TCONS_00059341 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059341
Unique NameTCONS_00059341
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059341 ID=TCONS_00059341|Name=TCONS_00059341|organism=Clytia hemisphaerica|type=transcript|length=3326bp
AGAAAATAATACATATTCTACTAAgtataaaattatcattaaaaaacgaa
aattaaagATGTTACAAAGAGGTTTAATGAGATTGTCTAAACGAGGCAAC
AAAAAATCACCTCCAGGTtctttacaatctatagaaagcaTTCGAACCAT
TAACCAGGACGAATGGACGAAATATGATGAGCGTTTGATCGATGCCGCAT
ACAAATCTGATCGTGAAAGAATCAAGGAAACCATTCGAAAAAAGGGTGCA
TCGCCAGTCAAAGTCAGTCGTGATGGGCAAACAGCACTTCATATATCAGT
CAAGAAAGGCATGCTGGATTGTGTTGAATTCATGCTTGCTGAAAATCCTG
ATTTATCAACTATCGATCTGCAAGGGCGAACTGTGTACCATATAGCTGCA
AGCAAGGGTGACCCTGTCATGTTGAAAAAGCTTTTAGATTATAGCCGGTG
GTGCCTAGAGGTCAAGGATACAAAAGAAATGACAGCATTACATTATGCAG
TGGCGAGTGGAGAAAATGAGTGTGTGAAACTGCTGATCAATAATAATAGC
CCAGTTGATTTAAGAGATGGTGAAGGGCGTACGCCCCTTTTGACCGCCAT
CATGAACGGCTATGAGAAAATAGCAATGACTCTTGTTCTACACGGTGTTG
ATGTTAACGCCCCTGATTATAAAGAAAGAACACCGATATTTATGGCTTGT
ATCCAAGGCATGCGAGATGTTGTGGCACTCCTCATTTCAAAAGGTGCTGA
CTCAAAACTTGTCGATGCAGAAGGAAAAACATTGGAGCAGATAGCTGGTG
AAGCTGGGCACGTGGAAATTGTTGATATTTTACGGAACAGTGCTGATTCT
GGAATCATGGATATTGAACACATGCATGAAAACGATGaaaacgaagaaga
agaagaattacATGAAAACGGAGACGTGGATGAGACGGATCATGATATCC
AAGAAGAACAATCAACAGAAATGAACGACAAAGAAAACAAACGACATAGT
AGTACCAGCTCATCTTCAgcacaaaattatattttagaagTCAAGCCTAC
ACTGAGGTCACCGACGGATCGTGTACGAACAGACAGTGCAAATAGGCGTT
CCATTCTGAAGAACGATGACTCTAGTTTAACGACGTCAATTATCGAATCG
TTAATGGGTTACGATATCGGAAATGAAACAATCAACGAAAGCACCATCGC
TGAAACgcaagaaaaatATGAACAGGAGAAATACGAAATGCAACAAGCAA
TCTCCGAACGTGATAAAAAAATCGAAGAATTGGAACAAGAGATTTcaaat
atcaagaaaaaattacgtTGGGAAACTGATATGCGCTTCCAAGCAGAAAA
AGAAGTTCTGGGACTGAAAAGCCAACTCGAAAATATCGATatTCAACACT
CAATCAGttcagaaaaagaagaaactcaaACACAAGTAAAAGAAGAGGAA
CCTAAAGAAACGGAAATCGGAAACGAAGAGACGGCGGAAACGGAAAAAAC
GGAACAATCAAAAGAGGAAACATCACAGGAAATGAAAGAGCAGTGCTCTG
AAAATGAAGAGGAGACAGGAGAAGGTGAATCACAAAAAGAAGTTGAAACG
AAAAAAGAAGAAACAGTACAAGATCATATCAACTTTTTGGAAGATCACAT
ATTAGGGTTAGAAGATGACATCGAAAAAAGAGACATTCAAATTACTAACT
TGCAAGGAAAACTAGAGAATGCTCAAGAGTTGGTGGACCTCAACAATAAC
ACGACCGTTTCCCTCGAAGTATTTAACAAATATAAAGCGGAGAAAAAGAC
AGAGAGGACACAATATCGCgaacaaatcaaaattttagaatCACAATTAT
CTGAAATTCAAGCCTCTTTGAATAAAGCTAAATCGGAAAAAGAATATTTG
GAAGATCAGATGAGCTCTGAAGCTGATGAGAAAAATAACTTAATAAACAC
GATGAGAGATGAATCAcataaattacagaccagaatgacAGAATTCGAAG
