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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059203 ID=TCONS_00059203|Name=TCONS_00059203|organism=Clytia hemisphaerica|type=transcript|length=4446bp GGATTATTTGATCAAAATAGATGAGCTGTACAATCTCTTCAAAAGTTGTT TCTACAATGATCAAGACACTTTGGAAGAGTTTCTTAACTATATCTGCTTA ATCAACAAAGAAATTGGTATTAATTACAAAAGCGAGAACTACCTTGGAAA ATCTTGGTATCATCATGCTATCGATTTAGCTGGAGAATCAGAGAATGGAG CTATGAAAGTGATTGACTGGTTGACACTAAATGAATTTAACAGCAACTTA GAAGATTCAGAGGGCCAAACCTCCTTGCTTTATTGCtcacaaaaaatatt caacttCCAGAATAAATCATCAGATTTCTCTAACTCATACAGTCAGATTT GCGTAAGAATGTTAGAAAGAAATTCTTCAATATGGTTTAAAGATCATCGA AATAAATCAGCTCTCTACTATTTGATTTTATCCAACAGATGTCTGGACAA AGTAAAAGAAGCAGTCAATAATTCAGGTTTAGAAGAATGCAGAGAAGGTA ATTTAGCAATAATCTACagtttttttaatacaaatttatGTTGCTTTGAC CTGAAGAGAGTTTGTACTCTGGTGGGTGGGTTAGAGTCTTTGGATTTTAG GAATAATACCattcacaaaattttgctttgaattGTGGGTAGTTGTAAAA CTGTACTGGATCAGTACCCAGAATGTGCACctacaaaatttattgtttat tttcctCTTTTATTTCAGAATTTTACCATACTTTCCAAAATTGCTTCAAA TTACAACCCTCCAAGTCTGACAATTCACAAGAAAATAACACCAAACTAAG GAATAACTTCAAAGTACTTGAGTTCCTGATTGACAATAATCCAGACTTAA GAAAGGTTATTTTCAAAGAGAAGTTTCAAGGATATTCATGGTACCACTTT GCTATCAAACTTGCTGATGAACAAAACCAATCTACTCTTGTTTTAGATGT GATTCAATGGCTTGAGAAAAAGGGCTTCAATTGCCAAATAAAGGACTCTA ACAAAAGGACACCTTTGCTATACTGTGCTGAAAAAATGTCCAGGTCTAAA AAGAAGAATCCTACATATAGCACcattttcataaaacttttaGCAATGGA CTCAGAATTTCTGATCAAAGATAAGAATGGGAAATCAGCGTTGCAGTATT TGCTTCTCTCAAATAATTATGCAACAATATTAAAGGATATCATAAGTCAG TTGACATTAGTTGATTTTATTTATGGCTCATCAACCTTATTGTCTCACTG CTTTGCTAGATATTGCAAAAAAGATTTCGTCATGAAAGCTTTTTTGCACA AGCTTaaaacactttttgaaaagagcGAAGCTAGACTATCTACTATCTTG AACGAAACTGATAATGATGGTTGCATTCCATTGATTCTTGCAATCAGTAA TCGTTACCTTGAAGATTCTACGAAGCTTTTGTTATTGGATATGACTGGAA TTTGTAAAGAATTGTTCCTTGACTTCTGTAACCAGGACTTTCACTACAAA CATAATGCTATTTATGCAAAGTTAATTGAAAAGATTttagcaaacaaaga tttgaaagagGATTATTTGCAAAACAATGTTCATTGTGATTCTAAAAAGA CACCGCTGCACTTCTTATGTGCAAAATGTGACAATAAACATTTGGGAATC ATCAAATGTTTGGTTGGTAATCATAGTCAAAAGATTGATTTCAATGCAAA AGACATAAATGGTCAAACTGCAATTTTCCAAGTCAAGAATAGTGAAGTTA TGGAATatcttttaaaggaaaataaattCGACCTCTGGCTTCAAGATAAC AATGGGAAGAATTTATTGCATCACTACTGTGGGAAAACTTACTGCAATGC AAAAGTTGTTGAAATGATAATAAATCAAAGTTCAAATGGGAATGCTCAAT CTCAGAGTATTATCAATATTAGTGATAATAACAAGAATTTGCCTTTCTTT TATGCCAAAAACAAaggacaaacaaacaaagttcTTAATCTTCTCCGGAC GAAAGAGATGAATTTGGAGAAGTGGGACAAGGAAGTGCTTGACACAATCA AAAAAGGTGATTTGAACAGCATCCAGCGGCTCAAAGCTAAAATGCTTGAT GAGAAACATCCCAATTTTGAGGAATTTATTTCTTTCAGAACTAAACAGAC TATTCTTCATGCCACAATGCAAGCTTACCCACAATGGGAAGTAAAAACTC