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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059300 ID=TCONS_00059300|Name=TCONS_00059300|organism=Clytia hemisphaerica|type=transcript|length=2637bp
gttaagaacattttttggcttaaaactcaaaaagttaagaacatcccaag
gcttcaaaaattttgattgttcttataaaagaaacgagCTTTAAGGTCTT
CTTCTTGAGGAAAGTAATTTGGGAAAGTTTACTCTgggaataaaaaattt
tcctgaaaatctACCCTTACTCACTTGAAAATCCGTTCAAAAAATAATCG
GAAAATTAAGAAGACAAATTGATATGCAAAAATACTTCAACTTCATCACT
TGATACTTATATCCCACagcatggatttattatagaaaCTCTgaataaac
atcgaatgaaacggtggagagcgaagtctttctattgtttcagaaaacaa
tcaatgtacaggctttgtccgcaaCTGTCAGCggggctcgaaggactctg
attttgaaaaatgattaacactcttttttctaaaaagttctctaactttt
tctgatcgtacttttgctggctaaaagtttgaaaataaatgctagaatac
caaacggatacatttatgaaatttggtgtgagaaaaacatcatcagacga
gtaaaatcaaacaaaatgtttataatgacacgaaattttgaattggatat
atctttccaatatttctccgaaaagagctgagattgacatatattagacg
tgagtctcatagctccactgtggtatgaaaatcttttggtggcacgtggt
ggcacggaagattttttgaggttgaagtttaaaaatttccggtgtcaata
tttaatttcttatacatagcatgtttttgcatctttctcgaaatttaaaa
cgtcataacgacgtataattagtaattaactagatgagtttgaatctcgg
aggaaaacttaaagtctcatttgggaattggatgagtgtattttgatgat
aaatgcaattaaaatgctacgaaaaatcatttaatggtggaaggagggtg
aacaataatttCATTaatgcggacaaggcttgtacatgagaaattgacAA
AGATCAACCATTCAGTTGTTTTCCactgtctataataattccatgccCAC
AGGTACCAACATTGATAATGACATTTATAATAAAAGCTTAATTAAAATTG
GCAATTTCTATTTAAGGAAGCAAAACGATAACTAATTAATATTTCCCATT
TTCTTAcgaaagacaaaaaagaaattcttacaAAGTTTGATAATATTTTG
TATATAATTTCCACAAAAGTTTCTCATCACCGTTACtcaatttcttcatt
tcttcaattctttgaatCTCATTTTTCTTCAAAGTGACGTACACTTCAAT
AAACTCTTCCCCAAACTCCTTGACAAACAATTCATCTTCCTGAAAACAAC
GCAATGCTTCATCCAAAGTTTTTGGGATATCAAAATAAGGGCTACATTCA
GGTTCGTTATCGACTATACCATCATGAGCAGGATCTGTGAGCTGAAGGCC
TCTTTTCAATCCGTCCATACCAGCAATAAGTAACCCTGCCGTGTATAAAT
ATGGATTGACTGCAGATGTCGGTTGACGATGCTCAATGAGGGTGGATTTC
TCGTTGATGACTTTGACACGGTAGCCTGCTGTACGATTATCATACCCCCA
TGCAGTATTCATCCCCATCATCGGTTTGAATTCTTCTTGAAAATGATGAT
AACAATTGTAGGTCGGCATCGCTAAACATAACAATGCTTTTGAATGTGCT
TTCAACCCAGCCAAccaattttgacctttttcagAAAGCTTGTGTGAATT
GGCTGCATCGTAAAATACGTTTGTCTTCTCAGTGAGACTCCATAAAGAGT
GATTGAAATTCGAAGTCGATTTATATTCATCTTTGAAAGGTGTAGTCATA
AAAAGAGCTTCAACTCCCTCTTTTCTACATACCTCTTTGACAGTAGAGCG
GTATCGAATGGCATTATCAGGGCCTTTGATTCCAAAACTTGGTTTAAAGG
TAATCTCAAACATTGAAGGCGCACATTCCATGTGAAACTTTTCAGGAAAG
ACTCCAATCTTCTTCAAAGAATACATAATTTGACTTGCGATTCCAAATTT
CTCCTCATTAAACAATGTAGATACAAAATTATCTGTTTCATCTAAAGGTT
TTAATGTTTCTTTGTTAACAACATAGTATTCATATTCTGATGCCGATTTT
AATTCAAATCCTAATTGGTTCAGTTTCCGGAATTGCTGCTTACAGATTGA
TCTTGTGTGGAAGTTCGATGTATTCAAATCTCCAAAGGTTGTGCTCAGAT
CACATATGGCAGATGCTACATTGGTTCTCCAGGGAAGCTTCTTGAATGTG
GATAAATCAGGATACAAGGCTCCATTACCGTAGGTGGTTCCTGAATCAAG
GATTTTGTTGCTGACATGTTTACCATCAAAATCGATACATCCAATAAGGC
CAAGAGGAAAACCAAAACCTTCTTTAGCATTCTCTAAAAAATAATCAGCA
TCGAGTAATATTCCTCTTGATACACTGTTGATGTCTTCTGTTTCAAGACG
GACGAAATGAATTTGTTCTTTAGTGATTGACTCAGATATTTCTTGGTATA
AGTTCCCGTTGGTTATTCCGTCTTTGGTATCCATTTTTTAGAATTATCCT
