0.367056	1.15647	1.70557	0.761108	0.612097	2.43444	0.470254	2.31085	1.39588	0.504522	2.023	0.189984	1.93614	6.20874	4.6236	4.22981	2.23408	3.0019	2.25195	0	0.866207	9.58423	6.60609	3.38577	1.41608
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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