TCONS_00059116 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059116
Unique NameTCONS_00059116
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059116 ID=TCONS_00059116|Name=TCONS_00059116|organism=Clytia hemisphaerica|type=transcript|length=1213bp
GTAAAGTGTGATAACTAGTTTAttgtcaacttgaaaaatatcaacaaact
ttaGCCTCTCCATTTGTGtctctttttttatcttttttttcactTCGTGT
ATTTTGGTGAAATCAACATTCGACTCTTCAGAAATGATTcgaatggtcat
taaaatatcaaaacattctattgacaacttttgtgagtattgagaggaaa
aaagaaaacattcttgAGAATAAATTTTGGGATAAGATGCAAAAGTAAgt
acaaaatatgatctctcgcttaccagacccctttttcgaacgcggtcttg
tatttgtacggtacaatatgaaatacagcatttatgtacgcgtttttagc
cagtcagattgctcatatttttcatgttgacaaTAAATGTATCTAAAATT
TAATCGTCAATAATCTCAAATCAAAGGTTTATTTTCATCTGGGTCGACTA
CCGAATTGGCAATCTGTCGTTTTTGCCGAAACTGATTGACTTCAGTGATA
AATTGTCTCATTAGGAGAACAGCGgcaatgacgtcacaagcaatcAACAT
ATAGAAGACGTCATCCCACGAGTGTGCTGAAATGACACCTGCCATTAACG
GTCCTACAGCAGCGCCTAGTGACCCAGTAGCATCAATAATAGAGGTTACA
ACAGCCATTGCTTTCGTATTTCCTCGTAAGCATTCGTGTGTGCCAAGGCT
TGCCGACACAGCGGTAGTTATCAAAGCATAAGGACCATTAACAAAAAAGC
CAGATAAAATCCAGTTTGGCGAAAAATAGGCATAAGGAGTACTCAATGAC
TCCAGGAATACGTAAAGCACCCCAGAGTCCGATAGGTTGTGGCTCGTGTG
CTGTCAGGTCGTCTTCATCGATAGAAGACCAAGGATTCGGACTGACCAGA
TTCGACCGCTCATGTTTACGTTTAAAGTTTGCAGAACCAGATTGTGACAA
ATCATCATCTTTTTTGTTCTCATCCTCCATGTCTACAAAAGAAGGCTCGG
GCACCAAGAAAACAATATTCAACACACCCATGACCGCTATCATTGCTCCT
GGGATGATGAATGATAATCCCCAGGCGCTTTTGACGAAAGAGGCGGCGAT
TGCAGACCCTATAATATTGCCGACGGATACGTGTGTATTCCATATTCCCA
TGACAAAACCTCTGCGACCCTCGGGAAACCACGATCCAACAGCTTCAACG
ACACATGGCCAAC
Run BLAST on NCBI

transcript from alignment at scaffold_318:28837..30315+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059116 ID=TCONS_00059116|Name=TCONS_00059116|organism=Clytia hemisphaerica|type=transcript|length=1479bp|location=Sequence derived from alignment at scaffold_318:28837..30315+ (Clytia hemisphaerica)
GTAAAGTGTGATAACTAGTTTAttgtcaacttgaaaaatatcaacaaact
ttaGCCTCTCCATTTGTGtctctttttttatcttttttttcactTCGTGT
ATTTTGGTGAAATCAACATTCGACTCTTCAGAAATGATTcgaatggtcat
taaaatatcaaaacattctattgacaacttttgtgagtattgagaggaaa
aaagaaaacattcttgAGAATAAATTTTGGGATAAGATGCAAAAGTAAgt
acaaaatatgatctctcgcttaccagacccctttttcgaacgcggtcttg
tatttgtacggtacaatatgaaatacagcatttatgtacgcgtttttagc
cagtcagattgctcatatttttcatgttgacaaTAAATGTATCTAAAATT
TAATCGTCAATAATCTCAAATCAAAGGTTTATTTTCATCTGGGTCGACTA
CCGAATTGGCAATCTGTCGTTTTTGCCGAAACTGATTGACTTCAGTGATA
AATTGTCTCATTAGGAGAACAGCGgcaatgacgtcacaagcaatcAACAT
ATAGAAGACGTCATCCCACGAGTGTGCTGAAATGACACCTGCCATTAACG
GTCCTACAGCAGCGCCTAGTGACCCAGTAGCATCAATAATAGAGGTTACA
ACAGCCATTGCTTTCGTATTTCCTCGTAAGCATTCGTGTGTGCCAAGGCT
TGCCGACACAGCGGTAGTTATCAAAGCATAAGGACCATTAACAAAAAAGC
CAGATAAAATCATgtagaaaataaacaaagataaTTTTGATTCACCATGG
AATTTAAACAAGAATAAGCAAGGAGCTGCCAAAACCAACATACTAACATT
GATAATACCTGGGGCTTTAGTTCGGTCAACTAAAAACCCAGCAGTGATCC
CTCCTAAAGCGCCTCCAACATCGAAAAGGATGGCCCAGTCTGCAGCCTTA
GCATCATCATACTGTACCCCTCCAATAGTGATATTGGTAATGTAAAGGGG
CAACCAAAATAAGAAAGTATAGCTTACCAGTTTGGCGAAAAATAGGCATA
AGGAGTACTCAATGACTCCAGGAATACGTAAAGCACCCCAGAGTCCGATA
GGTTGTGGCTCGTGTGCTGTCAGGTCGTCTTCATCGATAGAAGACCAAGG
ATTCGGACTGACCAGATTCGACCGCTCATGTTTACGTTTAAAGTTTGCAG
AACCAGATTGTGACAAATCATCATCTTTTTTGTTCTCATCCTCCATGTCT
ACAAAAGAAGGCTCGGGCACCAAGAAAACAATATTCAACACACCCATGAC
