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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059301 ID=TCONS_00059301|Name=TCONS_00059301|organism=Clytia hemisphaerica|type=transcript|length=2715bp
AATTACACTTATTTTGAATATGAAATCTTTTCTGATAATTCTAAAAAATG
GATACCAAAGACGGAATAACCAACGGGAACTTATACCAAGAAATATCTGA
GTCAATCACTAAAGAACAAATTCATTTCGTCCGTCTTGAAACAGAAGACA
TCAACAGTGTATCAAGAGGAATATTACTCGATGCTGATTATTTTTTAGAG
AATGCTAAAGAAGGTTTTGGTTTTCCTCTTGGCCTTATTGGATGTATCGA
TTTTGATGGTAAACATGTCAGCAACAAAATCCTTGATTCAGGAACCACCT
ACGGTAATGGAGCCTTGTATCCTGATTTATCCACATTCAAGAAGCTTCCC
TGGAGAACCAATGTAGCATCTGCCATATGTGATCTGAGCACAACCTTTGG
AGATTTGAATACATCGAACTTCCACACAAGATCAATCTGTAAGCAGCAAT
TCCGGAAACTGAACCAATTAGGATTTGAATTAAAATCGGCATCAGAATAT
GAATACTATGTTGTTAACAAAGAAACATTAAAACCTTTAGATGAAACAGA
TAATTTTGTATCTACATTGTTTAATGAGGAGAAATTTGGAATCGCAAGTC
AAATTATGTATTCTTTGAAGAAGATTGGAGTCTTTCCTGAAAAGTTTCAC
ATGGAATGTGCGCCTTCAATGTTTGAGATTACCTTTAAACCAAGTTTTGG
AATCAAAGGCCCTGATAATGCCATTCGATACCGCTCTACTGTCAAAGAGG
TATGTAGAAAAGAGGGAGTTGAAGCTCTTTTTATGACTACACCTTTCAAA
GATGAATATAAATCGACTTCGAATTTCAATCACTCTTTATGGAGTCTCAC
TGAGAAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTTctg
aaaaaggtcaaaattggTTGGCTGGGTTGAAAGCACATTCAAAAGCATTG
TTATGTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGAAGA
ATTCAAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATCGTA
CAGCAGGCTACCGTGTCAAAGTCATCAACGAGAAATCCACCCTCATTGAG
CATCGTCAACCGACATCTGCAGTCAATCCATATTTATACACGGCAGGGTT
ACTTATTGCTGGTATGGACGGATTGAAAAGAGGCCTTCAGCTCACAGATC
CTGCTCATGATGGTATAGTCGATAACGAACCTGAATGTAGCCCTTATTTT
GATATCCCAAAAACTTTGGATGAAGCATTGCGTTGTTTTCAGGAAGATGA
ATTGTTTGTCAAGGAGTTTGGGGAAGAGTTTATTGAAGTGTACGTCACTT
TGAAGAAAAATGAGattcaaagaattgaagaaatgaagaaattgaGTAAC
GGTGATGAGAAACTTTTGTGGAAATTATATACAAAATATTATCAAACTTt
gtaagaatttcttttttgtctttcgTAAGAAAATGGGAAATATTAATTAG
TTATCGTTTTGCTTCCTTAAATAGAAATTGCCAATTTTAATTAAGCTTTT
ATTATAAATGTCATTATCAATGTTGGTACCTGTGggcatggaattattat
agacagtGGAAAACAACTGCNaattacaaatgccaggctggtctaaacgc
agccatcaATGTTGGTACCTGTGggcatggaattattatagacagtGGAA
AACAATGGTTGATCTTTgtcaatttctcatgtacaagccttgtccgcatt
AATGaaattattgttcaccctccttccaccattaaatgatttttcgtagc
attttaattgcatttatcatcaaaatacactcatccaattcccaaatgag
actttaagttttcctccgagattcaaactcatctagttaattactaatta
tacgtcgttatgacgttttaaatttcgagaaagatgcaaaaacatgctat
gtataagaaattaaatattgacaccggaaatttttaaacttcaacctcaa
aaaatcttccgtgccaccacgtgccaccaaaagattttcataccacagtg
gagctatgagactcacgtctaatatatgtcaatctcagctcttttcggag
