TCONS_00059166 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00059166
Unique Name	TCONS_00059166
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1586

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_319:184084..188745+
coding sequence from alignment at scaffold_319:184084..188745+

transcript sequence

>TCONS_00059166 ID=TCONS_00059166|Name=TCONS_00059166|organism=Clytia hemisphaerica|type=transcript|length=1586bp
ataaGAATCCGTAAATATACCAGTCAGAGAAAGGTCCCATTCCGAAGAAT
TAAAAAATCAGACTTCTGCGTTAACACGCATGctaaatttgtcgttcttt
aagaccacatgtagttaattaaAGCTAAAAATTAAAACTGTCTTATTCTC
TCTTagaatttataaaaatgaaaaggttATGAGAATTTATATAGAGAGAA
AATCTTAAATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTA
AGGCAGGATTATATGCGCATTAAGAAAGATCCTGTTCCATACATAATTGG
AGCAGAACCTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCAAAG
GTCCAGAGAATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTAGtt
tttccaaaagattttcCTTTCAAACCTCCAAAGATTATGATGATGACACC
AAATGGAAGATTCAAAACACACACACGGTTATGTTTATCAATAAGTGACT
TTCACCCAGACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACA
GGACTACTGAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTATAGA
AACAACCGACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAATACA
ATTTGAAAGATAAAACATTCACTGAACTTTTTCCTGATATATGCAAAGAA
ATCAAAGAGCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGAAGG
GACTGCAAATAATGGGGAATTTTTATTACCAAAcgatttaaattctgaaa
atgataattttgtaAATGGAAGTACTTTTGCAAACATATGTGTTTTTGTT
GGCTTTGCTGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTAC
TTCTGAAGATGAATTATGAGAACAACTTGGTTAAAAGGGTTGTTGTTTTT
AAATATCTTGAATTTTATcaaactttatttatttttcaaaaatcattgtt
tcccttaattaaaatgattttgattcaCTAAGAATCACAGAAAAGTGAAA
TGACTTTGCCATTTTCTTATTAAGTTTTAAAATTAGCATGATACAGATTT
ATGTCAATTTTTGTTCACCATGTAGATTGTTGTCTAAGAACAAGATATAC
AGCCATGTACCCTCTTTGACAAAACTGCACTAGAGGTTTACTAAATAGAC
CCCTAGATCAATTCAATTTAATGAAACTTTCTGGTGTAGATGCTTCATCA
AAAAGTCGAGGACTTCATGGTTGCATTTTGTGAAATTACGCAGAAAAGTC
TTTGCGAAATCGTTTTCTCTGTATGTAATTTATCATTCTCAACTGTAAAC
ATACCTTATTAATTGAGTTGGAGGGACAAAGATTTtgtaacaattttatt
tttgtactGTGCTTTGTGTAGCTTTTACGAATGGATAGtaacaaatatat
atgtatttGTAAATTTGTATAATTAAAGAATACAATATCATGTGGTCAGA
TCTCTTTTTACTGGTGCTTTTAATAGTATTTATTAATATAAGCTGGAAAT
TACATTCTTTTAAAGAACAAAACAGATGAATTTCaa

Run BLAST on NCBI

protein sequence of TCONS_00059166-protein

>TCONS_00059166-protein ID=TCONS_00059166-protein|Name=TCONS_00059166-protein|organism=Clytia hemisphaerica|type=polypeptide|length=236bp
MASKRANATASTRLRQDYMRIKKDPVPYIIGAEPLPSNILEWHYVIKGPE
NSLYEGGYYHGKLVFPKDFPFKPPKIMMMTPNGRFKTHTRLCLSISDFHP
DTWNPAWSVSTILTGLLSFMLEKAPTLGSIETTDYQKKQFALNSLEYNLK
DKTFTELFPDICKEIKELLDNQRDQNDPNEGTANNGEFLLPNDLNSENDN
FVNGSTFANICVFVGFAVFALVVNYVIKAVTSEDEL

