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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059069 ID=TCONS_00059069|Name=TCONS_00059069|organism=Clytia hemisphaerica|type=transcript|length=1151bp
AAGAATCAGTTTATCTTATCAATTTCGAATCATCAATTCGCCTATAAAAG
GAGGTGGACTCAATTTAGAAATTAAAACtcaattcaaaatgaagatacAA
CTTAGCTTATTAGCAATTGTTTGCTTAGTGTTTCCAACACTATCACATTC
GTATCAAATCAATGATGTCCAAGATGATTCTCTCTACGATCTAGTATCAT
TGCAACCGAAATCATCCGAATCACAAAGTGATGAAAAAAACCGACATGTC
GCCGACATGATTGGTGATGATGACGTTAATAACAAAGAGAATGACAACAG
TTATGTTTTTGATCCTAATGGTGATGCGATTGGTGAAAATAATGAGATCA
ACCAAGATGTAGAGGATACAAAGTCGGTTGAAGATGGTGATGGTGACTTT
GAGGATGAACAATTGAATGATAACatggatgaaaatgaagataGTGAAGA
CGACGACGATGATGAGATTCTCAATGATTTCAACGCTAACGAAGAAAATG
ACAATAGCAATGATGGAggagaagaagatgaagatgaaaacgaGGAAGCA
GACACACGAGAACTTGCTGAGAATGCAGCTGATGAAGAACTTATCCAAGA
TCCAGAAGTGCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCGACGTG
CTATACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGTCGGG
AGACGTCGCTTTATACGTCGTGTAGGCAGGACAAGACTCATACGTCGAGT
AACACGACGACGATTTTTACGCCGTATCACACGACGTGTAATCCGTCATG
TAACACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCTACAAA
ATGTGCTTGGCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGTTTAAT
CAAGAAAGGATGTCGATGTGGCGTATTTGGATtgattggaaaataaaaaa
cttataACAGACCATGTTCGCATGtaggttccgtttcgctccgaaacgaa
atgaagtcATTCCATTCTAATTCATTCTAACTTTTGAAAACACACTCCTA
GGGATCTATAATTTTAGCTAAACTTCTCAGATTCTCGAATTAACCTATTA
AGTGCAAACACTCAGGAACATCGAACAGCACGGCATGAGCCGTGACGATC
C Run BLAST on NCBI protein sequence of TCONS_00059069-protein >TCONS_00059069-protein ID=TCONS_00059069-protein|Name=TCONS_00059069-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
RISLSYQFRIINSPIKGGGLNLEIKTQFKMKIQLSLLAIVCLVFPTLSHS
YQINDVQDDSLYDLVSLQPKSSESQSDEKNRHVADMIGDDDVNNKENDNS
YVFDPNGDAIGENNEINQDVEDTKSVEDGDGDFEDEQLNDNMDENEDSED
DDDDEILNDFNANEENDNSNDGGEEDEDENEEADTRELAENAADEELIQD
PEVRSMMKEDPLFFRRAIRRIGRRVVRVVRRVGRRRFIRRVGRTRLIRRV
TRRRFLRRITRRVIRHVTRRRFLVCRGKCFAYKMCLAKTKGIGYLMCRLI
KKGCRCGVFGLIGK Run BLAST on NCBI transcript from alignment at scaffold_316:91411..94623- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059069 ID=TCONS_00059069|Name=TCONS_00059069|organism=Clytia hemisphaerica|type=transcript|length=3213bp|location=Sequence derived from alignment at scaffold_316:91411..94623- (Clytia hemisphaerica)
AAGAATCAGTTTATCTTATCAATTTCGAATCATCAATTCGCCTATAAAAG