aaatattggaaagatatatccaattcaaaatttcgtgtcattataaacat
tttgtttgattttactcgtctgatgatgtttttctcacaccaaatttcat
aaatgtatccgtttggtattctagcatttattttcaaacttttagccagc
aaaagtacgatcagaaaaagttagagaactttttagaaaaaagagtgtta
atcatttttcaaaatcagagtccttcgagccccGCTGACAGttgcggaca
aagcctgtacattgattgttttctgaaacaatagaaagacttcgctctcc
accgtttcattcgatgtttattcAGAGtttctataataaatccatgctGT
GGGATATAAGTATCAAGTGATGAAGTTGAAGTATTTTTGCATATCAATTT
GTCTTCTTAATTTTCCGATTATTTTTTGAACGGATTTTCAAGTGAGTAAG
GGTagattttcaggaaaattttttattcccAGAGTAAACTTTCCCAAATT
ACTTTCCTCAAGAAGAAGACCTTAAAGctcgtttcttttataagaacaat
caaaatttttgaagccttgggatgttcttaactttttgagttttaagcca
aaaaatgttcttaac Run BLAST on NCBI protein sequence of TCONS_00059301-protein >TCONS_00059301-protein ID=TCONS_00059301-protein|Name=TCONS_00059301-protein|organism=Clytia hemisphaerica|type=polypeptide|length=468bp
MDTKDGITNGNLYQEISESITKEQIHFVRLETEDINSVSRGILLDADYFL
ENAKEGFGFPLGLIGCIDFDGKHVSNKILDSGTTYGNGALYPDLSTFKKL
PWRTNVASAICDLSTTFGDLNTSNFHTRSICKQQFRKLNQLGFELKSASE
YEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKF
HMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEGVEALFMTTPF
KDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKA
LLCLAMPTYNCYHHFQEEFKPMMGMNTAWGYDNRTAGYRVKVINEKSTLI
EHRQPTSAVNPYLYTAGLLIAGMDGLKRGLQLTDPAHDGIVDNEPECSPY
FDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRIEEMKKLS
NGDEKLLWKLYTKYYQTL Run BLAST on NCBI transcript from alignment at scaffold_325:35226..38305- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059301 ID=TCONS_00059301|Name=TCONS_00059301|organism=Clytia hemisphaerica|type=transcript|length=3080bp|location=Sequence derived from alignment at scaffold_325:35226..38305- (Clytia hemisphaerica)
AATTACACTTATTTTGAATATGAAATCTTTTCTGTAAGTAATTTTCTAGA
TATTTTATATTTGCCATCTATATCCAGCTATGATTTAGGCTGCTGGCATC
CATTAAAGAATTCGTGCTCCTATACTACCTGGGGTTTTGTAGAGGTCTGC
AATTCAGACTAGCTATGATATAAATTCTGGCTTAATTAGCAGATCAACAT
CCTACATTGGTATTGGTAGCCTAGTTTGCAATAGTTTTTGTTTGCTGACG
TCAGCCACTTGCTGAACAATTCTTATATTATAAAGTTTTATCCACATTCG
TAATTTTACTGACAACAAACTTGTGGACTTTCTAGTATACTTTTTTTCAG
GTTACCCCGCACAAGAGCTCTAATGTTCTATCTCACCTTCATAAACAGGA
TAATTCTAAAAAATGGATACCAAAGACGGAATAACCAACGGGAACTTATA
CCAAGAAATATCTGAGTCAATCACTAAAGAACAAATTCATTTCGTCCGTC
TTGAAACAGAAGACATCAACAGTGTATCAAGAGGAATATTACTCGATGCT
GATTATTTTTTAGAGAATGCTAAAGAAGGTTTTGGTTTTCCTCTTGGCCT
TATTGGATGTATCGATTTTGATGGTAAACATGTCAGCAACAAAATCCTTG
ATTCAGGAACCACCTACGGTAATGGAGCCTTGTATCCTGATTTATCCACA
TTCAAGAAGCTTCCCTGGAGAACCAATGTAGCATCTGCCATATGTGATCT