Run BLAST on NCBI

transcript from alignment at scaffold_319:184084..188745+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00059166 ID=TCONS_00059166|Name=TCONS_00059166|organism=Clytia hemisphaerica|type=transcript|length=4662bp|location=Sequence derived from alignment at scaffold_319:184084..188745+ (Clytia hemisphaerica)
ataaGAATCCGTAAATATACCAGTCAGAGAAAGGTCCCATTCCGAAGAAT
TAAAAAATCAGACTTCTGCGTTAACACGCATGctaaatttgtcgttcttt
aagaccacatgtagttaattaaAGCTAAAAATTAAAACTGTCTTATTCTC
TCTTagaatttataaaaatgaaaaggttATGAGAATTTATATAGAGAGAA
AATCTTAAATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTA
AGGCAGGATTATATGCGCATTAAGAAAGATCCTGTTCCATACATAATTGG
AGCAGAACCTTTGCCTTCAAATATCCTGGAATGgtaagttgtatttttta
tttatttttttggctgtttTACAGTTGTCTTCagaattgaaagccaaaat
gtAATGTTTTAAGTTGCTTTTAATAGTTCTTCTTTGTACATTGTACATGT
CATATGATATTTATTGTGCTGGAAAGCTGGAATGGCTGCaatgtttcatt
ttgaatatattcAAGTTATTTTTCTGTCCAATCCAATGGCATAAAGTGga
ctttgaaatgaaaataagttaaccatttttttttaattgaatatttttac
aGGATAGAGCAGACAGTTACAAATAACTGATATTACTATATTGGTCCTGA
CTTAAAATAAACTAATAAATTTATGATAATAAATGACTCTTTACCCCAGG
CTATAAATAATGCCAAAACACACACAAATTGCCAAATTAACTTGAAATCA
TTCATGAAAAGCTGAATTTAGACTGGTAAAAAATTGTTGACAATTTCATT
GAAgactgtttttttaatgaaGTTTTGGACGTGAAGCaaaaatatagttt
ttttcATATTCTAATCGTATGTTAAATAAAGTAGAGTAAAAATGGTGCTT
TTAGGTTGTGAatgcaaaattatcaaaatggaCTTTATTATACTAGTCCT
TTTAAAACGGTATTTATTTCTGAAAAAGGCATAAAAATCGGGGCCAATAA
GGGCTGGTGCGCACTGATTAGTTATATGacaaaacttttattataaTTCT
ACATCTAGGCATTATGTAATCAAAGGTCCAGAGAATTCGCTCTATGAAGG
TGGGTATTACCATGGCAAATTAGtttttccaaaagattttcCTTTCAAAC
CTCCAAAGATTATGATGATGACACCAAATGGAAGATTCAAAACACACACA
CGGTGAGACACGCTTTAATATTATGCAGCTAATTCTTGGTAAAATCAGTG
AGCATTCTTCTGTTACCATTTTTCAGAATACTGAAAAACTCTTCTCTCAA
GTTGTTGGTATGGATATTTATatccaaaaattttcattactgGAAGTAAC
TCTTTTTTTTATCAGGTTATGTTTATCAATAAGTGACTTTCACCCAGACA
CTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGACTACTGAGT
TTTATGGTATCATATTATCcgtatttaaaaattttgagattaaCTCTGtt
gtgttaatttttttcaagaatgcaaaaaaatgtatttatttAAACAATGT
TGCTTTACTCTTAAAGGAGAGATGTTctaagattttgtttttttaagaaa
atatgcAATGTTTATTATTCTTTTGTACACttattttagctcgagaaagc
CCCCACACTAGGGAGTATAGAAACAACCGACTATCAGGTAAAACTTTAGC
TTCATTTATATTGCACTCCCTTTCATCTCAATGTAAATACCTCATTTTCT
TCTCTTTAAAACAGGCTGTAGtaaatattttgatgatttttatattttag
aaaaaacaatttgCATTGAACAGTTTGGAATACAATTTGAAAGATAAAAC
ATTCACTGAACTTTTTCCTGATATATGCAAAGTAAGCACGTTTCGTTTCA
TTATATTACTCTGTTCCTGTCTCCTCTAGGTtatgtcatatcttccttcg
tttcgagcttaaaactcctactcttcgagtgagacctaaaagcctggagc
