TCONS_00059109 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059109
Unique NameTCONS_00059109
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length882

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059109 ID=TCONS_00059109|Name=TCONS_00059109|organism=Clytia hemisphaerica|type=transcript|length=882bp
TTTGTGTGTCTGAAGAACCGTAATCTAACGTCGAGATGGTCAAGCCAGCA
AAGCAACTTGGTTCAAAAATGATATCAAATTCACTGAGACGAAATATATT
ACCATTGATATCGGATCGAGACTCGTGCTTGTCGTGTCGAGCGTTTGTCT
ACGTTGAAGACAGACAGGATAATGAAAACCTACCAGAACAAATGGTAAAA
CTCGACAAGAAATTGCAAACAAGCAGTGGTATAAAATTCTTTTTATCCTG
TATAAGCGGTACCACGTCGAATGGACATGGCAGCGAAGTCATCAGACCGT
GCATTTCTTATTTCATTTGTTTTGATAAGAACACTGACGAAGAAGCTGTT
TTTTCGTTATTCCATGATAACGAAATGGATCCAACAGTAAAAAAGATCGG
AAAAAGTGACAACAAAAAGAACAAGGATGATATTTTGAAAGAATTGGCAA
TCGttttaaagGATCACAACAGCGCGTATGCCAGAAACATAATGGAAAAT
CCGACAAACATCCAACAGAACAGCAAACAGCCAGCAAAAAATCCCGAAGA
ATTATATCCTTGTAGAATGTTTGCAAATCAGACACTTGGTGGAAATGTTA
CTAATACCGTTACCAATCTCAAAATTCAAGGCTGCCTCaacgtaaaattt
gaaaattcgtttTCAGTGGTACCAGAAGTAACTCAAAATAATCAACAAAA
CGACTTGGAGCATCTGTGAAAGCTATTGATGATGTGAATAAGTTCATGAT
GAAATATGACTATCGTTTAAACAATGGAAACGTTTATTGTAAACCGGACG
AAGCATCTTTTGCATTCGTACACGTATGTGACGCAAGTCAATTTCTACAT
ATACTACAAAAGAATCCAGAAATTGGTCTCGA
Run BLAST on NCBI

protein sequence of TCONS_00059109-protein

>TCONS_00059109-protein ID=TCONS_00059109-protein|Name=TCONS_00059109-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MVKPAKQLGSKMISNSLRRNILPLISDRDSCLSCRAFVYVEDRQDNENLP
EQMVKLDKKLQTSSGIKFFLSCISGTTSNGHGSEVIRPCISYFICFDKNT
DEEAVFSLFHDNEMDPTVKKIGKSDNKKNKDDILKELAIVLKDHNSAYAR
NIMENPTNIQQNSKQPAKNPEELYPCRMFANQTLGGNVTNTVTNLKIQGC
LNVKFENSFSVVPEVTQNNQQNDLEHL
Run BLAST on NCBI

