TCONS_00059208 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059208
Unique NameTCONS_00059208
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length243

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059208 ID=TCONS_00059208|Name=TCONS_00059208|organism=Clytia hemisphaerica|type=transcript|length=243bp
aggctTATGTTTTACTTAGGtaatctgcaaatctgagccttcatattctt
ataaaaaatatgtattttaaaaacatgtatttattttacaaaaatataaa
tcgCAGTCTTCTAAACTTTGGGAGTAAAAAGCAGCATTTCGTTAGAGAAT
GCCTGCCGTCAACTTTATACACCCGACGATTCGAAGCGTAAATAACACCG
AATTCCGAAAATCCCTATTTCGGTAaatgattttcttcaaaat
Run BLAST on NCBI

transcript from alignment at scaffold_319:113686..113928

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059208 ID=TCONS_00059208|Name=TCONS_00059208|organism=Clytia hemisphaerica|type=transcript|length=243bp|location=Sequence derived from alignment at scaffold_319:113686..113928 (Clytia hemisphaerica)
attttgaagaaaatcattTACCGAAATAGGGATTTTCGGAATTCGGTGTT
ATTTACGCTTCGAATCGTCGGGTGTATAAAGTTGACGGCAGGCATTCTCT
AACGAAATGCTGCTTTTTACTCCCAAAGTTTAGAAGACTGcgatttatat
ttttgtaaaataaatacatgtttttaaaatacatattttttataagaata
tgaaggctcagatttgcagattaCCTAAGTAAAACATAagcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037285XLOC_037285Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059208-exon-scaffold_319-1491911889:113686..113928TCONS_00059208-exon-scaffold_319-1491911889:113686..113928Clytia hemisphaericaexon
TCONS_00059208-exon-scaffold_319-1510915933:113686..113928TCONS_00059208-exon-scaffold_319-1510915933:113686..113928Clytia hemisphaericaexon
TCONS_00059208-exon-scaffold_319-1575043694:113686..113928TCONS_00059208-exon-scaffold_319-1575043694:113686..113928Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:113686..113928 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.835822	0	0	0	0	0	1.03164	0.722274	1.78931	0	1.14167	0.57004	5.32793	4.38028	1.0446	0.643433	1.319	1.82226	0	0.828707	0	3.931	3.57385	0.920246	2.46389	9.4022	5.01714	1.90266	2.90777
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059208 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top