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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059278 ID=TCONS_00059278|Name=TCONS_00059278|organism=Clytia hemisphaerica|type=transcript|length=1190bp
accatccaagaattctccctccaaatttgaggtctctagctacactagaa
aaagagatatgcaaaatttaagaagcatgactggaaaatttctttttttt
cttttatgacacatttttcgaatttttcaaagctattttcctaacctttt
tttgacatttttagtcaaatttttgacactaaaatttgaatatctttaca
accactaatcctctggaggcctatgacccctcattttctttctttttcaa
agctctacaagataggatagattttgaaaaaaaaattaaaacttgaaaaa
tcttctggagttgctacccCATCGCCCATCGGCCGCTATCGGCCGATgat
gatccaagccacgataaacttccaatatccatttctagtgtgactaactg
cctgcACACACAACACAGAGATCCCAGGAGTCCCATGCATTGGCAGGGTG
TTGTCTGGtggtcaaattttgaaaactgaaaaagcaaaaaaaatattaaa
gaagaataattttcttttcttaccAGGGACATGTTACGTCTGCTGTGACG
ACGATTTTAAACTCAACAAAGTTATTACCATCAGCAGACATCACTGATGT
ATGTTTACATTAGGTATATTAGACCATTGATTTGTTTGCTAATAGTAACT
GGTTGAGacgtatttgaatttttttggaagCCATCTGCAAGTTCAACTCT
CTACAGCTCTCTTCGCTTTGCTTTGGTTGTTTCACTCACCCTCCCCCTTT
GAGACTCCACGTTAACGGAtttatttttccgatttttaaaGGCGCGAAAG
TAGTAATTCCAAATCGGGGAAATTCGGATTTGACGGATTCGATTTGTTTA
TAAGGGAGAAAGAAAGCTCAACTACCCGTCTGACAGAGATCCCGTGACCC
TCACACAGTCAGTCATAAGGTTCAACATCAATCACAAAAGCACAAAGTGT
CACTTGATATTTCCATGAAAGAAGCAAATGTTTGAGCAATAAGTTATTAT
ATTTTTTACCACTTGAATTGACACATCTTATACAATCAAGTATCCAAGTG
GTTGAAGACAAAGATGAAGGTGCTACTTCTCCTCCTCTCACTGCTTTCTT
TCGATTACCATACATTGATCCAAACAGAAACTTCAATCGAAAACGTCGTT
AATCCAAAGAtgaccaaaaaattttcttcaaagtccACAA Run BLAST on NCBI transcript from alignment at scaffold_323:30040..31775- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059278 ID=TCONS_00059278|Name=TCONS_00059278|organism=Clytia hemisphaerica|type=transcript|length=1736bp|location=Sequence derived from alignment at scaffold_323:30040..31775- (Clytia hemisphaerica)
ACCATCCAAGAATTCTCCCTCCAAATTTGAGGTCTCTAGCTACACTAGAA
AAAGAGATATGCAAAATTTAAGAAGCATGACTGGAAAATTTCTTTTTTTT
CTTTTATGACACATTTTTCGAATTTTTCAAAGCTATTTTCCTAACCTTTT
TTTGACATTTTTAGTCAAATTTTTGACACTAAAATTTGAATATCTTTACA
ACCACTAATCCTCTGGAGGCCTATGACCCCTCATTTTCTTTCTTTTTCAA
AGCTCTACAAGATAGGATAGATTTTGAAAAAAAAATTAAAACTTGAAAAA
TCTTCTGGAGTTGCTACCCCATCGCCCATCGGCCGCTATCGGCCGATGAT
GATCCAAGCCACGATAAACTTCCAATATCCATTTCTAGTGTGACTAACTG
CCTGCACACACAACACAGAGATCCCAGGAGTCCCATGCATTGGCAGGGTG
TTGTCTGGTGGTCAAATTTTGAAAACTGAAAAAGCAAAAAAAATATTAAA
GAAGAATAATTTTCTTTTCTTACCAGGGACATGTTACGTCTGCTGTGACG