GAGGTGGACTCAATTTAGAAATTAAAACTCAATTCAAAATGAAGATACAA
CTTAGCTTATTAGCAATTGTTTGCTTAGTGTTTCCAACACTATCACATTG
TAAGTATGCTTTCATATTTCGCTTTCTTGACCCAACCTTTGTAGCATTTT
ATTTTTCGTATCCATGTGTATTAAACTGTTGAAATTAAATCTACGACATA
GTTCAACTACTGTTTCCAGATCACCCAAATAAAGACATATACGCATGCGT
AAATTCTTGTTCTTTTAACCAGCGTCATTTAGCGTAATATAGCAAAAAGG
AGTGAATAAGTAGGGGTAGTGGCCCTCATAAGGTCGGGGTTGGGTGATAA
AATGTGCCGTGCTCTTTCGTTCTTTTTATCATTTGTTGTTCTTGTTAGAG
GGTCTGGAAAGGCTGTTGAACAGTCTCCGTCCTCCCTACCAGGGAAAGTT
TTTTTTTCGAGTTACCCCACTAAAAAATTTTTTTTTTGATCAGTTTTTGT
TTCAGTAGTAAGGTACTTTTTAAGATCATTAATATATTTTGAAAATGCAG
ATTCAATCATAGTTGTCAATATAAAAAACTGGTAGTCAATTGTTATAACT
TTTTCCTAGTGAAAGCAATGCTTCAAAATCGATTTGCTCAGTTTTTGATC
ACCCTACCCAATAATTTTGTTTGGATTTGTTCAAAAATTAATAACATGAC
CAAAATTTGAGGAAAATAAACCATTTTATGATTGGTAAGTTTAAGGTGTT
AACAAAAGGAAGAAACAAGAGGCTTCCATACAAATTTTGATTTTTTTAAG
CAAGTCTGCCATCATAAAACATAAAATGAAATCCCCTAATTACCCAGATT
TCAGGATTTCAGTATTCTGACCGAAATACAGAATAGATTCTGAAATCTCG
TAGACCTCCACTTTTATGTGGACTATGATTGAATCTAGTCGAAGAGTTAT
TATTTGCTTCCCTACACGAAATATTCATTCTAAATTTCTAATTACTTAAC
AGCGTATCAAATCAATGATGTCCAAGATGATTCTCTCTACGATCTAGTAT
CATTGCAACCGAAATCATCCGAATCACAAAGTGATGAAAAAAACCGACAT
GTCGCCGACATGATTGGTGATGATGACGTTAATAACAAAGAGAATGACAA
CAGTTATGTTTTTGATCCTAATGGTGATGCGATTGGTGAAAATAATGAGA
TCAACCAAGATGTAGAGGATACAAAGTCGGTTGAAGATGGTGATGGTGAC
TTTGAGGATGAACAATTGAATGATAACATGGATGAAAATGAAGATAGTGA
AGACGACGACGATGATGAGATTCTCAATGGTAAATAAATCTTTCATATCA
TTTTCAAAGGTTTTGTTTTTAAATAAGAGTGATATCGTTTGCTTACTCAT
CAATTTCGGATTGACACGAATGTGGAGCGAGATTGGTCAGAAGGAGAAAA
AGAAAAACATTTTTTGCTTATATCAGCATAATATAACAATAGACACTGTC
CTGATATGAAACAGAACACTTATGTAAAAATAAAACCTTTAAGTTAACCT
TTAATTTGATTGATCGACCGCCGGGGGCGGTTTCTTTCATAGTGGTACGC
TAATATCGTTTTGCCTTGGCTCATTACTTTGTCTGACATTTACTTTCGGT
TTTTTTAACTAGATTACCCAGGTGTTTCTCTTTTTTTTTCCTTGAATGTC
TTTTATTCGGAATTGAATAATCGAGACATGAAAAATGACTATATTGTAAT
CTGTTTTCAATGAATAATCTAAAATGTACTGGAGATGANGGCGTTAATAA
TGTGCACGCGCTCTTTCGCGAGCGTGATGCGTGATGGAAGGCGGTCGTTT
CAGTGTGGTTTAGATTCACACTGTGACCTAGTTTTAATATACATATATAT
TGAGTTTTCTGACATAAAAACAAAAGAAATGAAATCCCCAGCCATAAAAA
ACGTTGGAAAACCAATCCCCATCGAGAGATTCAGTCCATTATTTTTATCC
CCACTGGCTGAACAAATCCTGCCGGGTCTGTGGGAAGAGGTTGTGAAACG
GGAATACTTATGTAACAAATGACGGTATACACTCTTAATCTATAGATTTC
AACGCTAACGAAGAAAATGACAATAGCAATGATGGAGGAGAAGAAGATGA
AGATGAAAACGAGGAAGCAGACACACGAGAACTTGCTGAGAATGCAGCTG
ATGAAGAACTTATCCAAGGTTTGACTTTCGATTCGTGATATGCACCACTG
CAATGACTTCACGAAACTATGCAACTTTTCTGTTTTTGTTCCACCCAATA
