TCONS_00059212 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059212
Unique NameTCONS_00059212
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length581

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059212 ID=TCONS_00059212|Name=TCONS_00059212|organism=Clytia hemisphaerica|type=transcript|length=581bp
CTTGGATTTTCCTCATATTAGGTTCAATATTATGCAACATTTTCCATTTA
TGGGTAGTCTACACGCTTGGatatttcattttagtttgCTTAGCTGTCAT
ATTCTTTGTAGTGGCATACACGCATATCTACCTTACCGTAAGCAAGATCC
AAAGACGTGTTAGTTGTGTCAGCGTGGCTTCAATGCGATCACAAGGTGCT
GGGAGTAAGGAGCGAACCATCATTATGAGTCTACTAATAGTACTATTCTT
TGTAATATCTTTCCTACCGAGTGGATTGTATTATTTTTTCGCGACAACCG
ATTACGCTTCTAGTGTATTTAGGACATATATGTTTCCTTGGACTTATTCC
ATCCGTTTATCCAGTTCATTCGTCAACTCATTCATCTATTACTGGAGGTT
AGGAAATATAAGAAAAGCAAcgattgaaattttatttccctGTTGTTTAC
CGCCTGTTGATAACAAAGCGAAAAGAGAGTCCTATCTCAGGAAAGTTTCC
ATTTTCAACCGGCCGGTGATGGGAGATGAAGGAAATCCAATGGACACACT
CCAACGAATGAGGATGGATCAACAAACTTCT
Run BLAST on NCBI

protein sequence of TCONS_00059212-protein

>TCONS_00059212-protein ID=TCONS_00059212-protein|Name=TCONS_00059212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
WIFLILGSILCNIFHLWVVYTLGYFILVCLAVIFFVVAYTHIYLTVSKIQ
RRVSCVSVASMRSQGAGSKERTIIMSLLIVLFFVISFLPSGLYYFFATTD
YASSVFRTYMFPWTYSIRLSSSFVNSFIYYWRLGNIRKATIEILFPCCLP
PVDNKAKRESYLRKVSIFNRPVMGDEGNPMDTLQRMRMDQQTS
Run BLAST on NCBI

transcript from alignment at scaffold_319:229827..230407

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059212 ID=TCONS_00059212|Name=TCONS_00059212|organism=Clytia hemisphaerica|type=transcript|length=581bp|location=Sequence derived from alignment at scaffold_319:229827..230407 (Clytia hemisphaerica)
AGAAGTTTGTTGATCCATCCTCATTCGTTGGAGTGTGTCCATTGGATTTC
CTTCATCTCCCATCACCGGCCGGTTGAAAATGGAAACTTTCCTGAGATAG
GACTCTCTTTTCGCTTTGTTATCAACAGGCGGTAAACAACagggaaataa
aatttcaatcgTTGCTTTTCTTATATTTCCTAACCTCCAGTAATAGATGA
ATGAGTTGACGAATGAACTGGATAAACGGATGGAATAAGTCCAAGGAAAC
ATATATGTCCTAAATACACTAGAAGCGTAATCGGTTGTCGCGAAAAAATA
ATACAATCCACTCGGTAGGAAAGATATTACAAAGAATAGTACTATTAGTA
GACTCATAATGATGGTTCGCTCCTTACTCCCAGCACCTTGTGATCGCATT
GAAGCCACGCTGACACAACTAACACGTCTTTGGATCTTGCTTACGGTAAG
GTAGATATGCGTGTATGCCACTACAAAGAATATGACAGCTAAGcaaacta
aaatgaaatatCCAAGCGTGTAGACTACCCATAAATGGAAAATGTTGCAT
AATATTGAACCTAATATGAGGAAAATCCAAG

Coding sequence (CDS) from alignment at scaffold_319:229827..230407

>TCONS_00059212 ID=TCONS_00059212|Name=TCONS_00059212|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at scaffold_319:229827..230407 (Clytia hemisphaerica)
AGAAGTTTGTTGATCCATCCTCATTCGTTGGAGTGTGTCCATTGGATTTC
CTTCATCTCCCATCACCGGCCGGTTGAAAATGGAAACTTTCCTGAGATAG
GACTCTCTTTTCGCTTTGTTATCAACAGGCGGTAAACAACagggaaataa
aatttcaatcgTTGCTTTTCTTATATTTCCTAACCTCCAGTAATAGATGA
ATGAGTTGACGAATGAACTGGATAAACGGATGGAATAAGTCCAAGGAAAC
ATATATGTCCTAAATACACTAGAAGCGTAATCGGTTGTCGCGAAAAAATA
ATACAATCCACTCGGTAGGAAAGATATTACAAAGAATAGTACTATTAGTA
GACTCATAATGATGGTTCGCTCCTTACTCCCAGCACCTTGTGATCGCATT
GAAGCCACGCTGACACAACTAACACGTCTTTGGATCTTGCTTACGGTAAG
GTAGATATGCGTGTATGCCACTACAAAGAATATGACAGCTAAGcaaacta
aaatgaaatatCCAAGCGTGTAGACTACCCATAAATGGAAAATGTTGCAT
AATATTGAACCTAATATGAGGAAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037289XLOC_037289Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059212-exon-scaffold_319-1491911889:229827..230407TCONS_00059212-exon-scaffold_319-1491911889:229827..230407Clytia hemisphaericaexon
TCONS_00059212-exon-scaffold_319-1510915933:229827..230407TCONS_00059212-exon-scaffold_319-1510915933:229827..230407Clytia hemisphaericaexon
TCONS_00059212-exon-scaffold_319-1575043694:229827..230407TCONS_00059212-exon-scaffold_319-1575043694:229827..230407Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059212-proteinTCONS_00059212-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_319supercontigscaffold_319:229827..230407 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.286111	0.372004	0	0.211289	0.385836	0	0.490454	0.459157	0	0.0995471	0	0.190548	0.57085	0.790444	0.541544	2.49899	0.143188	0.513672	0.811046	0.636526	0.368838	0.13493	0.10935	0.497074	0.921554	0	0.130772	0.139563	0	0.215696
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059212 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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