TCONS_00059792 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059792
Unique NameTCONS_00059792
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059792 ID=TCONS_00059792|Name=TCONS_00059792|organism=Clytia hemisphaerica|type=transcript|length=807bp
AGGAGCGACAATTAGTATCAGATATCAGCGCCAAAGATGTCGAAGACACG
GACACGTTCTTCAATGGTTTCCAAGTCATAGTATCCGATAACGTTTGGCA
AGTGATGAGTAGTTCACCTCGCGAGAAGGATGCATGGATGGACGCACTAA
AGAAGGTGTTGAACGATAAATTCATCCCACTTCCTGCGCCCATTGTCGTA
CCTGAAGTCAAACGAACTGGCGCAAATTTGGAACGTAGTGACAGTAAAAG
GAGTGAAGTGAAATCAGCTCCGGTGTTAGACCATAATGCAGAGAATGCAG
CTTTCTTGAGGAGCTACAGTACTGGTGCTACGTTGAATGATAAACAAAGG
CACACTGCAATTTCTGCGTCACCGACTCCTGAATCTCAAAGGaGAGAAGC
TTTATCGTCAGTTCGTGGCAGCGTTCGACAGCCTGTGAAAAAAGAATGGA
GCTTTACCAGGCTAAGACCAACACCACCTTATCAACAGAATTCGAATCTC
AAAACTAGTGATACGACGGGTAGTCCAAGAGCAATGAGACGAATCGTATC
cgcgaaaaataaaatgatcgGAGGAAAAGGATCCCGTGAAGACTTATTAG
CAGATAATTTTGGTCGGAAAGGATCCACACCAACTACAGGATCATTAGGT
TTAACGTCTCGACAAATCCTTGAAGAGGACATGATGATATTGAGCGTCAT
TGAAGCGTATTGTTTCAGTGCACGATCACGACAAAACATGAACCCTCCTG
TCCTTACCCCGATCCGTAACCCATCCTTGGATAAATGCATGAAACCGCCC
TTGTCCG
Run BLAST on NCBI

transcript from alignment at scaffold_331:367934..375113+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059792 ID=TCONS_00059792|Name=TCONS_00059792|organism=Clytia hemisphaerica|type=transcript|length=7180bp|location=Sequence derived from alignment at scaffold_331:367934..375113+ (Clytia hemisphaerica)
AGGAGCGACAATTAGTATCAGATATCAGCGCCAAAGATGTCGAAGACACG
GACACGTTCTTCAATGGTTTCCAAGTCATAGGTATATAATAACATTCATT
TTGAATAGTTTCTTAGTTGAATTTGGTGAATCCCTTTACGAAAAGTTAAG
ATAGTCACTAAAGTTTTTTGGAGACTACATTCTATTGTATGTATATCCTC
GTTCTTTGGGTACCAGAATTACAcacctgtgtcacagacccactgggaac
ccagccccactggaaaatttggcggaAATTTGGTTCCcgatgggaaaata
ccctggaatttcagcccactGGGAGATTGGCTTTGATATTTCATCCGTAC
ACCAAAATCAATGTTTAAAGATTGCACTTAAAAACCATCGTCACTAGATT
TTCTAACCTCGGAACAATAAAATTCAGATctccattgagatttcaatagg
aattttatccccactgaggaaaaagttccaccagggctgtgagacggGGG
TGTAAAATTGGATAAAAGATCAGCATAAAAAGATTTACCCCGTTGTATTG
GGCCGAGGAGTTAATTTTAATTGTTCGGGTTCAAAAAACTGTTCAATGTT
TAGCAAAACTTTCTCGTGACCAAATCATTCCTGTCAACTTTTCAGTATCC
GATAACGTTTGGCAAGTGATGAGTAGTTCACCTCGCGAGAAGGATGCATG
GATGGACGCACTAAAGAAGGTGTTGAACGATAAATTCATCCCACTTCCTG
CGCCCATTGTCGTACCTGAAGTCAAACGAACTGGCGCAAATTTGGAACGT
AGTGACAGTAAAAGGAGTGAAGTGAAATCAGCTCCGGTGTTAGACCATAA
TGCAGAGAATGCAGCTTTCTTGAGGAGCTACAGTACTGGTGCTACGTTGA
ATGATAAACAAAGGCACACTGCAATTTCTGCGTCACCGACTCCTGAATCT
CAAAGGGTATGTCGATTTTTTCAACTTGTTTCAGCGAATTTTGGTATCtc