GTTTATGAAGGTGAGATAGAACATTAGAGCTCTTGTG Run BLAST on NCBI transcript from alignment at scaffold_325:35226..37946+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059300 ID=TCONS_00059300|Name=TCONS_00059300|organism=Clytia hemisphaerica|type=transcript|length=2721bp|location=Sequence derived from alignment at scaffold_325:35226..37946+ (Clytia hemisphaerica)
gttaagaacattttttggcttaaaactcaaaaagttaagaacatcccaag
gcttcaaaaattttgattgttcttataaaagaaacgagCTTTAAGGTCTT
CTTCTTGAGGAAAGTAATTTGGGAAAGTTTACTCTgggaataaaaaattt
tcctgaaaatctACCCTTACTCACTTGAAAATCCGTTCAAAAAATAATCG
GAAAATTAAGAAGACAAATTGATATGCAAAAATACTTCAACTTCATCACT
TGATACTTATATCCCACagcatggatttattatagaaaCTCTgaataaac
atcgaatgaaacggtggagagcgaagtctttctattgtttcagaaaacaa
tcaatgtacaggctttgtccgcaaCTGTCAGCggggctcgaaggactctg
attttgaaaaatgattaacactcttttttctaaaaagttctctaactttt
tctgatcgtacttttgctggctaaaagtttgaaaataaatgctagaatac
caaacggatacatttatgaaatttggtgtgagaaaaacatcatcagacga
gtaaaatcaaacaaaatgtttataatgacacgaaattttgaattggatat
atctttccaatatttctccgaaaagagctgagattgacatatattagacg
tgagtctcatagctccactgtggtatgaaaatcttttggtggcacgtggt
ggcacggaagattttttgaggttgaagtttaaaaatttccggtgtcaata
tttaatttcttatacatagcatgtttttgcatctttctcgaaatttaaaa
cgtcataacgacgtataattagtaattaactagatgagtttgaatctcgg
aggaaaacttaaagtctcatttgggaattggatgagtgtattttgatgat
aaatgcaattaaaatgctacgaaaaatcatttaatggtggaaggagggtg
aacaataatttCATTaatgcggacaaggcttgtacatgagaaattgacAA
AGATCAACCATTGTTTTCCactgtctataataattccatgccCACAGGTA
CCAACATtgatggctgcgtttagaccagcctggcatttgtaattNGCAGT
TGTTTTCCactgtctataataattccatgccCACAGGTACCAACATTGAT
AATGACATTTATAATAAAAGCTTAATTAAAATTGGCAATTTCTATTTAAG
GAAGCAAAACGATAACTAATTAATATTTCCCATTTTCTTAcgaaagacaa
aaaagaaattcttacaAAGTTTGATAATATTTTGTATATAATTTCCACAA
AAGTTTCTCATCACCGTTACtcaatttcttcatttcttcaattctttgaa
tCTCATTTTTCTTCAAAGTGACGTACACTTCAATAAACTCTTCCCCAAAC
TCCTTGACAAACAATTCATCTTCCTGAAAACAACGCAATGCTTCATCCAA
AGTTTTTGGGATATCAAAATAAGGGCTACATTCAGGTTCGTTATCGACTA
TACCATCATGAGCAGGATCTGTGAGCTGAAGGCCTCTTTTCAATCCGTCC
ATACCAGCAATAAGTAACCCTGCCGTGTATAAATATGGATTGACTGCAGA
TGTCGGTTGACGATGCTCAATGAGGGTGGATTTCTCGTTGATGACTTTGA
CACGGTAGCCTGCTGTACGATTATCATACCCCCATGCAGTATTCATCCCC
ATCATCGGTTTGAATTCTTCTTGAAAATGATGATAACAATTGTAGGTCGG
CATCGCTAAACATAACAATGCTTTTGAATGTGCTTTCAACCCAGCCAAcc
aattttgacctttttcagAAAGCTTGTGTGAATTGGCTGCATCGTAAAAT
ACGTTTGTCTTCTCAGTGAGACTCCATAAAGAGTGATTGAAATTCGAAGT
CGATTTATATTCATCTTTGAAAGGTGTAGTCATAAAAAGAGCTTCAACTC
CCTCTTTTCTACATACCTCTTTGACAGTAGAGCGGTATCGAATGGCATTA
TCAGGGCCTTTGATTCCAAAACTTGGTTTAAAGGTAATCTCAAACATTGA
AGGCGCACATTCCATGTGAAACTTTTCAGGAAAGACTCCAATCTTCTTCA
AAGAATACATAATTTGACTTGCGATTCCAAATTTCTCCTCATTAAACAAT
GTAGATACAAAATTATCTGTTTCATCTAAAGGTTTTAATGTTTCTTTGTT
AACAACATAGTATTCATATTCTGATGCCGATTTTAATTCAAATCCTAATT
GGTTCAGTTTCCGGAATTGCTGCTTACAGATTGATCTTGTGTGGAAGTTC
GATGTATTCAAATCTCCAAAGGTTGTGCTCAGATCACATATGGCAGATGC
TACATTGGTTCTCCAGGGAAGCTTCTTGAATGTGGATAAATCAGGATACA
AGGCTCCATTACCGTAGGTGGTTCCTGAATCAAGGATTTTGTTGCTGACA
TGTTTACCATCAAAATCGATACATCCAATAAGGCCAAGAGGAAAACCAAA
ACCTTCTTTAGCATTCTCTAAAAAATAATCAGCATCGAGTAATATTCCTC
TTGATACACTGTTGATGTCTTCTGTTTCAAGACGGACGAAATGAATTTGT