GAGCACAACCTTTGGAGATTTGAATACATCGAACTTCCACACAAGATCAA
TCTGTAAGCAGCAATTCCGGAAACTGAACCAATTAGGATTTGAATTAAAA
TCGGCATCAGAATATGAATACTATGTTGTTAACAAAGAAACATTAAAACC
TTTAGATGAAACAGATAATTTTGTATCTACATTGTTTAATGAGGAGAAAT
TTGGAATCGCAAGTCAAATTATGTATTCTTTGAAGAAGATTGGAGTCTTT
CCTGAAAAGTTTCACATGGAATGTGCGCCTTCAATGTTTGAGATTACCTT
TAAACCAAGTTTTGGAATCAAAGGCCCTGATAATGCCATTCGATACCGCT
CTACTGTCAAAGAGGTATGTAGAAAAGAGGGAGTTGAAGCTCTTTTTATG
ACTACACCTTTCAAAGATGAATATAAATCGACTTCGAATTTCAATCACTC
TTTATGGAGTCTCACTGAGAAGACAAACGTATTTTACGATGCAGCCAATT
CACACAAGCTTTCTGAAAAAGGTCAAAATTGGTTGGCTGGGTTGAAAGCA
CATTCAAAAGCATTGTTATGTTTAGCGATGCCGACCTACAATTGTTATCA
TCATTTTCAAGAAGAATTCAAACCGATGATGGGGATGAATACTGCATGGG
GGTATGATAATCGTACAGCAGGCTACCGTGTCAAAGTCATCAACGAGAAA
TCCACCCTCATTGAGCATCGTCAACCGACATCTGCAGTCAATCCATATTT
ATACACGGCAGGGTTACTTATTGCTGGTATGGACGGATTGAAAAGAGGCC
TTCAGCTCACAGATCCTGCTCATGATGGTATAGTCGATAACGAACCTGAA
TGTAGCCCTTATTTTGATATCCCAAAAACTTTGGATGAAGCATTGCGTTG
TTTTCAGGAAGATGAATTGTTTGTCAAGGAGTTTGGGGAAGAGTTTATTG
AAGTGTACGTCACTTTGAAGAAAAATGAGATTCAAAGAATTGAAGAAATG
AAGAAATTGAGTAACGGTGATGAGAAACTTTTGTGGAAATTATATACAAA
ATATTATCAAACTTTGTAAGAATTTCTTTTTTGTCTTTCGTAAGAAAATG
GGAAATATTAATTAGTTATCGTTTTGCTTCCTTAAATAGAAATTGCCAAT
TTTAATTAAGCTTTTATTATAAATGTCATTATCAATGTTGGTACCTGTGG
GCATGGAATTATTATAGACAGTGGAAAACAACTGCNAATTACAAATGCCA
GGCTGGTCTAAACGCAGCCATCAATGTTGGTACCTGTGGGCATGGAATTA
TTATAGACAGTGGAAAACAATGGTTGATCTTTGTCAATTTCTCATGTACA
AGCCTTGTCCGCATTAATGAAATTATTGTTCACCCTCCTTCCACCATTAA
ATGATTTTTCGTAGCATTTTAATTGCATTTATCATCAAAATACACTCATC
CAATTCCCAAATGAGACTTTAAGTTTTCCTCCGAGATTCAAACTCATCTA
GTTAATTACTAATTATACGTCGTTATGACGTTTTAAATTTCGAGAAAGAT
GCAAAAACATGCTATGTATAAGAAATTAAATATTGACACCGGAAATTTTT
AAACTTCAACCTCAAAAAATCTTCCGTGCCACCACGTGCCACCAAAAGAT
TTTCATACCACAGTGGAGCTATGAGACTCACGTCTAATATATGTCAATCT
CAGCTCTTTTCGGAGAAATATTGGAAAGATATATCCAATTCAAAATTTCG
TGTCATTATAAACATTTTGTTTGATTTTACTCGTCTGATGATGTTTTTCT
CACACCAAATTTCATAAATGTATCCGTTTGGTATTCTAGCATTTATTTTC
AAACTTTTAGCCAGCAAAAGTACGATCAGAAAAAGTTAGAGAACTTTTTA
GAAAAAAGAGTGTTAATCATTTTTCAAAATCAGAGTCCTTCGAGCCCCGC
TGACAGTTGCGGACAAAGCCTGTACATTGATTGTTTTCTGAAACAATAGA
AAGACTTCGCTCTCCACCGTTTCATTCGATGTTTATTCAGAGTTTCTATA
ATAAATCCATGCTGTGGGATATAAGTATCAAGTGATGAAGTTGAAGTATT
TTTGCATATCAATTTGTCTTCTTAATTTTCCGATTATTTTTTGAACGGAT
TTTCAAGTGAGTAAGGGTAGATTTTCAGGAAAATTTTTTATTCCCAGAGT
AAACTTTCCCAAATTACTTTCCTCAAGAAGAAGACCTTAAAGCTCGTTTC
TTTTATAAGAACAATCAAAATTTTTGAAGCCTTGGGATGTTCTTAACTTT