GAAATGAGGTGTTGAAATTTATCATGGAAGAATTTAAAGATGATCTGAGG AAACATATCACTCTTAAAGACAAAGATGAGAAGGTACTTCTACATTACAT TGCAGAAGACCTAGATTTAACTTgttgtttctttgaaattttgaaaaacc ttGGTTGTGATTATTTTGTTGATCAATATGATGTCAGTAATGGATGTAAC CTCGAACAGAAAACACCGGTTCATTATGCTATTCAGAGAaggaatatttt tcttcttaaaaaactAGGCAGTGAACACATTGACTTGTGTGCAAATGACG AGAGTTGCTTAAATTatcttcattatttttgtatACATTACTGTAAAGAC ACATTTGACAGCCAACACTTCAAGGATTTCATCAACAAATGCTGTAAAAA TGACATATCCAAATCGTTTGAAAAACTATGCCGCTTGAACAAATCACCCT TGATTTATGcacttgaaaatgaaaacgttGATGAAGTGTTCTTAAAACAT ATCCTCAGCTATTGTGAGGCTAAACACCTGATCAGCTGTAAATCATCTTG TGGATATGCCCTTCAAGAATGCGATTCAAAGTCAGAGACACCATTCGTTA AAGCCATCAAGTCTAAGGATACTTTTAAGTTGGATTGTATACTTAAGCAA TTAAGTATTCTATTAGCAACGGAAGAAGCACAATCGATATCATGGTGCTA TAAAGAGAACTTTATATATCTCCTTATGAAATATGGAAGCACAAAGCAAA TGGAAGAATTCTTGAAACTAATacacaaaaaacattttaatcatGTTTGG TCAAAAGCTAAAGAGAAACTTTGTCAGGATAATGATGATAATGTTGTTTT CCAAAATCAGGATAGTTGTTGGATGGCATTCGTTATTGCAGATTATTTTT CTTGCCAGCTGACAATCAGCCAATTAAAGCAGACTGAGAAAAATCAACTA AGGGATCAATTACAAGAAGAAATCCTTTGCAAACGCTTACTTGAAGGAAT CAGAAAGGCAGGTTTCGGTCTTTATGATGACAGTGAATTTATCCTTAAAC CCTTTGTTTACAAAGGTGAAGAGTTGCTCAAAAAAATCTTGCAGAAGTAT CCAGACATCACTGCTTCAGAGTTTATTACTAAAATATCGAAGTTGGGTAG AAAAGATATTACACTGCATTTGGAATCAtttgaaaagaagaaattagATC AACTGAACACTGATCAAAGAAGTCAACTAACCTTTCGACTTGGAGCAGAA TCATCTGGCAGTCCTAACGAACCGCTGATATTTTGTGATCCATTTGGGCT GTCAGAACAATCAATGACAACTCCATTCAACTTAATAGAGAAAAAGCACC CTTCTGAACGTATGTTGGAATACCTTCAAAAGCAAGCGCCAGATTTGACT CTggaaaaaatatacaaattacTTTTGGATTTGCAGGAATGTAAATTGGC TGCCATGACTGTTGCAAAAATTGTTATCAAAAGAATTGATGTCAGTGGAA AATGATTTTTCACTGTTAAATTATTTAGTTAGTACAGTATTTGGATGTTA ACTTTTTATATATTGCGCTAGCAGGATATTCTAATTGTTGTCAATCAACT GACCATTGTTAAAAAAACTCTTTTGTTTAACATTGACACTTTtcatgaat ttaaaaaagagcAAATTCAACTCCAATATTGTGGTACTTATAGCCATGAT TGGGTTTTAAGGataacttttcaactttttagttTATATATTTTAAGATA ACTTCTTATAAATTGATTCTTTGCAATTTGAGTGATCGATACTGATGCAG AGCGAATTACTCcattaaaagaaacaaaatcttttttatcaatacGGCTG GTTTCATGCAACATTGATGCAATCGTCAGTTGGattattagaaaaattaa aacgtAAACGTTTTTTATTGAATTAAATAGAGATGCTTGACCTAATGTGT GTTACTTATGCTTATAAAGATTACAATGAATACAATTCAcctgtttattt tatttcaaatgtaTTAAAAATATATAGAACTATCATTAATCTGATTATTA TAATGCTTGTATATAATTAAATataattaaattttcttaaataaaaattt gcatACTAAAAATCTTTGGAATTTTATATAAATGAATTTTATACACATTT TATATCATCTTAATTATCTTACAGTTTAGTTTAAATATGTATGCAATTTA ACATTCAGTATTGTAAATGTCAGTATTTAGAAATTATAAAATGTTG Run BLAST on NCBI transcript from alignment at scaffold_319:379760..384993- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059203 ID=TCONS_00059203|Name=TCONS_00059203|organism=Clytia hemisphaerica|type=transcript|length=5234bp|location=Sequence derived from alignment at scaffold_319:379760..384993- (Clytia hemisphaerica) GGATTATTTGATCAAAATAGATGGTGAGTTAAATTGTATTTAATTTATTC