transcript from alignment at scaffold_317:50124..51552-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059109 ID=TCONS_00059109|Name=TCONS_00059109|organism=Clytia hemisphaerica|type=transcript|length=1429bp|location=Sequence derived from alignment at scaffold_317:50124..51552- (Clytia hemisphaerica)
TTTGTGTGTCTGAAGAACCGTAATCTAACGTCGAGATGGTCAAGCCAGCA
AAGCAACTTGGTTCAAAAATGATATCAAATTCACTGAGACGAAATATATT
ACCATTGGTAAGTTTTAAACATTTTTTCCCAATATTTGCATTGATTTTAT
TTATTTTCTTCCGTTTGATATTTGTTGAAAATTGTGAACGAATTCGATTG
AAAAGATCCAAAAGATCATTGAGATAATCAACTAAATAATTTAATTTCAG
ATATCGGATCGAGACTCGTGCTTGTCGTGTCGAGCGTTTGTCTACGTTGA
AGACAGACAGGATAATGAAAACCTACCAGAACAAATGGTAAAACTCGACA
AGAAATTGCAAACAAGCAGTGGTATAAAATTCTTTTTATCCTGTATAAGC
GGTACCACGTCGAATGGACATGGCAGCGAAGTCATCAGACCGTGCATTTC
TTATTTCATTTGTTTTGATAAGAACACTGACGAAGAAGCTGTTTTTTCGT
TATTCCATGATAACGAAATGGATCCAACAGTAAAAAAGATCGGAAAAAGT
GACAACAAAAAGAACAAGGATGATATTTTGAAAGAATTGGCAATCGTTTT
AAAGGTAATTTTTTAATGGTTTTTAACGGCAAGTTTGATTGTTTCGTGTG
GTTTCAGTATGGATCTTTAAATTTTGAAAAGCCTTAACTTGATTTGATTT
TGCTTGTCAGTTTTAAGAGTTTATAACCAAACTATAACCAAAATGTTATG
TAGAGGGACTTTATCAATTTTTTAAAGTTTACAGATTCGCAACTGTTCGT
TTTCAGGATCACAACAGCGCGTATGCCAGAAACATAATGGAAAATCCGAC
AAACATCCAACAGAACAGCAAACAGCCAGCAAAAAATCCCGAAGAATTAT
ATCCTTGTAGAATGTTTGCAAATCAGACACTTGGTGGAAATGTTACTAAT
ACCGTTACCAATCTCAAAATTCAAGGCTGCCTCAACGTAAAATTTGAAAA
TTCGTTTTCAGTGGTACCAGAAGTAACTCAAAATAATCAACAAAACGACT
TGGAGCATCTGTGAAAGCTATTGATGATGTGAATAAGTTCATGATGAAAT
ATGACTATCGTTTAAACAATGGAAACGTTTATTGTAAACCGGACGAAGGT
AATTATAAGTCTGATTCACTGTAATAGAAACAAAGATTTAACCCAAGACC
TAATGCTAACAAATTCTCTCTGATCGGCCGAAAATAATCACAAATTTGAT
TTTTGATTTAATGGCTATTACAAGATATATTCAGTCACCATAAAATTCGA
ACTACTTTCTTTTGATAAAATGTAACAAGTGTTTTGATTTTAAATTTCAG
CATCTTTTGCATTCGTACACGTATGTGACGCAAGTCAATTTCTACATATA
CTACAAAAGAATCCAGAAATTGGTCTCGA

