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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059080 ID=TCONS_00059080|Name=TCONS_00059080|organism=Clytia hemisphaerica|type=transcript|length=1803bp
taacacTGAACCGCAGAACGTACGCGTTATACTTGCAGTAAACTATTTAG
AGTTCAAAAATATCCCTTTTGGTATATATTCTACATCATTTCAGATTTTC
ACCACCTATTGTTTACAATTGATGTCTAGAGAGACTGTTTAAACCAATCT
AATAGAAGTACGTGTTCAAGCCTGTCTGAAGGGtattatttttatcataa
gGTACTTTTTATTACTCTGTACGTGAACCGGATTGTTTTAAGTCAGGGAC
TTTTCCCTTGATTTTTCTAATGACACACCAATTGACATATTTACCAAAAG
CTAAGGGTTTCGAATTTCCAAAACACTTGATTACAgcaaaaaacaataaa
tgtCTGGTCACACTGTAATTCTTTGAACAACCATGTAACTACCTATTTTT
GTTTAGAATGTTAGTCCATAAAgagatgaaaattttccaagatCAATGTT
TGGATTTGAGGCCATAACTTATAAATAGTATCTTTGTATCCTTAGCGTCA
CACACTGCTAGAAATTCATCTGAGATACAGGTTGTTACAGTAACACTGGT
GGTTTAACAAAATGAAGATTCTTGCATTGACGTTATTAGTATTTTGTGCT
ATAATTCAGCTGAACCCAACAAGTGCTTGGTGGTCTAAGAGTGGCGGTGG
TGGTAGTGGAGCCACGCGCAGCCATGACATTAACTCACAAAGTGGTTTGA
CAAACCTTTACAACCAAAAGATCAAAACTATCGAACGAGTGTCAAGAAAA
ATGCCATATGTTCCAATCTTCAAGCATCAGGGTGTTCGAGTTACCCTTGA
CGATGGCAGTAAGTTTCTGGTCCATAAGGGTTCTGGCTATGGTGGCCGAG
GTGGACAAAATGTTGTCACTAATGCCCGTCATATGAGTAAGAAATGGTCT
GGCGCCGGTGCACGTAAGGTCAATAGTGGCGCCACACTTGGGGACTTGGT
AAAAGCTGGAGGAAAGAATTATAATGTTGCTGTGGATAATTGTTACCATG
GCGCTACAAGAATGGAAAAGAAGGCTGATGGAAACTAATTTAGGAGATGT
ATTTTTTGCATTCGGATTTTTCTAAATGATTTCCGTGAAAACCGTGAAAA
ATACTTATTACTATTCCTAAGATACTGTAATTTCGACGGGTAATCTTTAG
TTGGGACTATTTGcctttttattttgtaattttgagtatatttttcatgt
aattcttcttttttttttaatttagccCATTAtttgtaatagttatcgca
tgacttcgagtgaaATACGataaatattttacgagttctggactttttcc
gtaatattttccgaaaaatatCGGAAAAAGTACGGAACGAGTGCGATAAC
TCATTTATTGTCGaccccaaaaaaatttattgtttttcgatAAAGTTCAA
ATATCAAATTCTAAAAGCAGTCACATTTCTACTTTTTATCGATACAAagg
tcaaaacaaaaaaatttgaaaatgtttattcacaatatttcattactttt
tcatTATAAACCTTAAAATCTCTTATATCTCTTTtacatttagaaatttt
ttaagaatatcAATATTTTATGATTTAGTTATTCATGTGCaccaaatttc
gaaagaatTTAACCATGAATAAGTTTACCGCgagtttattttatttgaaa
ctcTGTAGGAATTATtaggaaattttaattcttaaGTTAAGTTTAAACTG
CGTCCATGTTAAGTTAATTAAAATGACCGTAAGGAAAATTGTCCAGAGAT
TCAAATATAtaagaatttaaagaaaataacgACGTTATGTAGAAAATCAG
AAT Run BLAST on NCBI transcript from alignment at scaffold_316:230588..234337- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059080 ID=TCONS_00059080|Name=TCONS_00059080|organism=Clytia hemisphaerica|type=transcript|length=3750bp|location=Sequence derived from alignment at scaffold_316:230588..234337- (Clytia hemisphaerica)
TAACACTGAACCGCAGAACGTACGCGTTATACTTGCAGTAAACTATTTAG
AGTTCAAAAATATCCCTTTTGGTATATATTCTACATCATTTCAGATTTTC
ACCACCTATTGTTTACAATTGATGTCTAGAGAGACTGTTTAAACCAATCT
AATAGAAGTACGTGTTCAAGCCTGTCTGAAGGGTATTATTTTTATCATAA