AGCAATACACGAAAGATATTTCATGTTACAGAGAAAATATATTGTCTCTT
TATCAGaATAAAATGGATGAAAATCTGGATAACATTCTgaagaaaattgt
tttgctgAGAAAGCAGGAATCATGAGATTCGTTGATGAGGCTGAGATCTA
AGAATCATAACAAATTTTTGAACGGATTTTTGGCTAGTCTGGATGGCACT
ATTGAATCTAAGATCGGATAGATAGATGGGATTTCGTGACCATGATAAAT
AAGTTATATTTCTGACTGACGATCCCGAACATGGTTGAACTAAGGAGTTA
GTAATATTCTAAGGTGTAGCTCTATTTTTACCCCTCAAggcaaactcgaa
cccagtcctttAGTAGTtcgctttttatgattttgatggcACTTACGAAA
GGGATATCGACTGTATCGCATCcatcaataaaatttaaaaagcgaTGTAa
tgcaccttttcgaccgtgTTCGCGTGGTCAGGTGCGTGCCACTTAACTTT
TTatttatccccctaaactcaatgcaattcttttttgacacctttttcaa
ttgtctataggtgcgaaaaaagactgaaacggttttagggtggtaaaacg
gacaaattAATGCCCGCGCGGccattggcggctacggtcaaaaAAGCGTa
ttggctctgggtacgagatttcCCTTAAGGATTAATATTTTAACATAGTT
GGACTAAAATACATCAGAATACCTTTTATATTTGTTTCCGTATGGGTAGT
AACTGCTTGAGATTTAAACCTTCTCATTATGGTTTAGATGAGAGACAATT
AATAGAATTTTCTACCACACTCCACCCAAAATCAATTTCTACAAACATTT
AAGATTTGTATATAATACTGTTTTgatattaaatatttttaagataTAAT
AGATTAAGCCTTCAGCAATACttggtcaaatttttagggGATAACTAATG
TCGAGGAAAGGCATGTCATATGATATACTAAGACAATGAacgaagagatt
ttttttgattttatttatttattacgTGATACAGTATATATTAATATTCC
AATATTAGAGAAAGCTTAAAAAACAAGAAATCATTCGCCCAGATAACGTG
ATTCTGATTCATCGCgttgaaaaaatctaataaaaatggaatgATGGGTT
TAAATCTAACTTTggttatattttttcactttttgggaataaaatgtaat
aaataaattttgtaccaaatatttttataccaatttttttttccttttat
tgtCAAATACGTTTATTCATTGTAAATAcgttattttcattttgctttgt
CACCCTATTAAATGAGAAAAAGCAGA
Run BLAST on NCBI

transcript from alignment at scaffold_326:243387..256910+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059341 ID=TCONS_00059341|Name=TCONS_00059341|organism=Clytia hemisphaerica|type=transcript|length=13524bp|location=Sequence derived from alignment at scaffold_326:243387..256910+ (Clytia hemisphaerica)
AGAAAATAATACATATTCTACTAAgtataaaattatcattaaaaaacgaa
aattaaagATGTTACAAAGAGGTTTAATGAGATTGTCTAAACGAGGCAAC
AAAAAATCACCTCCAGGTtctttacaatctatagaaagcaTTCGAACCAT
TAACCAGGTAGGTACGGATGCAGTTAGgagcacccctgtctcagtcaCCG
CCCCGGTTGAATTTTTTCTCACAGCGGGTATAAGATTTTTGTCTAAAGGG
ATGGTGTTTTGGAGTgaacgttttttttctttgaatttcaaatggggatg
aaattaaagTCGATTTTCCAGAGGGAGTCGGAAATTagagggtatttttc
ccaccggggacaaaattttagtcaaattttccagtgggttcaGGGTTTCA
CCGGATCAGTGACACAGGAGTGTGTTCCTATTGTCATACCAAAAGAAAAT
AGCTGTTGGAGTTGAGATTTACACGGTTGAAATGCGGAGTGAAAAACAAT
TTGTTAACCATAAGACACTTTAAAAGTATTGTTATGAAATTTTATGAATA