cgtttttttaataaactgGAATNGATTTTTTCAACTTGTTTCAGGGAATT
TTGGTATCTCCGGTTTTTTAATAAACTGGAATGATTTTGAATAAAGCACA
GTGATGGATGCGAAAAAACGTTGATTTAAATTTTAAGGCTGCGTTCACAC
GCTAATTTTGTCGCCTGACACAAAGTCTTTGCTTATAGTACATTAGGTCT
TGAATATCACGAATTTACAAACATTTAGTGACTTCAGATAGCACATGGTT
CTTGACCTTTGGACCTTACCTTgattgcttttttcattttcaatttgacT
TTGTTTGTATCTCGTAAATACTTAACAAGACGAGCTatcgttttttttat
atatataccgAGGGTCTAAAAAACAAGCTAAAATATCCTTTAAGATCAAG
ATTTAAGTGAACATtttaaagtctgaaaatcaaggAAAATGAGAATAGCC
AAGGcaaagccaaaatttactaTTTCATTTAAACAAGCCTTTAATAAAAA
AAGTGAGTCTGTGCAATTAGACCTACTTCAGACAGATGCTTCGTGTCGTA
ACAGCTACGGAGTTAGTActcaatgaaaagaagaaatttccCATTCcgtt
tgttttcttctttacagttttattgttttttcaatgaaagttttttgttt
attctaTGGACtctcttcttttattttcacttttcttaTATCTATTCACC
ATTCGATTACTTTTGGAGAGTCTGATATCAATGAATAAGGTCTTCATCTA
AAAAGTGTGTGTGGCTTTGGGTGTGCTGGCTTGCTAGTGaagattttaca
aatattttttataaattgcTCAACTTTNACTTTATGGTGTGGTGGCTTGT
GAAGATTTTacggatattttttttttaattgcttaACTTTATTATTGCTC
TTCCAATTCATGGGAAAGCAAATggaaattttaatcaatttgaTGGAATC
TTTTGTTGTGTTTATGCTGGGCATTTCACACTGCGCTTCTATGTAACttg
cattaaaaaaaaaacaggaaagccccaaaattaaaaagtagatTGCAGGC
GTctgcgaaaaaaaaaataagttcaaCTGATTCTGTTGTATCTCTCGGca
aatgaaattcaaaaatgcaacatttgcGTTACCAGGCGTTACAGCAATTA
GTTTCGCCTTAGCTTTAATTAAAAGAATCTGATGAGTTTCTCCAAGTATG
CAAACTCAAAGAAATTGAATTTCGTTTGCCctcaatactttctttttggt
ttttcaTCATATCCTTTAGTTGAAATATTAGCGTTTTATCGTCCAGTCAT
AGAAGGTTGTTTCCAACAAATCTtcattgttgatttttttcggAATTAAT
AAAGGAAACCCTCATCAATAATCAATCATTAtattttaaaaggttttttt
tccAATTAAGGTTTCATTGTTTGCATCGAGGTTGGATGTCCTTGTTTAGA
TGTTATATGTCCTTGAGAAagatctttaaaaaatattatttagcTTTTTG
GGTAGTTTGATTTAAAACCCCTTTAAAATCAATGAATACTAGGCTTTACT
AGATTTTATccataaaagtaaaaattagtcatttttgcttgattaaaAAA
AGTACTCAATCAGAGAAAAGAACTTGAAAGTATAATCAAATATTTGGTTT
TGCTCTCTTCTCGAAGAACATTTGCTGTTCAAATCAATTTGTTTAATTTc
taacaaattttattttgtggAACTTGTTTGAAGAAACCCCCCCAGCGATT
TGCGTAATGACGTAATAGGGACTTTTTTGTAGCgcgattacgtgatttgg
aaattttttttcgtgattgcgtgatcagtGGTCAAAACGTGAgcttgatt
tcaaaaatttttggccgtgatacgtgatttgAACTTTTTCAAAGGGGTGC
CTGattatccaattttttttgccgatttgcgtgatcgtgattgaagagaa
aaaattaatttaatttaattaccgctgggggcctctttGAGATGATTAAT
ACTTTAATTCTTTATACTACAATTATAATATGAAATGAAAAGTTAGTTAA
AGCACAATTTAAATTTACTCCAAACAATCATGCCTTTTGTATCACTAATC
GCACcaaataaccccagcgagaaACCTCGACAAAGAGGCCGAAGTTTTCA
TGGACTGAAACCTCGCTCATCATCCTTTACTGAACTAAACAAACGTTCGA
AAGCATTATCATGTATTGAGATTACGTCACCATTACGTTATGAGTGGAAG
CCATCTTTCATGAAGAATTATGAGACGTTACCAGAGTTACCTTCACCAAC
AAATAATGAGGATGATGATGAAAAAGTGATTGATGTAAGAACACACCAAT