TTGAGTTTTAAGCCAAAAAATGTTCTTAAC Coding sequence (CDS) from alignment at scaffold_325:35226..38305- >TCONS_00059301 ID=TCONS_00059301|Name=TCONS_00059301|organism=Clytia hemisphaerica|type=CDS|length=1407bp|location=Sequence derived from alignment at scaffold_325:35226..38305- (Clytia hemisphaerica)
ATGGATACCAAAGACGGAATAACCAACGGGAACTTATACCAAGAAATATC
TGAGTCAATCACTAAAGAACAAATTCATTTCGTCCGTCTTGAAACAGAAG
ACATCAACAGTGTATCAAGAGGAATATTACTCGATGCTGATTATTTTTTA
GAGAATGCTAAAGAAGGTTTTGGTTTTCCTCTTGGCCTTATTGGATGTAT
CGATTTTGATGGTAAACATGTCAGCAACAAAATCCTTGATTCAGGAACCA
CCTACGGTAATGGAGCCTTGTATCCTGATTTATCCACATTCAAGAAGCTT
CCCTGGAGAACCAATGTAGCATCTGCCATATGTGATCTGAGCACAACCTT
TGGAGATTTGAATACATCGAACTTCCACACAAGATCAATCTGTAAGCAGC
AATTCCGGAAACTGAACCAATTAGGATTTGAATTAAAATCGGCATCAGAA
TATGAATACTATGTTGTTAACAAAGAAACATTAAAACCTTTAGATGAAAC
AGATAATTTTGTATCTACATTGTTTAATGAGGAGAAATTTGGAATCGCAA
GTCAAATTATGTATTCTTTGAAGAAGATTGGAGTCTTTCCTGAAAAGTTT
CACATGGAATGTGCGCCTTCAATGTTTGAGATTACCTTTAAACCAAGTTT
TGGAATCAAAGGCCCTGATAATGCCATTCGATACCGCTCTACTGTCAAAG
AGGTATGTAGAAAAGAGGGAGTTGAAGCTCTTTTTATGACTACACCTTTC
AAAGATGAATATAAATCGACTTCGAATTTCAATCACTCTTTATGGAGTCT
CACTGAGAAGACAAACGTATTTTACGATGCAGCCAATTCACACAAGCTTT
CTGAAAAAGGTCAAAATTGGTTGGCTGGGTTGAAAGCACATTCAAAAGCA
TTGTTATGTTTAGCGATGCCGACCTACAATTGTTATCATCATTTTCAAGA
AGAATTCAAACCGATGATGGGGATGAATACTGCATGGGGGTATGATAATC
GTACAGCAGGCTACCGTGTCAAAGTCATCAACGAGAAATCCACCCTCATT
GAGCATCGTCAACCGACATCTGCAGTCAATCCATATTTATACACGGCAGG
GTTACTTATTGCTGGTATGGACGGATTGAAAAGAGGCCTTCAGCTCACAG
ATCCTGCTCATGATGGTATAGTCGATAACGAACCTGAATGTAGCCCTTAT
TTTGATATCCCAAAAACTTTGGATGAAGCATTGCGTTGTTTTCAGGAAGA
TGAATTGTTTGTCAAGGAGTTTGGGGAAGAGTTTATTGAAGTGTACGTCA
CTTTGAAGAAAAATGAGATTCAAAGAATTGAAGAAATGAAGAAATTGAGT
AACGGTGATGAGAAACTTTTGTGGAAATTATATACAAAATATTATCAAAC
TTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059301-exon-scaffold_325-1575043694:38273..38305 | TCONS_00059301-exon-scaffold_325-1575043694:38273..38305 | Clytia hemisphaerica | exon |
| TCONS_00059301-exon-scaffold_325-1575043694:35226..37907 | TCONS_00059301-exon-scaffold_325-1575043694:35226..37907 | Clytia hemisphaerica | exon |
| TCONS_00059301-exon-scaffold_325-1510915933:38273..38305 | TCONS_00059301-exon-scaffold_325-1510915933:38273..38305 | Clytia hemisphaerica | exon |
| TCONS_00059301-exon-scaffold_325-1510915933:35226..37907 | TCONS_00059301-exon-scaffold_325-1510915933:35226..37907 | Clytia hemisphaerica | exon |
| TCONS_00059301-exon-scaffold_325-1491911889:38273..38305 | TCONS_00059301-exon-scaffold_325-1491911889:38273..38305 | Clytia hemisphaerica | exon |