tgtataTTATGTAGACTAGTCTCCTctaattgtttgaaaaatattcattt
tgttCACACTGGTACaggggggtcagtgtaccagagcagaaggtggcatg
tatcctggggtgggtgggtgtttgagaaaaaatttgtcatgtactacctg
tgtactataattggggtgttgggtccaaaatcgaagTTTAAAAAGtgtgg
aaacaaaaaggttcagaaattatctgctaaaatagaaatgtaaagttgtt
ctattataaattaatcaagccaagtttgttcaagatcattcttccaaact
tcTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTAAGC
ACGTTTCGTTTCATTATATTACTCTGTTCCTGTCTCCTCTAGGTtatgtc
atatcttccttcgtttcgagcttaaaactcctactcttcgagtgagacct
aaaagcctggagctgtataTTATGTAGACTAGTCTCCTctaattgtttga
aaaatattcattttgttCACACTGGTACaggggggtcagtgtaccagagc
agaaggtggcatgtatcctggggtgggtgggtgtttgagaaaaaatttgt
catgtactacctgtgtactataattggggtgttgggtccaaaatcgatgt
taACAGTATGGAAACAAAAGGTTCAGAAATAATtatctgctaaaatagaa
atgtaaagttgttctaattataaattgatcaagccaagtttgtccaagat
cattcttccagacttcttggaatgaattgaaatcctacCAGATTCCATTA
AATGAAGGCTTATGTAAAcatgtaaacattcgaacatttgaATTCAAAGA
TTCGAACATtcgaggtgccaactctcacgcattgggtgtgagactcacac
atttccacatggtctcacgcaatttttgaaaagtttgatttctcacgcat
tttggatttttgagaaaaatgttcctgtttttccgatttttggaaaaaag
ttttcccgatttcccgatttttgtaaaaatgtttactcgattttctaatt
ttttccagGTAGTACCCGGTAGTAAATGGGGGAGTATAATGAggtggttt
tggtttttttccaggtactacccggtagtaaataaggggtatggggtggt
tttgggatttttccattggtgtacttcaggggtgggtgggtttcaagttt
tgaaaaataccttatagtacacatacatgccgccttctagtacactgacc
cccccccctgactGGTATTTTATTATAACAGAATACTAATTAGAAATATG
Ccttaaaaaaatttgggttattattatattaattttcactgaaattttaa
ggttttttctttAAGTGTGTATACCTTGCTTTCTTTACTGTTTGTTAACT
TTATTCTTTGGTGACAAAAATAGGAAATCAAAGAGCTGCTGGATAATCAG
AGAGATCAAAATGATCCCAACGAAGGGACTGCAAATAATGGGGAATTTTT
ATTACCAAAcgatttaaattctgaaaatgataattttgtaAATGGAAGTA
CTTTTGCAAACATATGTGTTTTTGTTGGCTTTGCTGTGTTTGCGCTGGTC
GTCAATTACGTCATCAAAGCTGTTACTTCTGAAGATGAATTATGAGAACA
ACTTGGTTAAAAGGGTTGTTGTTTTTAAATATCTTGAATTTTATcaaact
ttatttatttttcaaaaatcattgtttcccttaattaaaatgattttgat
tcaCTAAGAATCACAGAAAAGTGAAATGACTTTGCCATTTTCTTATTAAG
TTTTAAAATTAGCATGATACAGATTTATGTCAATTTTTGTTCACCATGTA
GATTGTTGTCTAAGAACAAGATATACAGCCATGTACCCTCTTTGACAAAA
CTGCACTAGAGGTTTACTAAATAGACCCCTAGATCAATTCAATTTAATGA
AACTTTCTGGTGTAGATGCTTCATCAAAAAGTCGAGGACTTCATGGTTGC
ATTTTGTGAAATTACGCAGAAAAGTCTTTGCGAAATCGTTTTCTCTGTAT
GTAATTTATCATTCTCAACTGTAAACATACCTTATTAATTGAGTTGGAGG
GACAAAGATTTtgtaacaattttatttttgtactGTGCTTTGTGTAGCTT
TTACGAATGGATAGtaacaaatatatatgtatttGTAAATTTGTATAATT
AAAGAATACAATATCATGTGGTCAGATCTCTTTTTACTGGTGCTTTTAAT
AGTATTTATTAATATAAGCTGGAAATTACATTCTTTTAAAGAACAAAACA
GATGAATTTCaa