TCTTTAGTGATTGACTCAGATATTTCTTGGTATAAGTTCCCGTTGGTTAT
TCCGTCTTTGGTATCCATTTTTTAGAATTATCCTGTTTATGAAGGTGAGA
TAGAACATTAGAGCTCTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059300-exon-scaffold_325-1491911889:35226..36237 | TCONS_00059300-exon-scaffold_325-1491911889:35226..36237 | Clytia hemisphaerica | exon |
| TCONS_00059300-exon-scaffold_325-1510915933:35226..36237 | TCONS_00059300-exon-scaffold_325-1510915933:35226..36237 | Clytia hemisphaerica | exon |
| TCONS_00059300-exon-scaffold_325-1575043694:35226..36237 | TCONS_00059300-exon-scaffold_325-1575043694:35226..36237 | Clytia hemisphaerica | exon |
| TCONS_00059300-exon-scaffold_325-1491911889:36322..37946 | TCONS_00059300-exon-scaffold_325-1491911889:36322..37946 | Clytia hemisphaerica | exon |
| TCONS_00059300-exon-scaffold_325-1510915933:36322..37946 | TCONS_00059300-exon-scaffold_325-1510915933:36322..37946 | Clytia hemisphaerica | exon |
| TCONS_00059300-exon-scaffold_325-1575043694:36322..37946 | TCONS_00059300-exon-scaffold_325-1575043694:36322..37946 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_325 | supercontig | scaffold_325:35226..37946 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004356 | glutamate-ammonia ligase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006807 | nitrogen compound metabolic process |
| GO:0006542 | glutamine biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006542 |
glutamine biosynthetic process |
| biological_process |
GO:0006807 |
nitrogen compound metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004356 |
glutamate-ammonia ligase activity |
Blast
BLAST of TCONS_00059300 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 6.872e-58 Identity = 141/438 (32.19%), Postives = 209/438 (47.72%), Query Frame = -3
Query: 1253 QEISESITKEQIHFVRLETEDINSVSRGILLDADYFLENAKEGFGFPLGLIGCIDFDGKHVSNKILDSGTTYGNG-ALYPDLSTFKKLPWRTNVASAICDLSTTFGD-LNTSNFHTRSICKQQFRKLNQLGFELKSASEYEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKFHMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEG-VEALFMTTPFKDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKALLCLAMPTYNCYHHFQEEFKPM-MGMNTAWGYDNRTAGYRVKVINEKSTLIEHRQPTSAVNPYLYTAGLLIAGMDGLKRG---LQLTDPAHDGIVDNEPECSPYFDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRIE 2545
+ I +++ K ++ FVR E D++ VSR + A +F E G P G + I + N I T + + L P+LSTF+ LPW A ICD T G+ L TS R I K+Q L GF L SA Y++ + + T N +++ L G E F P EI+F P FGI DNA R+ VKEV RK + + F+ T F D + +HSLW + K N+F + + +L+ G+ WLAGL HS AL CL P+ +C + ++ K + + T WGY++ + + +K EK T IE++ ++ NPYL A + AG+DGL L D + D EP +IP L++AL +ED+ + GE FI +V +KK E++ E
Sbjct: 74 KHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNI--RATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS---PRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTD-FYQVEPS-----EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEE 496
The following BLAST results are available for this feature:
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