ATGATAATGCAAATGATCTGGATCTggatcattgagtttaaagcccgaag
ggctagagttcaatatccaacctttctcaggcaaaaaaaagtgaagcctt
aaaaaatgcgccgcatttttgacgacagattgaatctagcaattcctttc
tttacgattgatatttttttcgagatttagcggtgaattttagtttaaat
ctgtcatttgtgtaaaaaccaggcgagccgctcaaggccgcgcaactttg
gtaggatttgttggcttcaaatcctaccaaggagattgacttctagccct
acgggcttatacttcattgatctGGATCTTTGACTTCAAAGTCTAAGATT
AAAGCTttaaactttttcaactttttcaatcttttttgatTCTAGGACGA
ATGGACGAAATATGATGAGCGTTTGATCGATGCCGCATACAAATCTGATC
GTGAAAGAATCAAGTACGTATTTTCCGACCGACAATAAGCTGCACGTAtt
ccctctgatatgttttaataaaaaagatgctataatcgtgtataaaattc
ccattCAAGatttaccccaaatttggggtaacttgtttcaattttcttta
aacgGTTTTtgaaatccaatgattgtattaaCCTCTAGACAGTCAAACTT
TTAATTCAAATATAATGAAACTTGAAGATTTATTGTATAAAACCTACTAA
TcaagctaatcaagtttctCATAAACACAAAGACGGGTataactctcgga
cgagaatttcatacacgatacgcatccctaTATTATGGGTAAAGTCTAAA
CCAACAACTGACTTCAAAACAATGTCAGATGTCATGTCATGTACCAGCTT
GGTAGAAATTAATAATTACCATCGATTATATACTCAAAATGCAGCTTTAT
TCATATTTTTAGACCAGGTCTAGTCTTTGCTCCACTTTAAAGACTCCTTG
ATCGATTATAGACTTTTAAGCATAGTAATAACTAGTTTCTCAGATTACCA
CattcaaagaaattaaaattaatacAATATAATTCAAATGATTTTAAATT
CCAAGAACATTTCGTGTGAGAAAAATACTTGACTGAGTATCCTCTTTCCA
AAAGAAAAGTTTCAATATGCTCAATACCCTACTAATTAAAGTCCATTCGA
TTTACGTGTCACTTATTTTTACTACAATGTGGAAACCATTCCAGCGtaat
tatagaaaaatttcgttagagtggtttccacatgaCAGCAAAAACAGAGT
TGACTCTTAAGACAGATGGACTTTGATACAAATCATTACAAACCATTTat
gcaaaatataaaaaaattcgaaattaaTTTTACTTCTTTAGGGAAACCAT
TCGAAAAAAGGGTGCATCGCCAGTCAAAGTCAGTCGTGATGGGCAAACAG
CGTAAGTAttggaaaatctttggtctACCGGAACTATTTATCAGTTTTGA
TATTAAGATGATAGAGTCATTGTAAAACGTAGAACTCAAgtttaaataca
aaaattattGGAAGGGGAACTTGCAATTGTTAATTATTTGACTCGACAAA
AATTTTTTACTGCTCAAATTGGACAACTTGGTTTTTATGACTTTATATTT
CACCATAACATGTAGGTTCCATTCAGGTATTGGAAATAAAATCTCTGTTT
TTTTTCCTTAGACTTCATATATCAGTCAAGAAAGGCATGCTGGATTGTGT
TGAATTCATGCTTGCTGAAAATCCTGATTTATCAACTATCGATCTGCAAG
GGCGAACTGTGTACCATATAGCTGCAAGCAAGGGTGACCCTGTCATGTTG
AAAAAGCTTTTAGATTATAGCCGGTGGTGCCTAGAGGTCAAGGATACAAA
AGAAATGACAGCATTACATTATGCAGTGGCGAGTGGAGAAAATGAGTGTG
TGAAACTGCTGATCAATAATAATAGCCCAGTTGATTTAAGAGATGGTGAA
GGGCGTACGCCCCTTTTGACCGCCATCATGAACGGCTATGAGAAAATAGC
AATGACTCTTGTTCTACACGGTGTTGATGTTAACGCCCCTGATTATAAAG
AAAGGTTCGTATATTTGACACCCCTGTATCAATCACATACCTCCAACATT
CCTTTCGATAGTTTTTCTCTTTAGTTCTACTGCCATcagaagtcaatttt
ttttctaaatcaatttttgtcttaaatcaattttcactgattttgaTAAC
TTAATGTGAGATAGTGATCTTGCACGATGAGTTCTAGCCTGtttgtacca