Coding sequence (CDS) from alignment at scaffold_319:184084..188745+

>TCONS_00059166 ID=TCONS_00059166|Name=TCONS_00059166|organism=Clytia hemisphaerica|type=CDS|length=4266bp|location=Sequence derived from alignment at scaffold_319:184084..188745+ (Clytia hemisphaerica)
ATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTAAGGCAGGA
TTATATGCGCATTAAGAAAGATCCTGTTCCATACATAATTGGAGCAGAAC
CTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCAAAGGTCCAGAG
AATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTAGtttttccaaa
agattttcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAATGGAA
GATTCAAAACACACACACGGTTATGTTTATCAATAAGTGACTTTCACCCA
GACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGACTACT
GAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTATAGAAACAACCG
ACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAATACAATTTGAAA
GATAAAACATTCACTGAACTTTTTCCTGATATATGCAAAGAAATCAAAGA
GCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGAAGGGACTGCAA
ATAATGGGGAATTTTTATTACCAAAcgatttaaattctgaaaatgataat
tttgtaAATGGAAGTACTTTTGCAAACATATGTGTTTTTGTTGGCTTTGC
TGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTACTTCTGAAG
ATGAATTATGAATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGG
CTAAGGCAGGATTATATGCGCATTAAGAAAGATCCTGTTCCATACATAAT
TGGAGCAGAACCTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCA
AAGGTCCAGAGAATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTA
GtttttccaaaagattttcCTTTCAAACCTCCAAAGATTATGATGATGAC
ACCAAATGGAAGATTCAAAACACACACACGGTTATGTTTATCAATAAGTG
ACTTTCACCCAGACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTT
ACAGGACTACTGAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTAT
AGAAACAACCGACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAAT
ACAATTTGAAAGATAAAACATTCACTGAACTTTTTCCTGATATATGCAAA
GAAATCAAAGAGCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGA
AGGGACTGCAAATAATGGGGAATTTTTATTACCAAAcgatttaaattctg
aaaatgataattttgtaAATGGAAGTACTTTTGCAAACATATGTGTTTTT
GTTGGCTTTGCTGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGT
TACTTCTGAAGATGAATTATGAATGGCTTCTAAAAGAGCTAATGCAACTG
CTTCTACAAGGCTAAGGCAGGATTATATGCGCATTAAGAAAGATCCTGTT
CCATACATAATTGGAGCAGAACCTTTGCCTTCAAATATCCTGGAATGGCA
TTATGTAATCAAAGGTCCAGAGAATTCGCTCTATGAAGGTGGGTATTACC
ATGGCAAATTAGtttttccaaaagattttcCTTTCAAACCTCCAAAGATT
ATGATGATGACACCAAATGGAAGATTCAAAACACACACACGGTTATGTTT
ATCAATAAGTGACTTTCACCCAGACACTTGGAATCCTGCTTGGTCTGTTT
CAACGATACTTACAGGACTACTGAGTTTTATGctcgagaaagcCCCCACA
CTAGGGAGTATAGAAACAACCGACTATCAGaaaaaacaatttgCATTGAA
CAGTTTGGAATACAATTTGAAAGATAAAACATTCACTGAACTTTTTCCTG
ATATATGCAAAGAAATCAAAGAGCTGCTGGATAATCAGAGAGATCAAAAT
GATCCCAACGAAGGGACTGCAAATAATGGGGAATTTTTATTACCAAAcga
tttaaattctgaaaatgataattttgtaAATGGAAGTACTTTTGCAAACA
TATGTGTTTTTGTTGGCTTTGCTGTGTTTGCGCTGGTCGTCAATTACGTC
ATCAAAGCTGTTACTTCTGAAGATGAATTATGAATGGCTTCTAAAAGAGC
TAATGCAACTGCTTCTACAAGGCTAAGGCAGGATTATATGCGCATTAAGA
AAGATCCTGTTCCATACATAATTGGAGCAGAACCTTTGCCTTCAAATATC
CTGGAATGGCATTATGTAATCAAAGGTCCAGAGAATTCGCTCTATGAAGG
TGGGTATTACCATGGCAAATTAGtttttccaaaagattttcCTTTCAAAC
CTCCAAAGATTATGATGATGACACCAAATGGAAGATTCAAAACACACACA
CGGTTATGTTTATCAATAAGTGACTTTCACCCAGACACTTGGAATCCTGC
TTGGTCTGTTTCAACGATACTTACAGGACTACTGAGTTTTATGctcgaga
aagcCCCCACACTAGGGAGTATAGAAACAACCGACTATCAGaaaaaacaa
tttgCATTGAACAGTTTGGAATACAATTTGAAAGATAAAACATTCACTGA
ACTTTTTCCTGATATATGCAAAGAAATCAAAGAGCTGCTGGATAATCAGA
GAGATCAAAATGATCCCAACGAAGGGACTGCAAATAATGGGGAATTTTTA
TTACCAAAcgatttaaattctgaaaatgataattttgtaAATGGAAGTAC
TTTTGCAAACATATGTGTTTTTGTTGGCTTTGCTGTGTTTGCGCTGGTCG
TCAATTACGTCATCAAAGCTGTTACTTCTGAAGATGAATTATGAATGGCT
TCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTAAGGCAGGATTATAT
GCGCATTAAGAAAGATCCTGTTCCATACATAATTGGAGCAGAACCTTTGC
CTTCAAATATCCTGGAATGGCATTATGTAATCAAAGGTCCAGAGAATTCG
CTCTATGAAGGTGGGTATTACCATGGCAAATTAGtttttccaaaagattt
tcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAATGGAAGATTCA
AAACACACACACGGTTATGTTTATCAATAAGTGACTTTCACCCAGACACT
TGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGACTACTGAGTTT
TATGctcgagaaagcCCCCACACTAGGGAGTATAGAAACAACCGACTATC
AGaaaaaacaatttgCATTGAACAGTTTGGAATACAATTTGAAAGATAAA
ACATTCACTGAACTTTTTCCTGATATATGCAAAGAAATCAAAGAGCTGCT
GGATAATCAGAGAGATCAAAATGATCCCAACGAAGGGACTGCAAATAATG
GGGAATTTTTATTACCAAAcgatttaaattctgaaaatgataattttgta
AATGGAAGTACTTTTGCAAACATATGTGTTTTTGTTGGCTTTGCTGTGTT
TGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTACTTCTGAAGATGAAT
TATGAATGGCTTCTAAAAGAGCTAATGCAACTGCTTCTACAAGGCTAAGG
CAGGATTATATGCGCATTAAGAAAGATCCTGTTCCATACATAATTGGAGC
AGAACCTTTGCCTTCAAATATCCTGGAATGGCATTATGTAATCAAAGGTC
CAGAGAATTCGCTCTATGAAGGTGGGTATTACCATGGCAAATTAGttttt
ccaaaagattttcCTTTCAAACCTCCAAAGATTATGATGATGACACCAAA
TGGAAGATTCAAAACACACACACGGTTATGTTTATCAATAAGTGACTTTC
ACCCAGACACTTGGAATCCTGCTTGGTCTGTTTCAACGATACTTACAGGA
CTACTGAGTTTTATGctcgagaaagcCCCCACACTAGGGAGTATAGAAAC
AACCGACTATCAGaaaaaacaatttgCATTGAACAGTTTGGAATACAATT
TGAAAGATAAAACATTCACTGAACTTTTTCCTGATATATGCAAAGAAATC
AAAGAGCTGCTGGATAATCAGAGAGATCAAAATGATCCCAACGAAGGGAC
TGCAAATAATGGGGAATTTTTATTACCAAAcgatttaaattctgaaaatg
ataattttgtaAATGGAAGTACTTTTGCAAACATATGTGTTTTTGTTGGC
TTTGCTGTGTTTGCGCTGGTCGTCAATTACGTCATCAAAGCTGTTACTTC
TGAAGATGAATTATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037263	XLOC_037263	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00059166-protein	TCONS_00059166-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_319	supercontig	scaffold_319:184084..188745 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
73.2743	72.66	32.6434	26.7707	34.5017	24.8476	30.3419	30.4214	34.9551	31.895	28.0606	30.0798	21.6246	22.8132	20.1747	21.8546	24.9503	26.6438	23.3074	25.0487	31.1133	31.4212	59.8207	54.4126	27.8005	29.0576	37.4833	28.2775	37.7475	41.1683