ATAGAAATTAAATAAGCAATTCTAAAGCACCAATAGTTCAATGATACTGT
AAAGTCTTATTATAAAGATTGATTATACTCAACCTTCTACATCCCGTTTC
AGAGCTGTACAATCTCTTCAAAAGTTGTTTCTACAATGATCAAGACACTT
TGGAAGAGTTTCTTAACTATATCTGCTTAATCAACAAAGAAATTGGTATT
AATTACAAAAGCGAGAACTACCTTGGAAAATCTTGGTATCATCATGCTAT
CGATTTAGCTGGAGAATCAGAGAATGGAGCTATGAAAGTGATTGACTGGT
TGACACTAAATGAATTTAACAGCAACTTAGAAGATTCAGAGGGCCAAACC
TCCTTGCTTTATTGCTCACAAAAAATATTCAACTTCCAGAATAAATCATC
AGATTTCTCTAACTCATACAGTCAGATTTGCGTAAGAATGTTAGAAAGAA
ATTCTTCAATATGGTTTAAAGATCATCGAAATAAATCAGCTCTCTACTAT
TTGATTTTATCCAACAGATGTCTGGACAAAGTAAAAGAAGCAGTCAATAA
TTCAGGTTTAGAAGAATGCAGAGAAGGTAATTTAGCAATAATCTACAGTT
TTTTTAATACAAATTTATGTTGCTTTGACCTGAAGAGAGTTTGTACTCTG
GTGGGTGGGTTAGAGTCTTTGGATTTTAGGAATAATACCATTCACAAAAT
TTTGCTTTGAATTGTGGGTAGTTGTAAAACTGTACTGGATCAGTACCCAG
AATGTGCACCTACAAAATTTATTGTTTATTTTCCTCTTTTATTTCAGAAT
TTTACCATACTTTCCAAAATTGCTTCAAATTACAACCCTCCAAGTCTGAC
AATTCACAAGAAAATAACACCAAACTAAGGAATAACTTCAAAGTACTTGA
GTTCCTGATTGACAATAATCCAGACTTAAGAAAGGTTATTTTCAAAGAGA
AGTTTCAAGGATATTCATGGTACCACTTTGCTATCAAACTTGCTGATGAA
CAAAACCAATCTACTCTTGTTTTAGATGTGATTCAATGGCTTGAGAAAAA
GGGCTTCAATTGCCAAATAAAGGACTCTAACAAAAGGACACCTTTGCTAT
ACTGTGCTGAAAAAATGTCCAGGTCTAAAAAGAAGAATCCTACATATAGC
ACCATTTTCATAAAACTTTTAGCAATGGACTCAGAATTTCTGATCAAAGA
TAAGAATGGGAAATCAGCGTTGCAGTATTTGCTTCTCTCAAATAATTATG
CAACAATATTAAAGGATATCATAAGTCAGTTGACATTAGTTGATTTTATT
TATGGCTCATCAACCTTATTGTCTCACTGCTTTGCTAGATATTGCAAAAA
AGATTTCGTCATGAAAGCTTTTTTGCACAAGCTTAAAACACTTTTTGAAA
AGAGCGAAGCTAGACTATCTACTATCTTGAACGAAACTGATAATGATGGT
TGCATTCCATTGATTCTTGCAATCAGTAATCGTTACCTTGAAGATTCTAC
GAAGCTTTTGTTATTGGATATGACTGGAATTTGTAAAGAATTGTTCCTTG
ACTTCTGTAACCAGGACTTTCACTACAAACATAATGCTATTTATGCAAAG
TTAATTGAAAAGATTTTAGCAAACAAAGATTTGAAAGAGGATTATTTGCA
AAACAATGTTCATTGTGATTCTAAAAAGACACCGCTGCACTTCTTATGTG
CAAAATGTGACAATAAACATTTGGGAATCATCAAATGTTTGGTTGGTAAT
CATAGTCAAAAGATTGATTTCAATGCAAAAGACATAAATGGTCAAACTGC
AATTTTCCAAGTCAAGAATAGTGAAGTTATGGAATATCTTTTAAAGGAAA
ATAAATTCGACCTCTGGCTTCAAGATAACAATGGGAAGAATTTATTGCAT
CACTACTGTGGGAAAACTTACTGCAATGCAAAAGTTGTTGAAATGATAAT
AAATCAAAGTTCAAATGGGAATGCTCAATCTCAGAGTATTATCAATATTA
GTGATAATAACAAGAATTTGCCTTTCTTTTATGCCAAAAACAAAGGACAA
ACAAACAAAGTTCTTAATCTTCTCCGGACGAAAGGTATGTTATAAAATTG
TTCAAATTAGTAATACAAACATAATATGTCTGAAATTCAAACATTCAAGA
AAACTCAAAATGAAGTCAGTAATGAGTTTTTGTAACCATTTTTGGCAACG
