TCONS_00059113 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059113
Unique NameTCONS_00059113
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length588

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059113 ID=TCONS_00059113|Name=TCONS_00059113|organism=Clytia hemisphaerica|type=transcript|length=588bp
gaaaaaatcaaaacacaagCGAGAAGCGACAAGCAGAAAAACTTTAatta
gaaaattagaaactCTGACTTCTATTCTAATCTAAATGaatgtgaaaatg
ttttactgGTAATCAAATCATCTTCGTAACAGAAAGATACAAATTGAAGT
TTTATGATATGGGCTCCTCTCCTCAAGTGCTAAAGGAAACGCGACAGCCT
GATATATCAAACTGACTTCATATCTAACAATTGATCGTCAACAGATTGGA
AATCATCTAATCAGAAAGATGAACTCAAAGTTAAGATGATCAAAAGATGA
GCTTCAAAGATTTTAGGacacttttaaacttttgaggACGACCTTACCTA
CAGTACCAAAAGACAGATGAGTTAAAGAACTAATATGttgtgaatgtttt
gattatcaattttattattGGGCTGACCACTTTTCTACTTAACTTTGGTG
TTTGCAAAACTTGCAGATATATGAAActctaaaaaggctgatttcatAAA
TGGTGGAATGATTGACCCAATCTTATTGAATTCTTGGAATTGGAAActtg
agaatatttttggtatttttttgaaTGACATAGTACAT
Run BLAST on NCBI

transcript from alignment at scaffold_317:68039..68626

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059113 ID=TCONS_00059113|Name=TCONS_00059113|organism=Clytia hemisphaerica|type=transcript|length=588bp|location=Sequence derived from alignment at scaffold_317:68039..68626 (Clytia hemisphaerica)
ATGTACTATGTCAttcaaaaaaataccaaaaatattctcaagTTTCCAAT
TCCAAGAATTCAATAAGATTGGGTCAATCATTCCACCATTTatgaaatca
gcctttttagagTTTCATATATCTGCAAGTTTTGCAAACACCAAAGTTAA
GTAGAAAAGTGGTCAGCCCaataataaaattgataatcaaaacattcaca
aCATATTAGTTCTTTAACTCATCTGTCTTTTGGTACTGTAGGTAAGGTCG
TcctcaaaagtttaaaagtgtCCTAAAATCTTTGAAGCTCATCTTTTGAT
CATCTTAACTTTGAGTTCATCTTTCTGATTAGATGATTTCCAATCTGTTG
ACGATCAATTGTTAGATATGAAGTCAGTTTGATATATCAGGCTGTCGCGT
TTCCTTTAGCACTTGAGGAGAGGAGCCCATATCATAAAACTTCAATTTGT
ATCTTTCTGTTACGAAGATGATTTGATTACcagtaaaacattttcacatt
CATTTAGATTAGAATAGAAGTCAGagtttctaattttctaatTAAAGTTT
TTCTGCTTGTCGCTTCTCGcttgtgttttgattttttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037232XLOC_037232Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059113-exon-scaffold_317-1491911889:68039..68626TCONS_00059113-exon-scaffold_317-1491911889:68039..68626Clytia hemisphaericaexon
TCONS_00059113-exon-scaffold_317-1510915933:68039..68626TCONS_00059113-exon-scaffold_317-1510915933:68039..68626Clytia hemisphaericaexon
TCONS_00059113-exon-scaffold_317-1575043694:68039..68626TCONS_00059113-exon-scaffold_317-1575043694:68039..68626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_317supercontigscaffold_317:68039..68626 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165067	0	0	0	2.31308	0.754266	2.17959	0.965626	0.324416	0.803024	0.96244	0.364414	0.699584	0.0742343	0.264126	0.729289	0.345953	0.390122	1.23042	3.64699	0	0.368617	0.697618	0.335156	0.653792	0.94142	3.62249	3.00411	1.73458	1.40536
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059113 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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