| TCONS_00059301-exon-scaffold_325-1491911889:35226..37907 | TCONS_00059301-exon-scaffold_325-1491911889:35226..37907 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_325 | supercontig | scaffold_325:35226..38305 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004356 | glutamate-ammonia ligase activity |
| GO:0003824 | catalytic activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006807 | nitrogen compound metabolic process |
| GO:0006542 | glutamine biosynthetic process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006542 |
glutamine biosynthetic process |
| biological_process |
GO:0006807 |
nitrogen compound metabolic process |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0004356 |
glutamate-ammonia ligase activity |
Blast
BLAST of TCONS_00059301 vs. Swiss-Prot (Human)
Match: LGSN (Lengsin OS=Homo sapiens GN=LGSN PE=1 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 7.881e-58 Identity = 141/438 (32.19%), Postives = 209/438 (47.72%), Query Frame = 3
Query: 87 QEISESITKEQIHFVRLETEDINSVSRGILLDADYFLENAKEGFGFPLGLIGCIDFDGKHVSNKILDSGTTYGNG-ALYPDLSTFKKLPWRTNVASAICDLSTTFGD-LNTSNFHTRSICKQQFRKLNQLGFELKSASEYEYYVVNKETLKPLDETDNFVSTLFNEEKFGIASQIMYSLKKIGVFPEKFHMECAPSMFEITFKPSFGIKGPDNAIRYRSTVKEVCRKEG-VEALFMTTPFKDEYKSTSNFNHSLWSLTEKTNVFYDAANSHKLSEKGQNWLAGLKAHSKALLCLAMPTYNCYHHFQEEFKPM-MGMNTAWGYDNRTAGYRVKVINEKSTLIEHRQPTSAVNPYLYTAGLLIAGMDGLKRG---LQLTDPAHDGIVDNEPECSPYFDIPKTLDEALRCFQEDELFVKEFGEEFIEVYVTLKKNEIQRIE 1379
+ I +++ K ++ FVR E D++ VSR + A +F E G P G + I + N I T + + L P+LSTF+ LPW A ICD T G+ L TS R I K+Q L GF L SA Y++ + + T N +++ L G E F P EI+F P FGI DNA R+ VKEV RK + + F+ T F D + +HSLW + K N+F + + +L+ G+ WLAGL HS AL CL P+ +C + ++ K + + T WGY++ + + +K EK T IE++ ++ NPYL A + AG+DGL L D + D EP +IP L++AL +ED+ + GE FI +V +KK E++ E
Sbjct: 74 KHIRQAMAKNRLQFVRFEATDLHGVSRSKTIPAHFFQEKVSHGVCMPRGYLEVIPNPKDNEMNNI--RATCFNSDIVLMPELSTFRVLPWADRTARVICDTFTVTGEPLLTS---PRYIAKRQLSHLQASGFSLLSAFIYDFCIFGVPEILNSKIISFPALTFLNNHDQPFMQELVDGLYHTGANVESFSSSTRPGQMEISFLPEFGISSADNAFTLRTGVKEVARKYNYIASFFIETGFCD----SGILSHSLWDVDRKKNMFCSTSGTEQLTITGKKWLAGLLKHSAALSCLMAPSVSCRKRYSKDRKDLKKSVPTTWGYNDNSCIFNIKCHGEKGTRIENKLGSATANPYLVLAATVAAGLDGLHSSNEVLAGPDESTD-FYQVEPS-----EIPLKLEDALVALEEDQCLRQALGETFIRYFVAMKKYELENEE 496
The following BLAST results are available for this feature:
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