GACCTCTTACTACTCGACTAGGTTGGggttcttttatttaaaaaatgtgt
cCAGTTTTAGAGCCGACTAGCCCGTCTTTTCGTTGTTTTTCTGCTTGACT
ACAATGGAcgattcaaatgttttgaatgtTCGTCTTGTCTTGAATTCAAA
TTGCATAGGGTTCGTTTTCATTGACTTAATTTGAATGAACTAAACAACGG
CCTATTCAACTGAAATCAATTATTCCAGACGACGAAACTCAGTACTGAAA
GGGAATACATTGGAAACCCAAAAAAAATCGGCGAAGATAAAAAAAGGTCT
CGCACTGTACCGCTTTTCAGTTATATATATTATAAGCATTTATATCATTT
GTGTTTCTTATGAAAACCTAAGATCATAGTTGCTAAATTTAGTTATGGCC
TCGTCCTTTCCAAGACTTTCTTAGTAATATCTATATACAGCACTAACCTG
TATTCACCCAACTTTTCGTGGCATACAAAATGAAGGAATTCTTCTGTAAA
ACCAGACCCACTCGGAACAGAAATGGGTCTCCTTAAGGGTGCTGAAAAAG
CCTATTTTTACACGAATACtataaaacacaaaaaaaatattaaattactC
TGTAAGGTTGCTTATAGATGATAGCAAACATAATATCTTcatcatcaaga
ttttgaagaaaaaatcctATAAAAACTGAGACGCGTAGGTGGGAGGTTTC
gactttgtttgctttttcaatcttcactttttaatatcctttgatttttt
tttttaatttcttttattgttgtttttttacagaGAGAAGCTTTATCGTC
AGTTCGTGGCAGCGTTCGACAGCCTGTGAAAAAAGAATGGAGCTTTACCA
GGCTAAGACCAACACCACCTTATCAACAGAATTCGAATCTCAAAACTAGT
GATGTAAGAATATGTTCTCCATATTATTTACAGcatgtcttcattttcaa
gttttgaCTAATTACAATACACTTTTCGACCGTAATCGCGTGcatcttta
ttatttaatttgccaccctaaacttgatccaatccttttttacactttct
aCTATTATCTTTATTATACTACTGCTATAAAACTTATCTTAAAGAAATGA
AGAATGTTAGAAATATTAAACTGTTCCCTTGGTGAGTCTCTTGGTATGTT
ATTATCATCATTGAGCTGTAATTCTGAAAACAGTCCTTTAGCCCATATGA
AAAAGACTAGACTGAGACTTCAAAGTTTATGTCATTTTCAATGTCACTCA
ATTTTTAATTCGATATAAGAAGTTAGATTGGGAGGTTACATCGCGACATT
AGCCATAATATAATATTCTATTGTACACTGCAATCGCGGACAAAAAGTTG
CCGGGCCTTCATAGCTAGTCAGGGTAGTTAAAAaccatgatgatgatgat
gataaaagacttgaaaaaGGTACTTAGGGTTATGAAGATTCAAGTAGACA
TATTTTAGAAATGCCAATATTTACATccaactctctctctaattcgaacc
tctactatcgaatctttctataactcgaactaaAATACTGGTCACCTAAG
CTGAAAATTAGTATTAaatactctctctaattcgaatctttctctgatTT
GGTcgcttgaaaatcgaattagagagagttaattgtaacttttttttgtg
GATCTTTTAAAGTTACTTTCTCATTCTACATTACAGACGACGGGTAGTCC
AAGAGCAATGAGACGAATCGTATCcgcgaaaaataaaatgatcgGAGGAA
AAGGTAATGGTTTTTCCCCCATATACAATACACACAGCCTTTACTCCATG
ATATTAGTTTCCCACCTGGTAGTTCAACCACAATCAGTGTGGAGTGAGAG
AAAGTgtagaaatccagggaaaggagtggcgccctcccctaccttcggat
agacagctatacgaaaagggagccttcgggtcgccctcgactgcggttgc
aaacttacttacttactacaaGTTACCTCGCTACGGTCATGAAATTTAGG
TGTGATTCGAACCCAGATCTTTTCATCATTGGTCATTTCTTATAAATCTT
TTGTACAAAATTTGCTGTATTTCTAAACACTAAACAAATCTGCTATCTAC
TCTTCATCCAGGATCCCGTGAAGACTTATTAGCAGATAATTTTGGTCGGA
AAGGATCCACACCAACTACAGGTAATTTAAATACCCTATAACTTCGAATA
AATTCCCCTCctttgaataactttttttaataaacgcccccttcgaataa
acACCTGTCCTCTTGGATGGGGTGCTTATTTGAAACAAGTAACTGTAAGG
aagtataaaaataaaacttagaTATATGTTGATACTTGTATTCTTTTAGT
ATTTTAACTGATCTTCATCCGTTTCTACATCTCTATATTGATATATTTGA