aactcttcttcatTGAATGACATACGGCAAGTTTTTGGGGTGGTACAGGT
TATATGACTTCAGAGTTTGATTTATTTCAACCTATCTCATATTTAGAACA
CCGATATTTATGGCTTGTATCCAAGGCATGCGAGATGTTGTGGCACTCCT
CATTTCAAAAGGTGCTGACTCAAAACTTGTCGATGCAGAAGGAAAAACAT
GTAAGTTTATCTTTAAACTCAAACCCAGTCTTTCACTCGAGAAAGCTATC
GTATCTATCAGTAGACTGTGATATAGTCTGAGataaatcactatctaaga
aataagcccaaagccgaagaaaattcgcaaacgggtttttttgccgaaaa
gagtttacagccgttagagtttgccagtcttcttcgaaactctctTACCG
TTTTCTTTCCGTACCGACCACTTTAACGCCAtgccgccatattttcccgc
ctttactatcactgtaacggacgataacatcttCTAATCTATCAGTAAAA
TTAAAGAGTGGTACTcatagcaaactagtctgttaattaatcatgttaGA
GGGCGGGAATATAAAGGCGACGGGCGTTTGCtaaaataggagctgcgtaa
GAGAATAAGCAAAAGTCATTGCGAGGTTGCTGATTTCTTctgctttcagc
ccttgccgctgacaaattttcttcatacgcttacctaactcctacgctca
ctttctCTCGcatgataccgttccagcccgaatTGCATGTCAGTCTAAGA
GTGGTACATGTGGCTCTGGATAGGTTCCATATCTTAACCCCACCGATTTA
TGTGGCTTTAAGTtttaaaaaccgatttttccaaccctccaTCGGGTAGC
CATAGCTCAGGATTTTTAATCTTTAAGTTTTTGTGCTGAGGCTATTAGTT
TTCTAAAGGTACAAAAGATTTTTGTCTGAAAACGATAAGATAAGTGAGAA
GCAATATATGGAGAAAAGTGATCGCTCCCCAAACCCCTGGATAGCTAGCT
AGAAATAGGAGCATTTCTTCCGAATGTTGTAGAAGGCTTAATtatgaaaa
tcattttttcctCTCATTTTCAGTGGAGCAGATAGCTGGTGAAGCTGGGC
ACGTGGAAATTGTTGATATTTTACGGAACAGTGCTGATTCTGGAATCATG
GATATTGAACACATGCATGAAAACGATGGTACGTCAAAAATATAATCACC
TTTTGAacaggctgctggcatccactaacagatttgtgctccttatacta
cctgaGGTTTTGTAGAAGTCCGTTATTTAGACTACCTTTTCAACAGTTCA
GGATCTTTGTTGATGGTGGATGATCATATCaactacacaagatcactaaa
aagggaatagttttgAAGGCGGGAGGAATTTGAAAACGGAGGTTAGCCCG
GGGCGGAGTAAACACTGGCGGAGGCGTTTCCAGTGTTTACGTTTGTTATA
AATTCTACCGCCAATtattttttcccgtaaaccactGTGATGACTGTAAA
CTCTGCGCATCATTTTTTCCCGCTTTTACTCACCCGTTTACTTATCCTCC
AACGATTTGAATTATTTCTTAtagaaaacgaagaagaagaagaattacAT
GAAAACGGAGACGTGGATGAGACGGATCATGATATCCAAGAAGAACAATC
AACAGAAATGAACGACAAAGAAAACAAACGACATAGTAGTACCAGCTCAT
CTTCAgcacaaaattatattttagaagTCAAGCCTACACTGAGGTCACCG
ACGGATCGTGTACGAACAGACAGTGCAAATAGGCGTTCCATTGTAAGATT
GTTCGACCATTCTTTATTTCTTTAGAATGTGTTTCATACATGTGATTaca
tccccgggggggggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCCCCCCCCGGGGATTGCATTTTCCATGCGCCCA
GCTGGCGCACAACGTTATAtgtcaacgtttatctaatgttcaaaACGCTC
TTATATAAAACAACGTTGTAGTAATACCACCTGCGCATAAACATTCTCCC
TACTGCAAGAAGGCTGCAAtaataaaaaacactttttggcaATTTCCAAA
CTTACAATCACTTGTTTCTTTCTCTTCCTGTAGCTGAAGAACGATGACTC
TAGTTTAACGACGTCAATTATCGAATCGTTAATGGGTTACGATATCGGAA