CGTCACTTTTTCTATTGTTTAAATGACGTATTGGGTGGAAAATCTTAAAA
GTTCTCAGAAGAATCTCCAGTGGTGCATATCATGATTATTCATATATACC
CTAGGGGGGAGGGGTACTTAGGCAAAATGTGTGCCGAGTATGTGCAAGCC
ATAAGGCTCCCTTTTACACACCCTCGAAAGTCTCTCAAAGGAGTCTATAA
AAACCATAAAAGAAAATTGAGTCTCTGTTAAGGCCCACCCAATATCACGA
AATTTAAAATTTTTTCTCTCAAAGGACCGTAACTTTCAAATGAAAATCTT
TTCTCCTATAGATCCAGAAGTGCGTTCAATGATGAAAGAGGATCCCTTGT
TTTTTCGACGTGCTATACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTT
CGTCGTGTCGGGAGACGTCGCTTTATACGTCGTGTAGGCAGGACAAGACT
CATACGTCGAGTAACACGACGACGATTTTTACGCCGTATCACACGACGTG
TAATCCGTCATGTAACACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGC
TTTGCCTACAAAATGTGCTTGGCGAAAACGAAAGGGATTGGTTATTTGAT
GTGCCGTTTAATCAAGAAAGGATGTCGATGTGGCGTATTTGGATTGATTG
GAAAATAAAAAACTTATAACAGACCATGTTCGCATGTAGGTTCCGTTTCG
CTCCGAAACGAAATGAAGTCATTCCATTCTAATTCATTCTAACTTTTGAA
AACACACTCCTAGGGATCTATAATTTTAGCTAAACTTCTCAGATTCTCGA
ATTAACCTATTAAGTGCAAACACTCAGGAACATCGAACAGCACGGCATGA
GCCGTGACGATCC Coding sequence (CDS) from alignment at scaffold_316:91411..94623- >TCONS_00059069 ID=TCONS_00059069|Name=TCONS_00059069|organism=Clytia hemisphaerica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_316:91411..94623- (Clytia hemisphaerica)
ATCCAGAAGTGCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCGACGT
GCTATACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGTCGG
GAGACGTCGCTTTATACGTCGTGTAGGCAGGACAAGACTCATACGTCGAG
TAACACGACGACGATTTTTACGCCGTATCACACGACGTGTAATCCGTCAT
GTAACACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCTACAA
AATGTGCTTGGCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGTTTAA
TCAAGAAAGGATGTCGATGTGGCGTATTTGGATTGATTGGAAAATAAATT
TCAACGCTAACGAAGAAAATGACAATAGCAATGATGGAGGAGAAGAAGAT
GAAGATGAAAACGAGGAAGCAGACACACGAGAACTTGCTGAGAATGCAGC
TGATGAAGAACTTATCCAAGCGTATCAAATCAATGATGTCCAAGATGATT
CTCTCTACGATCTAGTATCATTGCAACCGAAATCATCCGAATCACAAAGT
GATGAAAAAAACCGACATGTCGCCGACATGATTGGTGATGATGACGTTAA
TAACAAAGAGAATGACAACAGTTATGTTTTTGATCCTAATGGTGATGCGA
TTGGTGAAAATAATGAGATCAACCAAGATGTAGAGGATACAAAGTCGGTT
GAAGATGGTGATGGTGACTTTGAGGATGAACAATTGAATGATAACATGGA
TGAAAATGAAGATAGTGAAGACGACGACGATGATGAGATTCTCAATGAGA
ATCAGTTTATCTTATCAATTTCGAATCATCAATTCGCCTATAAAAGGAGG
TGGACTCAATTTAGAAATTAAAACTCAATTCAAAATGAAGATACAACTTA
GCTTATTAGCAATTGTTTGCTTAGTGTTTCCAACACTATCACATTATCCA
GAAGTGCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCGACGTGCTAT
ACGACGTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGTCGGGAGAC
GTCGCTTTATACGTCGTGTAGGCAGGACAAGACTCATACGTCGAGTAACA
CGACGACGATTTTTACGCCGTATCACACGACGTGTAATCCGTCATGTAAC
ACGCCGCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCTACAAAATGT
GCTTGGCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGTTTAATCAAG
AAAGGATGTCGATGTGGCGTATTTGGATTGATTGGAAAATAAATTTCAAC
GCTAACGAAGAAAATGACAATAGCAATGATGGAGGAGAAGAAGATGAAGA
TGAAAACGAGGAAGCAGACACACGAGAACTTGCTGAGAATGCAGCTGATG
AAGAACTTATCCAAGCGTATCAAATCAATGATGTCCAAGATGATTCTCTC
TACGATCTAGTATCATTGCAACCGAAATCATCCGAATCACAAAGTGATGA
AAAAAACCGACATGTCGCCGACATGATTGGTGATGATGACGTTAATAACA
AAGAGAATGACAACAGTTATGTTTTTGATCCTAATGGTGATGCGATTGGT
GAAAATAATGAGATCAACCAAGATGTAGAGGATACAAAGTCGGTTGAAGA
TGGTGATGGTGACTTTGAGGATGAACAATTGAATGATAACATGGATGAAA
ATGAAGATAGTGAAGACGACGACGATGATGAGATTCTCAATGAGAATCAG
TTTATCTTATCAATTTCGAATCATCAATTCGCCTATAAAAGGAGGTGGAC
TCAATTTAGAAATTAAAACTCAATTCAAAATGAAGATACAACTTAGCTTA
TTAGCAATTGTTTGCTTAGTGTTTCCAACACTATCACATTATCCAGAAGT
GCGTTCAATGATGAAAGAGGATCCCTTGTTTTTTCGACGTGCTATACGAC
GTATCGGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGTCGGGAGACGTCGC
TTTATACGTCGTGTAGGCAGGACAAGACTCATACGTCGAGTAACACGACG
ACGATTTTTACGCCGTATCACACGACGTGTAATCCGTCATGTAACACGCC
GCCGTTTCTTGGTTTGTCGGGGAAAATGCTTTGCCTACAAAATGTGCTTG
GCGAAAACGAAAGGGATTGGTTATTTGATGTGCCGTTTAATCAAGAAAGG
ATGTCGATGTGGCGTATTTGGATTGATTGGAAAATAAATTTCAACGCTAA
CGAAGAAAATGACAATAGCAATGATGGAGGAGAAGAAGATGAAGATGAAA
ACGAGGAAGCAGACACACGAGAACTTGCTGAGAATGCAGCTGATGAAGAA
CTTATCCAAGCGTATCAAATCAATGATGTCCAAGATGATTCTCTCTACGA
TCTAGTATCATTGCAACCGAAATCATCCGAATCACAAAGTGATGAAAAAA
ACCGACATGTCGCCGACATGATTGGTGATGATGACGTTAATAACAAAGAG
AATGACAACAGTTATGTTTTTGATCCTAATGGTGATGCGATTGGTGAAAA
TAATGAGATCAACCAAGATGTAGAGGATACAAAGTCGGTTGAAGATGGTG
ATGGTGACTTTGAGGATGAACAATTGAATGATAACATGGATGAAAATGAA
GATAGTGAAGACGACGACGATGATGAGATTCTCAATGAGAATCAGTTTAT
CTTATCAATTTCGAATCATCAATTCGCCTATAAAAGGAGGTGGACTCAAT
TTAGAAATTAAAACTCAATTCAAAATGAAGATACAACTTAGCTTATTAGC
AATTGTTTGCTTAGTGTTTCCAACACTATCACATTATCCAGAAGTGCGTT
CAATGATGAAAGAGGATCCCTTGTTTTTTCGACGTGCTATACGACGTATC
GGCCGTCGTGTTGTTCGTGTCGTTCGTCGTGTCGGGAGACGTCGCTTTAT
ACGTCGTGTAGGCAGGACAAGACTCATACGTCGAGTAACACGACGACGAT
TTTTACGCCGTATCACACGACGTGTAATCCGTCATGTAACACGCCGCCGT
TTCTTGGTTTGTCGGGGAAAATGCTTTGCCTACAAAATGTGCTTGGCGAA
AACGAAAGGGATTGGTTATTTGATGTGCCGTTTAATCAAGAAAGGATGTC
GATGTGGCGTATTTGGATTGATTGGAAAATAAATTTCAACGCTAACGAAG
AAAATGACAATAGCAATGATGGAGGAGAAGAAGATGAAGATGAAAACGAG
GAAGCAGACACACGAGAACTTGCTGAGAATGCAGCTGATGAAGAACTTAT