ATTGCTGAATGCTTGGTTGCTGAATGCCATAAGTGTGAAGATACTTCTTT
ATACTTAAGAATCTCTTACAAATCCTAGAGTAGTCATTTTTAAATCAACC
ATTTCTGGTTAAATGATCTGAATAGAATTTTTTTTTCTAAGCCATTTCAA
CATTCAAGAAAACGCTCTCTTCTTCTTTTAGAGATGAATTTGGAGAAGTG
GGACAAGGAAGTGCTTGACACAATCAAAAAAGGTGATTTGAACAGCATCC
AGCGGCTCAAAGCTAAAATGCTTGATGAGAAACATCCCAATTTTGAGGAA
TTTATTTCTTTCAGAACTAAACAGACTATTCTTCATGCCACAATGCAAGC
TTACCCACAATGGGAAGTAAAAACTCGAAATGAGGTGTTGAAATTTATCA
TGGAAGAATTTAAAGATGATCTGAGGAAACATATCACTCTTAAAGACAAA
GATGAGAAGGTACTTCTACATTACATTGCAGAAGACCTAGATTTAACTTG
TTGTTTCTTTGAAATTTTGAAAAACCTTGGTTGTGATTATTTTGTTGATC
AATATGATGTCAGTAATGGATGTAACCTCGAACAGAAAACACCGGTTCAT
TATGCTATTCAGAGAAGGAATATTTTTCTTCTTAAAAAACTAGGCAGTGA
ACACATTGACTTGTGTGCAAATGACGAGAGTTGCTTAAATTATCTTCATT
ATTTTTGTATACATTACTGTAAAGACACATTTGACAGCCAACACTTCAAG
GATTTCATCAACAAATGCTGTAAAAATGACATATCCAAATCGTTTGAAAA
ACTATGCCGCTTGAACAAATCACCCTTGATTTATGCACTTGAAAATGAAA
ACGTTGATGAAGTGTTCTTAAAACATATCCTCAGCTATTGTGAGGCTAAA
CACCTGATCAGCTGTAAATCATCTTGTGGATATGCCCTTCAAGAATGCGA
TTCAAAGTCAGAGACACCATTCGTTAAAGCCATCAAGTCTAAGGATACTT
TTAAGTTGGATTGTATACTTAAGCAATTAAGTATTCTATTAGCAACGGAA
GAAGCACAATCGATATCATGGTGCTATAAAGAGAACTTTATATATCTCCT
TATGAAATATGGAAGCACAAAGCAAATGGAAGAATTCTTGAAACTAATAC
ACAAAAAACATTTTAATCATGTTTGGTCAAAAGCTAAAGAGAAACTTTGT
CAGGATAATGATGATAATGTTGTTTTCCAAAATCAGGATAGTTGTTGGAT
GGCATTCGTTATTGCAGGTAAGACCTGACATTTTAAAAGAGCACATTTGA
ATCAAGTGAAAAGAGAAAAACATTTAAGATGCACTCACAAAGATAGCAGC
TATCTTCTGAGCCTCCATGAGAATGAGCTATAGTGGAATTAATAATGAGT
TGTTTCATATTTGTTGTCAATTTACTTTTTATTTTCTTTTGCTACCTGTT
GCTACACCTGCACAATCTAGATTCACCTAAAACTTTTTATTTTTTTGTAT
TAATCCAGTACAGCTCAGGATAAAATTCTTCAACCTTTTCTCATAGTAAT
ACCTTGAAATTCATCAGACTTAAAAAGAGGTAAAAAGTGTTATAAGAGTG
AATTAACCGATCAATTTTCTTTTTACCAGATTATTTTTCTTGCCAGCTGA
CAATCAGCCAATTAAAGCAGACTGAGAAAAATCAACTAAGGGATCAATTA
CAAGAAGAAATCCTTTGCAAACGCTTACTTGAAGGAATCAGAAAGGCAGG
TTTCGGTCTTTATGATGACAGTGAATTTATCCTTAAACCCTTTGTTTACA
AAGGTGAAGAGTTGCTCAAAAAAATCTTGCAGAAGTATCCAGACATCACT
GCTTCAGAGTTTATTACTAAAATATCGAAGTTGGGTAGAAAAGATATTAC
ACTGCATTTGGAATCATTTGAAAAGAAGAAATTAGATCAACTGAACACTG
ATCAAAGAAGTCAACTAACCTTTCGACTTGGAGCAGAATCATCTGGCAGT
CCTAACGAACCGCTGATATTTTGTGATCCATTTGGGCTGTCAGAACAATC
AATGACAACTCCATTCAACTTAATAGAGAAAAAGCACCCTTCTGAACGTA
TGTTGGAATACCTTCAAAAGCAAGCGCCAGATTTGACTCTGGAAAAAATA
TACAAATTACTTTTGGATTTGCAGGAATGTAAATTGGCTGCCATGACTGT
TGCAAAAATTGTTATCAAAAGAATTGATGTCAGTGGAAAATGATTTTTCA
CTGTTAAATTATTTAGTTAGTACAGTATTTGGATGTTAACTTTTTATATA
TTGCGCTAGCAGGATATTCTAATTGTTGTCAATCAACTGACCATTGTTAA
AAAAACTCTTTTGTTTAACATTGACACTTTTCATGAATTTAAAAAAGAGC
