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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059182 ID=TCONS_00059182|Name=TCONS_00059182|organism=Clytia hemisphaerica|type=transcript|length=2849bp
cccccctgagaaaactcaatttaaaacagtttaaaattgaaataaggAGT
AGTTCTGTGTTTTAAATGGTGATGAATTGACGAGAAAAATATTGCACTAA
AATTCCATTATATTGCTGTATATTATTTAAATATAGATTATTAATCAAAC
AAAAAGCATTGCTTTACATAATACAAAAGCTAATGAAGTTCATATATATC
CATGAAAGCATGGAAGCCCAGAGAGAATCTCGACTTTCAACCTATGAAAC
ATCCCTCATGACACCATGCTATTGATAAACTTCTACCATTGATTTAATAT
CAGTCTATACAACCAAAATCATTCACATGAAACATCATTTGTAAGCTTCT
GGGTTCGACAAATTTCTGTCTAAAATAGATTTTGGTAATGTTGCTTTAAA
ACTTTCCAAATCATTATTAGCTTCACTTTCAGCCAGTTTTCTTGCGGTAC
GTAGTTCCAATGCACTTGGGTCTTGAATGCGTCCACGTTTTCGATCACTG
AATTGACCTTCAAGCATATAACCAACAGTACCAACACAAAGAGCTACAGG
AAAGACAAGGTAAGGAGCGTATGTCCTTGCTCCAGCCAAAATTATTGGCC
Acatcaagttttatttttaaatctaaaggttaaaaatgaaagatttatga
TTGCCCAAGTTCAAAGTATCAAAAGAACTCCTTTGCTACCTattgtttag
tttttttcatccatcaaggtgcctaataaacgtggGGGTACAAATAAacg
ttataaaaaaataaattttttcagaattttaataAATGGGTCTTAAGCGT
GGGGGTTGGAAATTAATAATTtgaatgaataatgaataatttttcgaaaa
tacccCTAATTATTGGAAGCAAGAAGATACACATATTTTGAGTGTAACAC
AACAATAAGACTAAATGTTTTAATACAAGTAAAAGATGAAAATGTAacaa
gaaaagaacaaaagttACTGTAACAAGCTCTCGTAAAATAAGTACAGTAC
TGTATTACATGAATCTAGCAGTCTATCTAAAAAATACTTGATaagaaatt
tctgaattttaataaactgggggtcctaataaggtccgtgGAGGTCGGAA
TgttgaaaaattaataagcgtgNTGGTccggggtcctaataaggtccgtg
taggttggaaaattttcgaaaaattaataagcgatGGGgcacgtttatta
ggcacctgagagtaataacaaaaattattaaaataccAAACAGGAAGAAA
TCAAATTTAAGGTTTAACGTTCAGTGTTCTTGTTCTTGATTGAGGTATTT
ATTGATCAAATCATGAAACTCAACAAGTTTAGGTATATTCATACCCACTT
GTTTTCCAATATCATCATATGTTCTCACTTTAATGCTTTCCTTGAAATAA
GGGTCCTTTTCAAAGTGGACCATTTGTTCCATTGACATACGCCCTCCTTG
AAATTCAAGCGTCTTTTTGGAAGCATCAGATAACTTGTCATAGTATTCGT
CATATTTGGATACTAAATACTTCTTTGCCAAGACATGGTTCTCAACCAGG
CAGCAGACTTTCTCTTCCATACCTAGCTTTCTTAAAAATCTAGCACCTAC
TGCTCCATGTTCAATGACGCCTAGCCCATTCATATTatctttgtcaagaa
aatgtcCTATATCATGAAGCAAACATGCCAGGACCACATAGTCTGGTTCA
TTGTTTTGTTGGGCAGCTGTTGCAGCTTGAATCATGTGAGTTGTCTTAGA
AACACATTCTCCAAAGTACTCCTGGTCACCAAAATCTTTATAAAGTGCTA
ATATATTTTCCATCCTAAAGTGGTATAAGTATTTTAAGAGCATTGGTCTT
GTCACTGAATGACAAGCCCTTACCCATGAAATGTTTAAAAGATCCAAATA
ATGTCAAACCAATGTCAATTGATTAACAAACCTGGTCTTGGTATAGCAGA
CTCTGACTCTTTTCTGCTGCTACAGTAGACCGTTATTCAAAGATCCAAGg
gggataagaatttacttcaAATAACCGGGAGTTCAAATAACTGAAAATTG
TTTTCCTGCAAGATTCCAGGGCCTGAAATAATGGTCAGACATAGGACATT
GTCGGACCCACCCAATGAAATGTCCGACCAAAATAGATTCTGATTGGACA
TTATGTCCAACCCATATTTTCAGTTCAGATTTAGTTGCATCAGGAAAGAT
TAGAATGGCTGAATAAATTTGAGTTTTCTTAGCCAATGATAATACAAACA