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR016135	UBQ-conjugating_enzyme/RWD
IPR000608	UBQ-conjugat_E2

Blast

[Close]

BLAST of TCONS_00059166 vs. Swiss-Prot (Human)
Match: UB2J2 (Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens GN=UBE2J2 PE=1 SV=3)

HSP 1 Score: 244.202 bits (622), Expect = 4.253e-76
Identity = 131/191 (68.59%), Postives = 155/191 (81.15%), Query Frame = 2

Query:  212 ASKRANATASTRLRQDYMRIKKDPVPYIIGAEPLPSNILEWHYVIKGPENSLYEGGYYHGKLVXXXXXXXXXXXXXXXXXNGRFKTHTRLCLSISDFHPDTWNPAWSVSTILTGLLSFMLEKAPTLGSIETTDYQKKQFALNSLEYNLKDKTFTELFPDICKEIKELLDNQ-----RDQNDPNEGTANNGE 769
            +SKRA  TA+ RL+QDY+RIKKDPVPYI  AEPLPSNILEWHYV++GPE + YEGGYYHGKL+FP++FPFKPP I M+TPNGRFK +TRLCLSI+DFHPDTWNPAWSVSTILTGLLSFM+EK PTLGSIET+D+ K+Q A+ SL +NLKDK F ELFP++ +EIK+    Q     R Q  P      +GE
Sbjct:    5 SSKRAPTTATQRLKQDYLRIKKDPVPYIC-AEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVVEEIKQKQKAQDELSSRPQTLPLPDVVPDGE 194

The following BLAST results are available for this feature:

BLAST of TCONS_00059166 vs. Swiss-Prot (Human)

BLAST of TCONS_00059166 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
UB2J2	4.253e-76	68.59	Ubiquitin-conjugating enzyme E2 J2 OS=Homo sapiens...	[more]

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TCONS_00059166 (transcript) - C. hemisphaerica