TCONS_00059298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059298
Unique NameTCONS_00059298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length462

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059298 ID=TCONS_00059298|Name=TCONS_00059298|organism=Clytia hemisphaerica|type=transcript|length=462bp
taagCTTTTTTATATTAATCTCTCTTAAACTTTAGCGAACAAATAGTTTA
GGAGACCAGATGTTACAATTTAAGGTGGGAAAATTGGAAATGCAAACTAA
AAGCCAAGGCTATCCAAAGAAAGATAATTATTGTTAGTAAAGTATTTGAG
ATCGAAATGCATGCTATTATCTCTCTTTAGATAGGATAAACCAAGAAAGA
ATTCGATACAGGGGCCCCCAGCGGTTCACATAAACATTCATATTTTGTGC
ATGAATACATGAATTTCCCCTCTTTTCCTCTGATTGTGTGCAGTTCTCCC
GATTTGCCAATGTTTCCCTGATCTTTCCAGAAAAACTactaattttctga
aaaatcaggttattgcgtgaaactcaataaaaatttatatgATTGCATGA
ATTGAGGGTTCGCTTTGGAAGGGGGGTCTCGCACAGTGTGTCCATAAAAA
TTGATATTGAAN
Run BLAST on NCBI

transcript from alignment at scaffold_324:140438..140899

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059298 ID=TCONS_00059298|Name=TCONS_00059298|organism=Clytia hemisphaerica|type=transcript|length=462bp|location=Sequence derived from alignment at scaffold_324:140438..140899 (Clytia hemisphaerica)
NTTCAATATCAATTTTTATGGACACACTGTGCGAGACCCCCCTTCCAAAG
CGAACCCTCAATTCATGCAATcatataaatttttattgagtttcacgcaa
taacctgatttttcagaaaattagtAGTTTTTCTGGAAAGATCAGGGAAA
CATTGGCAAATCGGGAGAACTGCACACAATCAGAGGAAAAGAGGGGAAAT
TCATGTATTCATGCACAAAATATGAATGTTTATGTGAACCGCTGGGGGCC
CCTGTATCGAATTCTTTCTTGGTTTATCCTATCTAAAGAGAGATAATAGC
ATGCATTTCGATCTCAAATACTTTACTAACAATAATTATCTTTCTTTGGA
TAGCCTTGGCTTTTAGTTTGCATTTCCAATTTTCCCACCTTAAATTGTAA
CATCTGGTCTCCTAAACTATTTGTTCGCTAAAGTTTAAGAGAGATTAATA
TAAAAAAGctta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037342XLOC_037342Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059298-exon-scaffold_324-1491911889:140438..140899TCONS_00059298-exon-scaffold_324-1491911889:140438..140899Clytia hemisphaericaexon
TCONS_00059298-exon-scaffold_324-1510915933:140438..140899TCONS_00059298-exon-scaffold_324-1510915933:140438..140899Clytia hemisphaericaexon
TCONS_00059298-exon-scaffold_324-1575043694:140438..140899TCONS_00059298-exon-scaffold_324-1575043694:140438..140899Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_324supercontigscaffold_324:140438..140899 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.94587	2.4348	2.83936	1.46664	8.19343	4.18415	9.67329	10.802	13.3928	8.02256	17.878	14.8275	10.0777	7.00233	6.27558	6.41974	6.68388	7.63767	13.6618	9.81943	9.39108	9.3488	4.16309	6.22065	15.4712	14.3774	29.7171	27.8484	10.1638	7.10373
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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