CAGAAAACTTTGGTAGGTATCTGGCTAGGTCTTTCAAATTTGTTGCTGAG
GCCATAGCCAtaataaaaatcagaaaaattggtTTCAGCAGATGTGGTAA
AATCCAGTTGGATTTCAACTAAATCTTAAGCAAGCTGCCTGTTACCAAAC
TAACCAGAACTAACATATAAATTTCATCCACAAAATAAGGAAAAGACCTA
TTGTCTTTACCCATTTCAACTTGACTTTTCATTTTTGCATATTGTTTCTG
AGACTTTTTTCTGATCCCCTGGTGACAacttttttaccttattttctGAC
TATTTTGAAGTGCTTCAACTTACCTAGTGAAATTGTCTTAAAAAgacaaa
tgtttgggaaatcaaaaagataacttttgtaaggatgttgagttttgttt
atatggcactTTATATGGCTCTTCCAGTTAAAGTCTGTTACAGTGGGTGG
ACGACGGCAGAATTCTgaggcaaaatgtttttttgaaattcctggatttc
taatacaaaatcaattttttggtggaaaaatctggaatttccgatacttt
ttcaaaattttgacaaattatgtggaatttccaagggttcaaataaaaa Run BLAST on NCBI transcript from alignment at scaffold_319:60605..63495- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059182 ID=TCONS_00059182|Name=TCONS_00059182|organism=Clytia hemisphaerica|type=transcript|length=2891bp|location=Sequence derived from alignment at scaffold_319:60605..63495- (Clytia hemisphaerica)
CCCCCCTGAGAAAACTCAATTTAAAACAGTTTAAAATTGAAATAAGGAGT
AGTTCTGTGTTTTAAATGGTGATGAATTGACGAGAAAAATATTGCACTAA
AATTCCATTATATTGCTGTATATTATTTAAATATAGATTATTAATCAAAC
AAAAAGCATTGCTTTACATAATACAAAAGCTAATGAAGTTCATATATATC
CATGAAAGCATGGAAGCCCAGAGAGAATCTCGACTTTCAACCTATGAAAC
ATCCCTCATGACACCATGCTATTGATAAACTTCTACCATTGATTTAATAT
CAGTCTATACAACCAAAATCATTCACATGAAACATCATTTGTAAGCTTCT
GGGTTCGACAAATTTCTGTCTAAAATAGATTTTGGTAATGTTGCTTTAAA
ACTTTCCAAATCATTATTAGCTTCACTTTCAGCCAGTTTTCTTGCGGTAC
GTAGTTCCAATGCACTTGGGTCTTGAATGCGTCCACGTTTTCGATCACTG
AATTGACCTTCAAGCATATAACCAACAGTACCAACACAAAGAGCTACAGG
AAAGACAAGGTAAGGAGCGTATGTCCTTGCTCCAGCCAAAATTATTGGCC
ACATCAAGTTTTATTTTTAAATCTAAAGGTTAAAAATGAAAGATTTATGA
TTGCCCAAGTTCAAAGTATCAAAAGAACTCCTTTGCTACCTATTGTTTAG
TTTTTTTCATCCATCAAGGTGCCTAATAAACGTGGGGGTACAAATAAACG
TTATAAAAAAATAAATTTTTTCAGAATTTTAATAAATGGGTCTTAAGCGT
GGGGGTTGGAAATTAATAATTTGAATGAATAATGAATAATTTTTCGAAAA
TACCCCTAATTATTGGAAGCAAGAAGATACACATATTTTGAGTGTAACAC
AACAATAAGACTAAATGTTTTAATACAAGTAAAAGATGAAAATGTAACAA
GAAAAGAACAAAAGTTACTGTAACAAGCTCTCGTAAAATAAGTACAGTAC
TGTATTACATGAATCTAGCAGTCTATCTAAAAAATACTTGATAAGAAATT
TCTGAATTTTAATAAACTGGGGGTCCTAATAAGGTCCGTGGAGGTCGGAA
TGTTGAAAAATTAATAAGCGTGNTGGTCCGGGGTCCTAATAAGGTCCGTG
TAGGTTGGAAAATTTTCGAAAAATTAATAAGCGATGGGGCACGTTTATTA
GGCACCTGAGAGTAATAACAAAAATTATTAAAATACCAAACAGGAAGAAA
TCAAATTTAAGGTTTAACGTTCAGTGTTCTTGTTCTTGATTGAGGTATTT
ATTGATCAAATCATGAAACTCAACAAGTTTAGGTATATTCATACCCACTT
GTTTTCCAATATCATCATATGTTCTCACTTTAATGCTTTCCTTGAAATAA
GGGTCCTTTTCAAAGTGGACCATTTGTTCCATTGACATACGCCCTCCTTG
AAATTCAAGCGTCTTTTTGGAAGCATCAGATAACTTGTCATAGTATTCGT
CATATTTGGATACTAAATACTTCTTTGCCAAGACATGGTTCTCAACCAGG
