TCONS_00005960 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005960
Unique NameTCONS_00005960
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length603

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005960 ID=TCONS_00005960|Name=TCONS_00005960|organism=Clytia hemisphaerica|type=transcript|length=603bp
GACCAGCCCAGATTCGCAAAAATGGGCAGCCGCAATGGATGATGAAATTA
AATCGTTACAACTCAACAACACCTACACGTTAACCGAACCGCCTGAGAAC
AAATCAATTGTTGGTGGAAAATGGGTTTATCACATCAAAGGAAATCCAGA
TTCTCCGATCTACAAAGCCAGATTCGTTGCCAAGGGATATTCTCAGATCC
AAGGGATTGATTATACCGAAACGTTCTCTCCGACAGCCCGCATGGAATCG
GTCCGTACCATAATGCAAATCGCCATACAGAACGATCTAGTACTCCATCA
AATGGATGTCAAGAGTGCTTACCTTCACGTTCCAATCGATGAGGACGTAT
ATGTTACTCCACCGGAAGGATATGAACCCGTCAATAAAGTGTGGAAGTTG
AACAAGTCGCTTTACGGATTAAAACAGAGCGGTCGTAACTGGCACACTCT
TGTACACAATTATCTCATTAACGAACTATCCTTCAAGCAATCATCAGCAG
ACCCATGCGTCTATTTTCAACAGGGTGGAACCGCCATCCTACTCGTTTGG
GTAGACGACATTATTATCGCCACACGTACCGAGTCCCACATGGCACAACT
GAA
Run BLAST on NCBI

protein sequence of TCONS_00005960-protein

>TCONS_00005960-protein ID=TCONS_00005960-protein|Name=TCONS_00005960-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
TSPDSQKWAAAMDDEIKSLQLNNTYTLTEPPENKSIVGGKWVYHIKGNPD
SPIYKARFVAKGYSQIQGIDYTETFSPTARMESVRTIMQIAIQNDLVLHQ
MDVKSAYLHVPIDEDVYVTPPEGYEPVNKVWKLNKSLYGLKQSGRNWHTL
VHNYLINELSFKQSSADPCVYFQQGGTAILLVWVDDIIIATRTESHMAQL
Run BLAST on NCBI

transcript from alignment at sc0000061:298284..298886

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005960 ID=TCONS_00005960|Name=TCONS_00005960|organism=Clytia hemisphaerica|type=transcript|length=603bp|location=Sequence derived from alignment at sc0000061:298284..298886 (Clytia hemisphaerica)
TTCAGTTGTGCCATGTGGGACTCGGTACGTGTGGCGATAATAATGTCGTC
TACCCAAACGAGTAGGATGGCGGTTCCACCCTGTTGAAAATAGACGCATG
GGTCTGCTGATGATTGCTTGAAGGATAGTTCGTTAATGAGATAATTGTGT
ACAAGAGTGTGCCAGTTACGACCGCTCTGTTTTAATCCGTAAAGCGACTT
GTTCAACTTCCACACTTTATTGACGGGTTCATATCCTTCCGGTGGAGTAA
CATATACGTCCTCATCGATTGGAACGTGAAGGTAAGCACTCTTGACATCC
ATTTGATGGAGTACTAGATCGTTCTGTATGGCGATTTGCATTATGGTACG
GACCGATTCCATGCGGGCTGTCGGAGAGAACGTTTCGGTATAATCAATCC
CTTGGATCTGAGAATATCCCTTGGCAACGAATCTGGCTTTGTAGATCGGA
GAATCTGGATTTCCTTTGATGTGATAAACCCATTTTCCACCAACAATTGA
TTTGTTCTCAGGCGGTTCGGTTAACGTGTAGGTGTTGTTGAGTTGTAACG
ATTTAATTTCATCATCCATTGCGGCTGCCCATTTTTGCGAATCTGGGCTG
GTC

Coding sequence (CDS) from alignment at sc0000061:298284..298886

>TCONS_00005960 ID=TCONS_00005960|Name=TCONS_00005960|organism=Clytia hemisphaerica|type=CDS|length=600bp|location=Sequence derived from alignment at sc0000061:298284..298886 (Clytia hemisphaerica)
CAGTTGTGCCATGTGGGACTCGGTACGTGTGGCGATAATAATGTCGTCTA
CCCAAACGAGTAGGATGGCGGTTCCACCCTGTTGAAAATAGACGCATGGG
TCTGCTGATGATTGCTTGAAGGATAGTTCGTTAATGAGATAATTGTGTAC
AAGAGTGTGCCAGTTACGACCGCTCTGTTTTAATCCGTAAAGCGACTTGT
TCAACTTCCACACTTTATTGACGGGTTCATATCCTTCCGGTGGAGTAACA
TATACGTCCTCATCGATTGGAACGTGAAGGTAAGCACTCTTGACATCCAT
TTGATGGAGTACTAGATCGTTCTGTATGGCGATTTGCATTATGGTACGGA
CCGATTCCATGCGGGCTGTCGGAGAGAACGTTTCGGTATAATCAATCCCT
TGGATCTGAGAATATCCCTTGGCAACGAATCTGGCTTTGTAGATCGGAGA
ATCTGGATTTCCTTTGATGTGATAAACCCATTTTCCACCAACAATTGATT
TGTTCTCAGGCGGTTCGGTTAACGTGTAGGTGTTGTTGAGTTGTAACGAT
TTAATTTCATCATCCATTGCGGCTGCCCATTTTTGCGAATCTGGGCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003393XLOC_003393Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005960-proteinTCONS_00005960-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005960-exon-sc0000061-1491911889:298284..298886TCONS_00005960-exon-sc0000061-1491911889:298284..298886Clytia hemisphaericaexon
TCONS_00005960-exon-sc0000061-1510915933:298284..298886TCONS_00005960-exon-sc0000061-1510915933:298284..298886Clytia hemisphaericaexon
TCONS_00005960-exon-sc0000061-1575043694:298284..298886TCONS_00005960-exon-sc0000061-1575043694:298284..298886Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:298284..298886 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.23081	0.418282	0.368241	0.75352	2.23633	0.767912	1.06263	0.734594	0.248408	0.768633	1.01527	0.53139	1.00306	1.33483	0.987081	1.32207	0.520343	1.1665	0.391041	1.34018	0.878768	1.07814	1.02054	1.10596	0.536569	0.942718	0.97003	1.16507	0.142215	0.626754
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005960 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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