Coding sequence (CDS) from alignment at scaffold_317:50124..51552-

>TCONS_00059109 ID=TCONS_00059109|Name=TCONS_00059109|organism=Clytia hemisphaerica|type=CDS|length=2052bp|location=Sequence derived from alignment at scaffold_317:50124..51552- (Clytia hemisphaerica)
GATCACAACAGCGCGTATGCCAGAAACATAATGGAAAATCCGACAAACAT
CCAACAGAACAGCAAACAGCCAGCAAAAAATCCCGAAGAATTATATCCTT
GTAGAATGTTTGCAAATCAGACACTTGGTGGAAATGTTACTAATACCGTT
ACCAATCTCAAAATTCAAGGCTGCCTCAACGTAAAATTTGAAAATTCGTT
TTCAGTGGTACCAGAAGTAACTCAAAATAATCAACAAAACGACTTGGAGC
ATCTGTGAATATCGGATCGAGACTCGTGCTTGTCGTGTCGAGCGTTTGTC
TACGTTGAAGACAGACAGGATAATGAAAACCTACCAGAACAAATGGTAAA
ACTCGACAAGAAATTGCAAACAAGCAGTGGTATAAAATTCTTTTTATCCT
GTATAAGCGGTACCACGTCGAATGGACATGGCAGCGAAGTCATCAGACCG
TGCATTTCTTATTTCATTTGTTTTGATAAGAACACTGACGAAGAAGCTGT
TTTTTCGTTATTCCATGATAACGAAATGGATCCAACAGTAAAAAAGATCG
GAAAAAGTGACAACAAAAAGAACAAGGATGATATTTTGAAAGAATTGGCA
ATCGTTTTAAAGATGGTCAAGCCAGCAAAGCAACTTGGTTCAAAAATGAT
ATCAAATTCACTGAGACGAAATATATTACCATTGGATCACAACAGCGCGT
ATGCCAGAAACATAATGGAAAATCCGACAAACATCCAACAGAACAGCAAA
CAGCCAGCAAAAAATCCCGAAGAATTATATCCTTGTAGAATGTTTGCAAA
TCAGACACTTGGTGGAAATGTTACTAATACCGTTACCAATCTCAAAATTC
AAGGCTGCCTCAACGTAAAATTTGAAAATTCGTTTTCAGTGGTACCAGAA
GTAACTCAAAATAATCAACAAAACGACTTGGAGCATCTGTGAATATCGGA
TCGAGACTCGTGCTTGTCGTGTCGAGCGTTTGTCTACGTTGAAGACAGAC
AGGATAATGAAAACCTACCAGAACAAATGGTAAAACTCGACAAGAAATTG
CAAACAAGCAGTGGTATAAAATTCTTTTTATCCTGTATAAGCGGTACCAC
GTCGAATGGACATGGCAGCGAAGTCATCAGACCGTGCATTTCTTATTTCA
TTTGTTTTGATAAGAACACTGACGAAGAAGCTGTTTTTTCGTTATTCCAT
GATAACGAAATGGATCCAACAGTAAAAAAGATCGGAAAAAGTGACAACAA
AAAGAACAAGGATGATATTTTGAAAGAATTGGCAATCGTTTTAAAGATGG
TCAAGCCAGCAAAGCAACTTGGTTCAAAAATGATATCAAATTCACTGAGA
CGAAATATATTACCATTGGATCACAACAGCGCGTATGCCAGAAACATAAT
GGAAAATCCGACAAACATCCAACAGAACAGCAAACAGCCAGCAAAAAATC
CCGAAGAATTATATCCTTGTAGAATGTTTGCAAATCAGACACTTGGTGGA
AATGTTACTAATACCGTTACCAATCTCAAAATTCAAGGCTGCCTCAACGT
AAAATTTGAAAATTCGTTTTCAGTGGTACCAGAAGTAACTCAAAATAATC
AACAAAACGACTTGGAGCATCTGTGAATATCGGATCGAGACTCGTGCTTG
TCGTGTCGAGCGTTTGTCTACGTTGAAGACAGACAGGATAATGAAAACCT
ACCAGAACAAATGGTAAAACTCGACAAGAAATTGCAAACAAGCAGTGGTA
TAAAATTCTTTTTATCCTGTATAAGCGGTACCACGTCGAATGGACATGGC
AGCGAAGTCATCAGACCGTGCATTTCTTATTTCATTTGTTTTGATAAGAA
CACTGACGAAGAAGCTGTTTTTTCGTTATTCCATGATAACGAAATGGATC
CAACAGTAAAAAAGATCGGAAAAAGTGACAACAAAAAGAACAAGGATGAT
ATTTTGAAAGAATTGGCAATCGTTTTAAAGATGGTCAAGCCAGCAAAGCA
ACTTGGTTCAAAAATGATATCAAATTCACTGAGACGAAATATATTACCAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037228XLOC_037228Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059109-proteinTCONS_00059109-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059109-exon-scaffold_317-1575043694:51446..51552TCONS_00059109-exon-scaffold_317-1575043694:51446..51552Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1575043694:50949..51302TCONS_00059109-exon-scaffold_317-1575043694:50949..51302Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1575043694:50405..50746TCONS_00059109-exon-scaffold_317-1575043694:50405..50746Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1575043694:50124..50202TCONS_00059109-exon-scaffold_317-1575043694:50124..50202Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1510915933:51446..51552TCONS_00059109-exon-scaffold_317-1510915933:51446..51552Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1510915933:50949..51302TCONS_00059109-exon-scaffold_317-1510915933:50949..51302Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1510915933:50405..50746TCONS_00059109-exon-scaffold_317-1510915933:50405..50746Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1510915933:50124..50202TCONS_00059109-exon-scaffold_317-1510915933:50124..50202Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1491911889:51446..51552TCONS_00059109-exon-scaffold_317-1491911889:51446..51552Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1491911889:50949..51302TCONS_00059109-exon-scaffold_317-1491911889:50949..51302Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1491911889:50405..50746TCONS_00059109-exon-scaffold_317-1491911889:50405..50746Clytia hemisphaericaexon
TCONS_00059109-exon-scaffold_317-1491911889:50124..50202TCONS_00059109-exon-scaffold_317-1491911889:50124..50202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_317supercontigscaffold_317:50124..51552 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.738021	0.8225	0.0596875	0.23358	0.284361	0.0561764	0	0.126899	0.0444226	0	0.213633	0.105325	0.0701193	0.182049	0.0598676	0.192741	0	0.0405616	0	0	0	0.0745821	0.362657	0.38466	0.0565986	0.252565	0.0722838	0	0.175531	0.238452
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059109 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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