CCAAGCGTATCAAATCAATGATGTCCAAGATGATTCTCTCTACGATCTAG
TATCATTGCAACCGAAATCATCCGAATCACAAAGTGATGAAAAAAACCGA
CATGTCGCCGACATGATTGGTGATGATGACGTTAATAACAAAGAGAATGA
CAACAGTTATGTTTTTGATCCTAATGGTGATGCGATTGGTGAAAATAATG
AGATCAACCAAGATGTAGAGGATACAAAGTCGGTTGAAGATGGTGATGGT
GACTTTGAGGATGAACAATTGAATGATAACATGGATGAAAATGAAGATAG
TGAAGACGACGACGATGATGAGATTCTCAATGAGAATCAGTTTATCTTAT
CAATTTCGAATCATCAATTCGCCTATAAAAGGAGGTGGACTCAATTTAGA
AATTAAAACTCAATTCAAAATGAAGATACAACTTAGCTTATTAGCAATTG
TTTGCTTAGTGTTTCCAACACTATCACATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059069-exon-scaffold_316-1575043694:94475..94623 | TCONS_00059069-exon-scaffold_316-1575043694:94475..94623 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1575043694:93245..93571 | TCONS_00059069-exon-scaffold_316-1575043694:93245..93571 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1575043694:92356..92478 | TCONS_00059069-exon-scaffold_316-1575043694:92356..92478 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1575043694:91411..91962 | TCONS_00059069-exon-scaffold_316-1575043694:91411..91962 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1510915933:94475..94623 | TCONS_00059069-exon-scaffold_316-1510915933:94475..94623 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1510915933:93245..93571 | TCONS_00059069-exon-scaffold_316-1510915933:93245..93571 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1510915933:92356..92478 | TCONS_00059069-exon-scaffold_316-1510915933:92356..92478 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1510915933:91411..91962 | TCONS_00059069-exon-scaffold_316-1510915933:91411..91962 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1491911889:94475..94623 | TCONS_00059069-exon-scaffold_316-1491911889:94475..94623 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1491911889:93245..93571 | TCONS_00059069-exon-scaffold_316-1491911889:93245..93571 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1491911889:92356..92478 | TCONS_00059069-exon-scaffold_316-1491911889:92356..92478 | Clytia hemisphaerica | exon |
| TCONS_00059069-exon-scaffold_316-1491911889:91411..91962 | TCONS_00059069-exon-scaffold_316-1491911889:91411..91962 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:91411..94623 - |
Blast
The following BLAST results are available for this feature:
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