GGTACTTTTTATTACTCTGTACGTGAACCGGATTGTTTTAAGTCAGGGAC
TTTTCCCTTGATTTTTCTAATGACACACCAATTGACATATTTACCAAAAG
CTAAGGGTTTCGAATTTCCAAAACACTTGATTACAGCAAAAAACAATAAA
TGTCTGGTCACACTGTAATTCTTTGAACAACCATGTAACTACCTATTTTT
GTTTAGAATGTTAGTCCATAAAGAGATGAAAATTTTCCAAGATCAATGTT
TGGATTTGAGGCCATAACTTATAAATAGTATCTTTGTATCCTTAGCGTCA
CACACTGCTAGAAATTCATCTGAGATACAGGTTGTTACAGTAACACTGGT
GGTTTAACAAAATGAAGATTCTTGCATTGACGTTATTAGTATTTTGTGCT
ATAATTCAGGTAACTAACTAACCTTCTTTTATTCTGAGTTTTTGACAACA
TAATAAGTGAATTAATTTTCGCGAGACAATTTTTTCTCAAAAATAAATAA
AATGGTAGTATAGATATTTTCGCGAGCATAGAAAATAAGAATTTTCGCGA
GGATAAAATTTCGCGAATCACCTGACCCAATTTCTTTCATTTTCCTAGGG
ATTTGTTTGGAAAAAAATAATGATTTTGAATTTTGCGCGAGGATTATGTT
TCTTACTGTAGAGTTCAAAGATTTTAACAATGTTCACCATAGCATTAAAT
TTCGCGCAAAGTTTCGGAAAAACTCGCGACTCTCGCGAAATATAATCATT
GTGTTAATTAATCCACTTGAGTAGCCTAATGAGAGTAAATAAGCAAACGG
AATTGAACTTTTTCTTTATCGAAGGGGTATTAATAGTCGGTAGAGATTCA
CAAAATATATTTCTTGGTTGTGGATTAAAAAATGGGCTATTCCAGAAAAA
TTTGTACTCCTTGTGTTAAGGAGGTCTTTTTTGGGAAAGATTACCCCCTC
CCTCTGGATTATTTTTTCACTTTGTGGACCACCCTGGATTTTCGACCTCG
TTTTACTGACCACCCTGGACTTTTACAATCGATACCAGACTACTATCCTG
GACGCCACACCTCCTCAACAAAGGAGGTACAGACTATTTCTGGAATAGCC
CGTGTGAATACAGCGTGTCTTATTAAAAATAATATATAATCTATAATTCG
AATCTATAATTTGAATTATTATTTTTTGATAATAAGCTATATTTTCGAGA
TACTCTCTACCTATTCAACAGTGTATGGTTGAAATCAAAGTTGTTCTTTG
TCGAAAATTTAAACCATCAATACCAAATTTAAGTTTTGCTGCTTAAAGGA
ATGTATACCACTAATGTCACACTTTTTGGACCTACCCCGGTGGGGTGGAG
GTCCTATAAATTAACCCATGTTCGTTCGTTCGTTAGTTAGTGTGTTAGTT
ACCAGCTTTTCTCGAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACA
AAGGTGCATGACCATAAACCCTCGAATGTGACGGAGCCCGATTTTCGAAA
AAAAATGTTTTTGGGCAAATTTGGGCCAAAAAACGGCTTAAAAACGGGTT
TTTTGGACTTTGTGAAAAATTAGATCATTAATTTTTTCTGATTTTTAGCA
TGAAAGTAGGGTACAATCTTAGTTAAAGGATGGCTCAAGCAGATTTTTGC
AAAACATTTTTTTTGGCTCAAAAATCGCATTTTTATCTATAAGAACCACT
TTTAATAAGAATNNTTTTTATTTCTTTTTCAAAAATCTTTTTCAATAATA
GTTTCTCTCAATAGATATGCTTTCATTTTCTTTATTTTTTTGTATTTTGA
CCAGTTATGTCTTATGTGTTTCATTGTTTCAATGTTCACTGATTAGTTTG
ATAACCAGGTAGGTCCATAAAAGTATCGCTTGTTTTCTTTAGCTGAACCC
AACAAGTGCTTGGTGGTCTAAGAGTGGCGGTGGTGGTAGTGGAGCCACGC
GCAGCCATGACATTAACTCACAAAGTGGTTTGACAAACCTTTACAACCAA
AAGATCAAAACTATCGAACGAGTGTCAAGAAAAATGCCATATGTTCCAAT
CTTCAAGCATCAGGGTGTTCGGTAAGTGTTTACGCAACCTTGAAGAGGAG
GGATCATAACTTCCTTTACTTTATTTTTGTATTTTTGCAAAGAAGTTGGA
GGAGTAGAGTCCCTTTACCTCCAACAAGTTATCTCGTCTCTTCACTCAGC
AATGCCTTATAAACCTTGCTCCTTAGCTCGAGATTTCTACAAGTCGAACA
AATTTGTGTTCTCGGTGCGTGTTCTAGTTATGGAGACTCCACTCTTAATC
TTCAGACATTCAAGTTTTGTTTTTGGGGTAAATTGGGTTATGAAAGGGGG
TCTAGAATTGTAGATAAGCTAGCCAAAATTAACATTCCCTACCACTCTCT
ATTTAGTCTCAATATTTTAGTCTTCTCCGTTTGTTAACCCAGCCCACGGG
GACCCTTTGTAGGAAGTCTTAGTTACTAACCAAAAAAAACCTTCAAGAGA