CGCTATCATTGCTCCTGGGATGATGAATGATAATCCCCAGGCGCTTTTGA
CGAAAGAGGCGGCGATTGCAGACCCTATAATATTGCCGACGGATACGTGT
GTATTCCATATTCCCATGACAAAACCTCTGCGACCCTCGGGAAACCACGA
TCCAACAGCTTCAACGACACATGGCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037234XLOC_037234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059116-exon-scaffold_318-1491911889:28837..29597TCONS_00059116-exon-scaffold_318-1491911889:28837..29597Clytia hemisphaericaexon
TCONS_00059116-exon-scaffold_318-1510915933:28837..29597TCONS_00059116-exon-scaffold_318-1510915933:28837..29597Clytia hemisphaericaexon
TCONS_00059116-exon-scaffold_318-1575043694:28837..29597TCONS_00059116-exon-scaffold_318-1575043694:28837..29597Clytia hemisphaericaexon
TCONS_00059116-exon-scaffold_318-1491911889:29864..30315TCONS_00059116-exon-scaffold_318-1491911889:29864..30315Clytia hemisphaericaexon
TCONS_00059116-exon-scaffold_318-1510915933:29864..30315TCONS_00059116-exon-scaffold_318-1510915933:29864..30315Clytia hemisphaericaexon
TCONS_00059116-exon-scaffold_318-1575043694:29864..30315TCONS_00059116-exon-scaffold_318-1575043694:29864..30315Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_318supercontigscaffold_318:28837..30315 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.80831	2.33645	1.90367	3.135	17.9088	14.4496	13.0966	16.0951	12.4947	12.163	10.4966	7.42161	6.0485	5.67603	6.56175	8.2549	9.83003	6.95483	5.55415	6.18375	9.92008	7.72901	6.97845	7.06412	10.9945	11.0616	10.3621	4.53754	13.8822	10.9365
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011701MFS
IPR020846MFS_dom
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
Blast
[Close]
BLAST of TCONS_00059116 vs. Swiss-Prot (Human)
Match: G6PT3 (Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 1.842e-33
Identity = 73/159 (45.91%), Postives = 93/159 (58.49%), Query Frame = -3 
Query:  762 WPCVVEAVGSWFPEGRRGFVMGIWNTHVSVGNIIGSAIAASFVKSAWGLSFIIPGAMIAVMGVLNIVFLVPEPSFVDME--------DENKKD-DDLSQSGSANFKRKHERSNLVSPNPWSSIDEDDLTAHEPQPIGLWGALRIPGVIEYSLCLFFAKL 1211
            WP VV  VG+WF +G+RGF+MGIWN+H SVGNI+GS IA  +V   WGLSFI+PG + AVMGV+  +FL+  P  VD           EN+ + +D   S  +  +   E     S  P            EP  I  +GALRIPGV+E+SLCL FAKL
Sbjct:  161 WPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIAGIWVNGQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGP----------CEEPAAISFFGALRIPGVVEFSLCLLFAKL 309

HSP 2 Score: 117.472 bits (293), Expect = 7.191e-29
Identity = 57/95 (60.00%), Postives = 75/95 (78.95%), Query Frame = -1 
Query:  476 ILSGFFVNGPYALITTAVSASLGTHECLRGNTKAMAVVTSIIDATGSLGAAVGPLMAGVISAHSWDDVFYMLIACDVIAAVLLMRQFITEVNQFR 760
            I+ G  VNGPYALITTAVSA LGTH+ L+GN KA++ VT+IID TGS+GAA+GPL+AG+IS   W++VFYMLI+ DV+A +LL R    E+  ++
Sbjct:  395 IICGGLVNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAALGPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKEILAWK 489
The following BLAST results are available for this feature:
BLAST of TCONS_00059116 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G6PT31.842e-3345.91Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapi... [more]
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