TCONS_00059525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059525
Unique NameTCONS_00059525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1197

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059525 ID=TCONS_00059525|Name=TCONS_00059525|organism=Clytia hemisphaerica|type=transcript|length=1197bp
cgtgggttaagcaaaatgttatgtaaagGCGTGTTTGTTTGCACCAATAC
AGCCATAGCCATAAAGGGATACTTTGGATAACTAGCTAGCACACTGgaag
tttcaagaaaattgtATATAACATTATGAAGATTAGTTTCTATCTAATCC
TCCTGGTTTTTGGAACCACGtcttgttttgatttatcaGCTGAAGATGGA
AGGCTGGTATGTGGCCCTAATATGATGAAGATAAGTCTCAATGTCGACAA
ATTCAACCAACATAATCGACCATATAGAGCTTACTTCGAAGGTTATGATA
AACATCCAATCTGTTCTGTGAAACACGGAAACACTGGTGATCCATTGGAG
CTGAATTCTAAATTCAATGAATGTGGCGTTCAATTGATACAACACCAAGG
GCAGATTATCTATACTCAAATCGTTTTGGTGATTTATGGTTATAACCCGA
AATCGAGTTTGGTTTATCGTGAAGAAGCTATTCGGTTTAAAGTGGAATGC
GTTCTCCAAACGGATTTGTCAGTTGGATTAGCTGATCCTGGATATCTTAA
TGTGTCGAAAGCAGAAGTAGATGGCCtcaAAGAAGAAATCAGAGCAGATG
CAGAATTCGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCAGCTCT
GAACATTCATCCTCACAAATGCGATTGGGAGATCAAATGTATTTCAAACT
TGAATTGAACACCATCCGTGATGACTTGAAAATCTCACCACAAACTTGTT
ATGCAAGCAGTACGAAAGATTCAAGCGAAAGATATTTGTTGATCGAGGAT
GGAGGGTGCCCAAACATGGCCGATGGAACGATCAGCATTCCCTATGAAAA
CGATCAAAAGCTATTCAAATGGGAAAATGAAGCTTTCCGATTTTTCGGCG
ATTCTGACGCCGTTTACATAACGTGTAACGTGAATGTTTGTAACAGTAAT
GACTATGGAGATGATTGCTTGAGATGTAACTCGATCAAAAGACGACGACG
CCGACGTCGTGCCGTGTTTCATTTCAACGAAGAGAAAATAAACACTAAAC
AGCAAAGAGTGATTGTATCAACTCAAGTTTACAAattaatttgatgaaaa
tttgtagttgatgatttttttttgatttttcaagtatAAAAGTTAATTGT
GTGATTATCTAAAAGATTTCTTGGTGTTCTTATCTATATGATAATAG
Run BLAST on NCBI

transcript from alignment at scaffold_329:464182..468355+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059525 ID=TCONS_00059525|Name=TCONS_00059525|organism=Clytia hemisphaerica|type=transcript|length=4174bp|location=Sequence derived from alignment at scaffold_329:464182..468355+ (Clytia hemisphaerica)
cgtgggttaagcaaaatgttatgtaaagGCGTGTTTGTTTGCACCAATAC
AGCCATAGCCATAAAGGGATACTTTGGATAACTAGCTAGCACACTGgaag
tttcaagaaaattgtATATAACATTATGAAGATTAGTTTCTATCTAATCC
TCCTGGTTTTTGGAACCACGtcttgttttgatttatcaGCTGAAGGTAAA
GTAGCTTTTATTCAAAATCTCTCTGACGTTCAGAGTAAGTTTCtttcagg
cccggcggaagcggaGAGGCTgaggagacttcagcctccccacttttttt
gcaaatatataatttttttatttaaagttttttttatttagtaaTTAGCT
AAGGCTAGGGTTTTATATGCAGTACTCCTATAAATTTGATTCAATTTTAG
CCAATCTATCTAGGgcccatttttaaaaattctcttCCCCGTTGTTGGTG
CCAACCGGCAGCGCTCCCTAAAACACTAATTTTCagtctcttcactttca
aatTCGTTCGGCCGGGCCTGTCTTTATAAGTAAatccatttgaaaaattt
aagatAACTCATTTGTTACTTTTGCAACATTAAAATTCCCCTCGACCACT
GAGGTTCCACCCCAGTAAATGAAAGCTCTAAATTATTTTTGGCAATTGAA
TAACAGCATCAAAATCGAGGACAATTTCCCCGAGAGCATTTCCTCTTAGA
AAATTCCTTTCTCAGTTAAGAAACTTACTTCCATTTAACTAATCTATTTT
AGATGGAAGGCTGGTATGTGGCCCTAATATGATGAAGATAAGTCTCAATG
TCGACAAATTCAACCAACATAATCGACCATATAGAGCTTACTTCGAAGGT