AAATTCAACTCCAATATTGTGGTACTTATAGCCATGATTGGGTTTTAAGG
ATAACTTTTCAACTTTTTAGTTTATATATTTTAAGATAACTTCTTATAAA
TTGATTCTTTGCAATTTGAGTGATCGATACTGATGCAGAGCGAATTACTC
CATTAAAAGAAACAAAATCTTTTTTATCAATACGGCTGGTTTCATGCAAC
ATTGATGCAATCGTCAGTTGGATTATTAGAAAAATTAAAACGTAAACGTT
TTTTATTGAATTAAATAGAGATGCTTGACCTAATGTGTGTTACTTATGCT
TATAAAGATTACAATGAATACAATTCACCTGTTTATTTTATTTCAAATGT
ATTAAAAATATATAGAACTATCATTAATCTGATTATTATAATGCTTGTAT
ATAATTAAATATAATTAAATTTTCTTAAATAAAAATTTGCATACTAAAAA
TCTTTGGAATTTTATATAAATGAATTTTATACACATTTTATATCATCTTA
ATTATCTTACAGTTTAGTTTAAATATGTATGCAATTTAACATTCAGTATT
GTAAATGTCAGTATTTAGAAATTATAAAATGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059203-exon-scaffold_319-1575043694:384971..384993 | TCONS_00059203-exon-scaffold_319-1575043694:384971..384993 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1575043694:382860..384841 | TCONS_00059203-exon-scaffold_319-1575043694:382860..384841 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1575043694:381477..382562 | TCONS_00059203-exon-scaffold_319-1575043694:381477..382562 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1575043694:379760..381114 | TCONS_00059203-exon-scaffold_319-1575043694:379760..381114 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1510915933:384971..384993 | TCONS_00059203-exon-scaffold_319-1510915933:384971..384993 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1510915933:382860..384841 | TCONS_00059203-exon-scaffold_319-1510915933:382860..384841 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1510915933:381477..382562 | TCONS_00059203-exon-scaffold_319-1510915933:381477..382562 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1510915933:379760..381114 | TCONS_00059203-exon-scaffold_319-1510915933:379760..381114 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1491911889:384971..384993 | TCONS_00059203-exon-scaffold_319-1491911889:384971..384993 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1491911889:382860..384841 | TCONS_00059203-exon-scaffold_319-1491911889:382860..384841 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1491911889:381477..382562 | TCONS_00059203-exon-scaffold_319-1491911889:381477..382562 | Clytia hemisphaerica | exon |
TCONS_00059203-exon-scaffold_319-1491911889:379760..381114 | TCONS_00059203-exon-scaffold_319-1491911889:379760..381114 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_319 | supercontig | scaffold_319:379760..384993 - |
Blast
The following BLAST results are available for this feature:
|