ACGATTTTAAACTCAACAAAGTTATTACCATCAGCAGACATCACTGATGT
ATGTTTACATTAGGTATATTAGACCATTGATTTGTTTGCTAATAGTAACT
GGTTGAGACGTATTTGAATTTTTTTGGAAGCCATCTGCAAGTTCAACTCT
CTACAGCTCTCTTCGCTTTGCTTTGGTTGTTTCACTCACCCTCCCCCTTT
GAGACTCCACGTTAACGGATTTATTTTTCCGATTTTTAAAGGCGCGAAAG
TAGTAATTCCAAATCGGGGAAATTCGGATTTGACGGATTCGATTTGTTTA
TAAGGGAGAAAGAAAGCTCAACTACCCGTCTGACAGAGATCCCGTGACCC
TCACACAGTCAGTCATAAGGTTCAACATCAATCACAAAAGCACAAAGTGT
CACTTGATATTTCCATGAAAGAAGCAAATGTTTGAGCAATAAGTTATTAT
ATTTTTTACCACTTGAATTGACACATCTTATACAATCAAGTATCCAAGTG
GTTGAAGACAAAGATGAAGGTGCTACTTCTCCTCCTCTCACTGCTTTCTT
TCGGTATGTTTTTTAAACAATTTTTGACTTTTCTTATTGTATTCTTCTCA
TTTCTCTATTCAAGAAAGTTTTACTATAAATATACAAACTGTAAGACATG
AGGAAAAATGGGGAGTTTCCCCAAAATCTACACAAACTCATTTGCTCATG
TCAAAAACCAGACGTAATTAATCGAACCAATCAAACAGTATTTTTAATCG
AACTTTGTCGAACATAATCAAACTTTGTTGGGCGATTAATGTTCGACTAA
GTTCGGTTGTCAAACTTTAATCGAATACTCACAAATTTCTCAAAATACAA
AGTTTGATTAAGTTCGATTAGGCGGTCATCAAAAAAATGCTCTGTTTGCG
TCGCAATGTATGGCGCGCGAAAGCGCTATCACGTGCGTTTGGTTTGGGAA
CGCGAAACACGAACGCAAACTACCGTAAACGGCCATAACTTGCAACGAAA
AACAGCGTTTTTTGACTAAACGATGCTATATCTTTTAACCTAGAAAAGTT
ATAGCAACGAAACTTTCACAAAATAAGCTTCTATCTTATTCCTTTTTAGA
TTACCATACATTGATCCAAACAGAAACTTCAATCGAAAACGTCGTTAATC
CAAAGATGACCAAAAAATTTTCTTCAAAGTCCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059278-exon-scaffold_323-1575043694:30673..31775 | TCONS_00059278-exon-scaffold_323-1575043694:30673..31775 | Clytia hemisphaerica | exon |
| TCONS_00059278-exon-scaffold_323-1575043694:30040..30126 | TCONS_00059278-exon-scaffold_323-1575043694:30040..30126 | Clytia hemisphaerica | exon |
| TCONS_00059278-exon-scaffold_323-1510915933:30673..31775 | TCONS_00059278-exon-scaffold_323-1510915933:30673..31775 | Clytia hemisphaerica | exon |
| TCONS_00059278-exon-scaffold_323-1510915933:30040..30126 | TCONS_00059278-exon-scaffold_323-1510915933:30040..30126 | Clytia hemisphaerica | exon |
| TCONS_00059278-exon-scaffold_323-1491911889:30673..31775 | TCONS_00059278-exon-scaffold_323-1491911889:30673..31775 | Clytia hemisphaerica | exon |
| TCONS_00059278-exon-scaffold_323-1491911889:30040..30126 | TCONS_00059278-exon-scaffold_323-1491911889:30040..30126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_323 | supercontig | scaffold_323:30040..31775 - |
Blast
The following BLAST results are available for this feature:
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