AAAGGTTGAAATAAAGCCCCCAATCACTTTATTAGTGACCTTGTTAAATA
ATTAGTTAATAAACACCCCCTGAATAAACGTTCCTCATGCTTTTCAATAA
GACGTGCGCGATCGCGATCGCGCTTAGTAAAACGCTCGTCAATCTCGTAT
GGTGAGCGAAAAATTGCGCGCACGCTAAAATTGGTTCACGTGCGCGATTT
CGTAAAAATTTTGCACGCTTCGCACGCGTTCTCTTTGTTAGGTGAGTGAT
TCGTCGCTCTCCTACTTAtttcttcctggaaaagccTGCTTCCTCctgaa
aaaaaagagatttcTTTTTACAATTGAAGGCATTCATCTAATTAATCCAA
TCTTCCTATTTCCAGTAACCCATAGAATAATTTTCTATAGTTCGAGAGTT
AACTGTGTATTCCTATTTGgtcaaagaaaatttatttatttcatttgaCC
ATCTTTTGCAGGATCATTAGGTTTAACGTCTCGACAAATCCTTGAAGAGG
ACATGATGATATTGAGCGTCATTGAAGCGTATTGTTTCAGTGCACGATCA
CGACAAAACATGAACCGTAAGTTTTCTACTTCGTTCGCAACTTTCAGctt
acacaacgttgttttggCGTCCATCTTACGTTAACTAAGCCAATGTTACC
TTCGTTGTACAAAGTTCTTCTCCAGACTCAATAAAATTCTGCACATTTTG
ACGAATCCATCCAAAAAAGTCTGAGACccaaaacttttctttgaccAGTT
ATCACTAATTTCCCTAACTTCAACTGTTAAATAGTGATTTGTTTAACTTC
AAATTCGGTTGAAATTTTTTCcccacaatttttttcttcatcagaaaTAT
TATAAAGTTAAGTTAGGTAGAAGACGGTAGAGGACGGTATGTGTTCATAC
TGCCTGGACAGTCCCACGATGAGAGTTTTGTCTGCTATGGTTAGTTATGG
CTTTTCCTAAGAGAGTGATTTGACTCATTAGTCCGAAAGTTAAGTTAGTT
TTAagtgtttgtttgtttctttctttcgcCTAGcttacattttgaatttt
cttttattttttattttcctgtACTGCACGTTtaaattgtttaatttttt
ttaccgcCGACTTTTAATTTCTTCCGGCAGCCTGCACTCAGGAGACGaga
gaaaaataaagattttacgttcattttttgtttctttttaattgtttttg
ttaattttatgACACATTACaacttttaatttcatttaaatcACATTATT
TGCTACAATTACAAAGTTTGAAATAGTGGGAGGAAGGgaatttaaagtaa
aaacttGTGAAATCACGTGATAAATTAAAATGAACGTTCTCCTTTGTTCT
TCTCTCTACCCATGTAGCTCCTGTCCTTACCCCGATCCGTAACCCATCCT
TGGATAAATGCATGAAACCGCCCTTGTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037616XLOC_037616Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059792-exon-scaffold_331-1491911889:367934..368014TCONS_00059792-exon-scaffold_331-1491911889:367934..368014Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:367934..368014TCONS_00059792-exon-scaffold_331-1510915933:367934..368014Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:367934..368014TCONS_00059792-exon-scaffold_331-1575043694:367934..368014Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1491911889:368579..368889TCONS_00059792-exon-scaffold_331-1491911889:368579..368889Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:368579..368889TCONS_00059792-exon-scaffold_331-1510915933:368579..368889Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:368579..368889TCONS_00059792-exon-scaffold_331-1575043694:368579..368889Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1491911889:372067