TATGATAAACATCCAATCTGTTCTGTGAAACACGGAAACACTGGTGATCC
ATTGGAGCTGAATTCTAAATTCAATGAATGTGGCGTTCAATTGATACAAC
ACCAAGGGCAGATTATCTATACTCAAATCGTTTTGGTGATTTATGGTTAT
AACCCGAAATCGAGTTTGGTTTATCGTGAAGAAGCTATTCGGTTTAAAGT
GGAATGCGTTCTCCAAACGGATTTGTCAGTTGGATTAGCTGATCCTGGAT
ATCTTAATGTGTCGAAAGCAGAAGTAGATGGCCGTATGAAtaaattttat
atgatttttttaatcccTTGATTATCTTGAGGCTTGAGAGCTTTAAATGG
GTTAACATAATTGTtcccaaaaagaaaaacaaccctgtgtcacagactcg
TTGAAAAATGTGCCCAAAATTCCCAGTGGAAAAAATATACTCTTCGATTt
aagccccactgggaaattgagaGAATCATCATTTGAGCTGAGAAACAATA
AAATTGagattttaaaactttcaccGGGGCTgggagacaggggtgtagaa
AACTTTCGATTGAGTTACAGGGATCAAAATGTATTATTGGTcaatttctt
atttaaaaagtcTATGACCAAGCAAAGGTGCCTGTCCCTTTCCATTTTAA
CAGTCTATTTGAGACATCATATGCCTGAGAGGGTGTGGTTTAGTTTACAC
tacttttaaaaacatcatcaaatactctgaaaatatttacatcgattttc
atttatagtcaAAGAAGAAATCAGAGCAGATGCAGAATTCGACATCAAAT
TGGTCAGAACCACCGACGGTTCTTTCAACTCTGAANNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACATCATAT
GCCTGAGAGGGTGTGGTTTAGTTTACACtacttttaaaaacatcatcaaa
tactctgaaaatatttacatcgattttcatttatagtcaAAGAAGAAATC
AGAGCAGATGCAGAATTCGACATCAAATTGGTCAGAACCACCGACGGTTC
TTTCAGCTCTGAACATTCATCCTCACAAATGCGATTGGGAGATCAAATGT
ATTTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAATCTCACCA
CAAACTTGTTATGCAAGCAGTACGAAAGATTCAAGCGAAAGATATTTGTT
GATCGAGGATGGAGGGTAAGATACATACAAAACATTATTTCAATGCTTTC
CTCTCTCTTGGACGAATACATAAAGATTTTTATCCACGCTTCattagatt
ttgagaaactgtttttacgatcaataatcacttttaacaaaaggaATCTA
AATAGACGATAGAGCAGCCAAAGTACGATCTTATTTCATCTGATAGCAGT
TCACTGAATAAAGCCTCTGTAGTTTGTATCAATCTATAATTGACAAAATA
TGACCCGCAAAGTTTGCTTTGGTGAAAGAAATGCGAAAGTTTCCGAAGgg
caaatcactaaaataaatctcgtacacaattttataaatcaaaaataaat
cataaataaaaaataaaccaaaagtaaatcataaatcaaaaataaatcag
aaataaatcaataaatcaaaattaatcaaaaataaatcatgaataaatga
aaaatcgttcgaaaaaaaattcattttttagttttttttaattttttgac
aatGATTTTGATTATCAGTTCGTTATactataatttgaaaaaaattttcc
ataaaattactcctattcataaattagagataaatcaaaaataattcaaa
aataaatcataaataaaccataaatcaaaaataaatcaaaaataaatcag
aaataaaaaataaatcagaaataaatcataacataattcaaaaataaata
gaaaatcaaaaataaataaaaaataaatcacaaatcaaaaataaatcaaa
aataaattataaataaaaaataaatcataaatctcgccgtacaccatttt
tcgagtgatttgcgCCTCGAAAGTTTCAACCACCTCTTTTTGTACGTACA
ATGTACTTAACGCTAAAAGAGTGATCGTGGGCGAAATATTGAAGGGGTTA
ATAGGGATAGAAAATCTCTTACTTTTAACCTTTTCTAgtgataatttttg
atattcatgacgtaatcttttatacggaagcacacaaaaAACATCGGGCG
TTCGCCACCAGtttcattgtttaaattcaaaactggtgACAAACGCCATG
TTGTTTTTCGGGtgttccgtataaaagattacgtcatgaatatcaagaat
agaATTCAGTTTAGTTGTCCAAAGAAGATGAAATTTCAGGTATTTTTTAT
GCAACATTTCGATCAACTATTACAGGATGTTAAATAggatttatttgatt
tttgacgCTAAAAAATTAGGCAAAAAGCAACCCAAGTCCCTTCGTACTAT
CAGCTTTTTGANATTTGATTTTTGACGCGAAAAAATTAGGCAAAAAGCAA
CCTAAGTCCCTTCGTactatcagctttttgatgaattgggcttttccaga
aaaaaaaattatccccactgttgaggatattgatttttcaaagtatcgaa
tcctactttattagtaaataCCCCCtagatatccactcttaaaaataagc
tcaaccccctggatatcctctcttagaagtatgcttacccctggatatcg