CAAATAGACATTTCAGTTGATTGTTTTCTCCATAGAGTTACCCTTGACGA
TGGCAGTAAGTTTCTGGTCCATAAGGGTTCTGGCTATGGTGGCCGAGGTG
GACAAAATGTTGTCACTAATGCCCGTCATATGAGTAAGAAATGGTCTGGC
GCCGGTGCACGTAAGGTCAATAGTGGCGCCACACTTGGGGACTTGGTAAA
AGCTGGAGGAAAGAATTATAATGTTGCTGTGGATAATTGTTACCATGGCG
CTACAAGAATGGAAAAGAAGGCTGATGGAAACTAATTTAGGAGATGTATT
TTTTGCATTCGGATTTTTCTAAATGATTTCCGTGAAAACCGTGAAAAATA
CTTATTACTATTCCTAAGATACTGTAATTTCGACGGGTAATCTTTAGTTG
GGACTATTTGCCTTTTTATTTTGTAATTTTGAGTATATTTTTCATGTAAT
TCTTCTTTTTTTTTTAATTTAGCCCATTATTTGTAATAGTTATCGCATGA
CTTCGAGTGAAATACGATAAATATTTTACGAGTTCTGGACTTTTTCCGTA
ATATTTTCCGAAAAATATCGGAAAAAGTACGGAACGAGTGCGATAACTCA
TTTATTGTCGACCCCAAAAAAATTTATTGTTTTTCGATAAAGTTCAAATA
TCAAATTCTAAAAGCAGTCACATTTCTACTTTTTATCGATACAAAGGTCA
AAACAAAAAAATTTGAAAATGTTTATTCACAATATTTCATTACTTTTTCA
TTATAAACCTTAAAATCTCTTATATCTCTTTTACATTTAGAAATTTTTTA
AGAATATCAATATTTTATGATTTAGTTATTCATGTGCACCAAATTTCGAA
AGAATTTAACCATGAATAAGTTTACCGCGAGTTTATTTTATTTGAAACTC
TGTAGGAATTATTAGGAAATTTTAATTCTTAAGTTAAGTTTAAACTGCGT
CCATGTTAAGTTAATTAAAATGACCGTAAGGAAAATTGTCCAGAGATTCA
AATATATAAGAATTTAAAGAAAATAACGACGTTATGTAGAAAATCAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059080-exon-scaffold_316-1575043694:233729..234337 | TCONS_00059080-exon-scaffold_316-1575043694:233729..234337 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1575043694:232067..232245 | TCONS_00059080-exon-scaffold_316-1575043694:232067..232245 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1575043694:230588..231602 | TCONS_00059080-exon-scaffold_316-1575043694:230588..231602 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1510915933:233729..234337 | TCONS_00059080-exon-scaffold_316-1510915933:233729..234337 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1510915933:232067..232245 | TCONS_00059080-exon-scaffold_316-1510915933:232067..232245 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1510915933:230588..231602 | TCONS_00059080-exon-scaffold_316-1510915933:230588..231602 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1491911889:233729..234337 | TCONS_00059080-exon-scaffold_316-1491911889:233729..234337 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1491911889:232067..232245 | TCONS_00059080-exon-scaffold_316-1491911889:232067..232245 | Clytia hemisphaerica | exon |
| TCONS_00059080-exon-scaffold_316-1491911889:230588..231602 | TCONS_00059080-exon-scaffold_316-1491911889:230588..231602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_316 | supercontig | scaffold_316:230588..234337 - |
Blast
The following BLAST results are available for this feature:
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