..372186TCONS_00059792-exon-scaffold_331-1491911889:372067..372186Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:372067..372186TCONS_00059792-exon-scaffold_331-1510915933:372067..372186Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:372067..372186TCONS_00059792-exon-scaffold_331-1575043694:372067..372186Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1491911889:372970..373036TCONS_00059792-exon-scaffold_331-1491911889:372970..373036Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:372970..373036TCONS_00059792-exon-scaffold_331-1510915933:372970..373036Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:372970..373036TCONS_00059792-exon-scaffold_331-1575043694:372970..373036Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1491911889:373395..373454TCONS_00059792-exon-scaffold_331-1491911889:373395..373454Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:373395..373454TCONS_00059792-exon-scaffold_331-1510915933:373395..373454Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:373395..373454TCONS_00059792-exon-scaffold_331-1575043694:373395..373454Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1491911889:374145..374249TCONS_00059792-exon-scaffold_331-1491911889:374145..374249Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:374145..374249TCONS_00059792-exon-scaffold_331-1510915933:374145..374249Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:374145..374249TCONS_00059792-exon-scaffold_331-1575043694:374145..374249Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1491911889:375051..375113TCONS_00059792-exon-scaffold_331-1491911889:375051..375113Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1510915933:375051..375113TCONS_00059792-exon-scaffold_331-1510915933:375051..375113Clytia hemisphaericaexon
TCONS_00059792-exon-scaffold_331-1575043694:375051..375113TCONS_00059792-exon-scaffold_331-1575043694:375051..375113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:367934..375113 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.2217	5.00824	7.3973	10.8137	17.1103	8.20283	18.5099	23.1539	20.4584	26.0238	17.4508	13.3928	14.8338	16.1939	11.0515	16.3997	32.4068	22.8767	17.2858	18.2225	11.0456	13.3414	9.93751	14.69	12.0763	6.2122	9.57243	7.1302	9.83938	8.26417
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059792 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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