TCONS_00059261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059261
Unique NameTCONS_00059261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length498

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059261 ID=TCONS_00059261|Name=TCONS_00059261|organism=Clytia hemisphaerica|type=transcript|length=498bp
CCTAGGTGATTCATTACAAAGGAGTTAAATTAAAAGATACTAAAGaagaa
tttataaaaaatttcagtttttggACACTGTAAGCGGTTTaagatttttg
atgacgttatcCATGATATCTGTAGAGGTTTTTGCACCAGTCGAATTCAA
TTTTTCGGTTTTGATCAACTTCTCATTGATTTGTTCAAGCAGATCAGACG
TTCCTGGGATTGTGTAATCACCCAGGCTATACAAAAAACCTCCATCAATT
TTACGTTTAACTTGTTGATCAGGGCCATACCAAAGATCAATGATTTTCTT
TGAGTCATACTTCTTGAGGTTGTTAACGCCCGCTGAAGTTGGACATTTTC
GGATCTGTGCAACATAGGAATCAAGACTTGGAACAAATCGTTTTGCACCG
CCCCAGCGTGATTGGAATATCTTGCTTTTCTCCAACATGTCTGAAGTGAT
TCCAGTTTCCGAAGCATCTTTTTTGATTTCTGGAATTTTCTTCAAGTC
Run BLAST on NCBI

protein sequence of TCONS_00059261-protein

>TCONS_00059261-protein ID=TCONS_00059261-protein|Name=TCONS_00059261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=144bp
DLKKIPEIKKDASETGITSDMLEKSKIFQSRWGGAKRFVPSLDSYVAQIR
KCPTSAGVNNLKKYDSKKIIDLWYGPDQQVKRKIDGGFLYSLGDYTIPGT
SDLLEQINEKLIKTEKLNSTGAKTSTDIMDNVIKNLKPLTVSKN
Run BLAST on NCBI

transcript from alignment at scaffold_320:232675..233172

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059261 ID=TCONS_00059261|Name=TCONS_00059261|organism=Clytia hemisphaerica|type=transcript|length=498bp|location=Sequence derived from alignment at scaffold_320:232675..233172 (Clytia hemisphaerica)
GACTTGAAGAAAATTCCAGAAATCAAAAAAGATGCTTCGGAAACTGGAAT
CACTTCAGACATGTTGGAGAAAAGCAAGATATTCCAATCACGCTGGGGCG
GTGCAAAACGATTTGTTCCAAGTCTTGATTCCTATGTTGCACAGATCCGA
AAATGTCCAACTTCAGCGGGCGTTAACAACCTCAAGAAGTATGACTCAAA
GAAAATCATTGATCTTTGGTATGGCCCTGATCAACAAGTTAAACGTAAAA
TTGATGGAGGTTTTTTGTATAGCCTGGGTGATTACACAATCCCAGGAACG
TCTGATCTGCTTGAACAAATCAATGAGAAGTTGATCAAAACCGAAAAATT
GAATTCGACTGGTGCAAAAACCTCTACAGATATCATGgataacgtcatca
aaaatcttAAACCGCTTACAGTGTccaaaaactgaaattttttataaatt
cttCTTTAGTATCTTTTAATTTAACTCCTTTGTAATGAATCACCTAGG

Coding sequence (CDS) from alignment at scaffold_320:232675..233172

>TCONS_00059261 ID=TCONS_00059261|Name=TCONS_00059261|organism=Clytia hemisphaerica|type=CDS|length=435bp|location=Sequence derived from alignment at scaffold_320:232675..233172 (Clytia hemisphaerica)
GACTTGAAGAAAATTCCAGAAATCAAAAAAGATGCTTCGGAAACTGGAAT
CACTTCAGACATGTTGGAGAAAAGCAAGATATTCCAATCACGCTGGGGCG
GTGCAAAACGATTTGTTCCAAGTCTTGATTCCTATGTTGCACAGATCCGA
AAATGTCCAACTTCAGCGGGCGTTAACAACCTCAAGAAGTATGACTCAAA
GAAAATCATTGATCTTTGGTATGGCCCTGATCAACAAGTTAAACGTAAAA
TTGATGGAGGTTTTTTGTATAGCCTGGGTGATTACACAATCCCAGGAACG
TCTGATCTGCTTGAACAAATCAATGAGAAGTTGATCAAAACCGAAAAATT
GAATTCGACTGGTGCAAAAACCTCTACAGATATCATGgataacgtcatca
aaaatcttAAACCGCTTACAGTGTccaaaaactga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037314XLOC_037314Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059261-exon-scaffold_320-1491911889:232675..233172TCONS_00059261-exon-scaffold_320-1491911889:232675..233172Clytia hemisphaericaexon
TCONS_00059261-exon-scaffold_320-1510915933:232675..233172TCONS_00059261-exon-scaffold_320-1510915933:232675..233172Clytia hemisphaericaexon
TCONS_00059261-exon-scaffold_320-1575043694:232675..233172TCONS_00059261-exon-scaffold_320-1575043694:232675..233172Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059261-proteinTCONS_00059261-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_320supercontigscaffold_320:232675..233172 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.165549	0	0.157828	0	0	0	0.373118	0	0.489864	0.169576	94.426	376.275	1.01371	3.05498	0.260994	1.06684	0	0	2.67434	0.411321	0.882605	0	0.168329	0	2.77529	0.694108
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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