tattttttacttgaaaagacactttacccttGGATATccactcccttgta
gatatttaaccctcTGGGTATCCACTTTTGAATAAAACTGGCAGGAGGga
gcacggactatttctggaaaagccctttACCAATTGCGCTATATAATTCT
CTAGCGTTCATAAGTAACGTCTGGAACACAGGAGTGCGGTTTTTGAAGCA
TCTATCTTTATAAAAGCTGTTTTATATTTCAGGTGCCCAAACATGGCCGA
TGGAACGATCAGCATTCCCTATGAAAACGATCAAAAGCTATTCAAATGGG
AAAATGAAGCTTTCCGATTTTTCGGCGATTCTGACGCCGTTTACATAACG
TGTAACGTGAATGTTTGTAACAGTAATGACTATGGAGATGATTGCTTGAG
ATGTAACTCGATCAAAAGACGACGACGCCGACGTCGTGCCGTGTTTCATT
TCAACGAAGAGAAAATAAACACTAAACAGCAAAGAGTGATTGTATCAACT
CAAGTTTACAAattaatttgatgaaaatttgtagttgatgattttttttt
gatttttcaagtatAAAAGTTAATTGTGTGATTATCTAAAAGATTTCTTG
GTGTTCTTATCTATATGATAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037467XLOC_037467Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059525-exon-scaffold_329-1491911889:464182..464376TCONS_00059525-exon-scaffold_329-1491911889:464182..464376Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1510915933:464182..464376TCONS_00059525-exon-scaffold_329-1510915933:464182..464376Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1575043694:464182..464376TCONS_00059525-exon-scaffold_329-1575043694:464182..464376Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1491911889:464934..465314TCONS_00059525-exon-scaffold_329-1491911889:464934..465314Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1510915933:464934..465314TCONS_00059525-exon-scaffold_329-1510915933:464934..465314Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1575043694:464934..465314TCONS_00059525-exon-scaffold_329-1575043694:464934..465314Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1491911889:466018..466246TCONS_00059525-exon-scaffold_329-1491911889:466018..466246Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1510915933:466018..466246TCONS_00059525-exon-scaffold_329-1510915933:466018..466246Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1575043694:466018..466246TCONS_00059525-exon-scaffold_329-1575043694:466018..466246Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1491911889:467964..468355TCONS_00059525-exon-scaffold_329-1491911889:467964..468355Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1510915933:467964..468355TCONS_00059525-exon-scaffold_329-1510915933:467964..468355Clytia hemisphaericaexon
TCONS_00059525-exon-scaffold_329-1575043694:467964..468355TCONS_00059525-exon-scaffold_329-1575043694:467964..468355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:464182..468355 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316543	0.31416	0.56146	0.253385	0.200305	0.117632	0.429098	0.449466	2.18425	1.88887	6.40902	1.64017	10.3433	5.91785	1.30241	2.70085	4.10209	6.70151	0	0	76.4813	64.2368	71.3846	109.213	116.162	78.4187	6.52322	4.97948	2.25649	2.47705
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top