CAGCAGACTTTCTCTTCCATACCTAGCTTTCTTAAAAATCTAGCACCTAC
TGCTCCATGTTCAATGACGCCTAGCCCATTCATATTATCTTTGTCAAGAA
AATGTCCTATATCATGAAGCAAACATGCCAGGACCACATAGTCTGGTTCA
TTGTTTTGTTGGGCAGCTGTTGCAGCTTGAATCATGTGAGTTGTCTTAGA
AACACATTCTCCAAAGTACTCCTGGTCACCAAAATCTTTATAAAGTGCTA
ATATATTTTCCATCCTAAAGTGGTATAAGTATTTTAAGAGCATTGGTCTT
GTCACTGAATGACAAGCCCTTACCCATGAAATGTTTAAAAGATCCAAATA
ATGTCAAACCAATGTCAATTGATTAACAAACCTGGTCTTGGTATAGCAGA
CTCTGACTCTTTTCTGCTGCTACAGTAGACCGTTATTCAAAGATCCAAGG
GGGATAAGAATTTACTTCAAATAACCGGGAGTTCAAATAACTGAAAATTG
TTTTCCTGCAAGATTCCAGGGCCTGAAATAATGGTCAGACATAGGACAAT
GAAATGTCCGANGCCTGAAATAATGGTCAAACATAGGACATTGTCGGACC
CACCCAATGAAATGTCCGACCAAAATAGATTCTGATTGGACATTATGTCC
AACCCATATTTTCAGTTCAGATTTAGTTGCATCAGGAAAGATTAGAATGG
CTGAATAAATTTGAGTTTTCTTAGCCAATGATAATACAAACACAGAAAAC
TTTGGTAGGTATCTGGCTAGGTCTTTCAAATTTGTTGCTGAGGCCATAGC
CATAATAAAAATCAGAAAAATTGGTTTCAGCAGATGTGGTAAAATCCAGT
TGGATTTCAACTAAATCTTAAGCAAGCTGCCTGTTACCAAACTAACCAGA
ACTAACATATAAATTTCATCCACAAAATAAGGAAAAGACCTATTGTCTTT
ACCCATTTCAACTTGACTTTTCATTTTTGCATATTGTTTCTGAGACTTTT
TTCTGATCCCCTGGTGACAACTTTTTTACCTTATTTTCTGACTATTTTGA
AGTGCTTCAACTTACCTAGTGAAATTGTCTTAAAAAGACAAATGTTTGGG
AAATCAAAAAGATAACTTTTGTAAGGATGTTGAGTTTTGTTTATATGGCA
CTTTATATGGCTCTTCCAGTTAAAGTCTGTTACAGTGGGTGGACGACGGC
AGAATTCTGAGGCAAAATGTTTTTTTGAAATTCCTGGATTTCTAATACAA
AATCAATTTTTTGGTGGAAAAATCTGGAATTTCCGATACTTTTTCAAAAT
TTTGACAAATTATGTGGAATTTCCAAGGGTTCAAATAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059182-exon-scaffold_319-1575043694:61406..63495 | TCONS_00059182-exon-scaffold_319-1575043694:61406..63495 | Clytia hemisphaerica | exon |
| TCONS_00059182-exon-scaffold_319-1575043694:60605..61363 | TCONS_00059182-exon-scaffold_319-1575043694:60605..61363 | Clytia hemisphaerica | exon |
| TCONS_00059182-exon-scaffold_319-1510915933:61406..63495 | TCONS_00059182-exon-scaffold_319-1510915933:61406..63495 | Clytia hemisphaerica | exon |
| TCONS_00059182-exon-scaffold_319-1510915933:60605..61363 | TCONS_00059182-exon-scaffold_319-1510915933:60605..61363 | Clytia hemisphaerica | exon |
| TCONS_00059182-exon-scaffold_319-1491911889:61406..63495 | TCONS_00059182-exon-scaffold_319-1491911889:61406..63495 | Clytia hemisphaerica | exon |
| TCONS_00059182-exon-scaffold_319-1491911889:60605..61363 | TCONS_00059182-exon-scaffold_319-1491911889:60605..61363 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_319 | supercontig | scaffold_319:60605..63495 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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