ATGAAACAATCAACGAAAGCACCATCGCTGAAACgcaagaaaaagtaagt
atgcacttttttataagaacatcccaacatttttgaagcctgcagatgtt
tttaacttttttgccatttttgccaGCGAAGTCTTTTTTTgcttacagta
tgtggcccccaaaacggcgatcaaatttgaaatttctctcatatctagag
gaaaagagattttacaaaaatttttgctgcatgaaaacctttaacatctc
tactttatttcctcgaagttctttttcaaaattttcaatttcaacaatat
ttttcaatcgcttaaagatggGTAGCTTTTCTCtagtggcccccaaaacg
gtggtttgaaattttagcgatttctcgagatatctttaagatatgaacac
aaaattttgaccatagtttcgaaatatgatttagagggttttggtcataa
atttatttgataaaatttttacagtatacccctggttgtcaaaatgcagg
tttgaggcccccaaaacggaggtttagttaaaatcaaattattaagccca
gtggtactaggggggggggggactatgaacatatttgtgttttcccttaa
atttacgacccgatggatgtaaaatttatgatttgtatgaaatatttcaa
gattttcgatattgcatagtccaaactgaaaatttagaaattttcaaaat
ggcaattttgattcaacaacgtcttaatcaagtttttgaaaacaaatctc
ttttgaaaatagttccattcatgtatggaataagctgtgaaaatattaga
aaaaaagtctaactgaaactgaaaatattaagctttaaagatacttttct
cctatattttgcaaaaaaatgacagaatctgccgtttttgctgattcagc
gaaaaattttatatataatgttaattttttgttataaactattaactcaa
ggtgataggaatagaattccaagaatttttgctttttctcatatttagta
TTTTCGgctttgtcaatgctgattctagggctctaaaatactggttgacc
ttcaagatgctttatattttacccagcctctaaattcacagatgtatttg
cattttctgaacggcattaggtgtagaaagtttcctataccccgtttcca
taacttattttcaatatccaagtagctagagtgagttatatgcaattttt
atctaattttgatgttacaatatttcctttagacgcaaatattttatttt
gaatctgtctcaaaccagcaaaaacatgctcatttttaagtataaccatt
attctttcaaaataaacaaaaatcgtttaattctNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNaaatcgtttaattctgataaatctacaa
gtcagaatcttcattttaatgaaaacctccgttttgggggccgtctccgt
tttgggggccatatactgtatatagttctcataaaaaacgtgtatagacA
TTTCATAATTTAAAAGGATCTTGGTTCTAAATTACTGATGCTTTAAAGGA
TGCATGGTTAGGAATCTGACAGTTATACttcagtctttttctttcaaatt
atacCACGCGGGAAGGGCGgaggttcgaaataccgttttcccgtcaaagc
TTTGGCTGAATCCCGGAAGCCCCGGCACCCCGGCACATAAtgacaccgtc
acaccggttatAATACCGTTTTCCCGATCTCggcacaccgtaaaagtaca
gtCTCTTCCCCTACCATAGCTTTGAAGAACCTGGACCATTGATTTTCTAC
TGTTTTTCAAACAGCTTTGTGGCATGATGGATGTTAACTTttgatttctc
ttttttttatcaaaatcagtATGAACAGGAGAAATACGAAATGCAACAAG
CAATCTCCGAACGTGATAAAAAAATCGAAGAATTGGAACAAGAGGTTTGT
AGCCTGTttacgttatttcaacgttcatttaacgtgtatatggacgttat
gaacattagattagcgctaaaacaacgttgtgtaccagctgggaaaTCAT
TTTAGAAGAGCATTCGTGTGGATTTAAACTGAGGCCAGCTCCTGAGTCAA
CTTCTTAATCTTGTACTGAATTTGNAGGATTTAAACTGAGGCCAGCTCCA
GAGCCAACTTCTTAATCTTGTACTGAATTTGTGTGTGATTTTTGGGTTAA
AAAATGATAAGCTAGAAGATAAAATTTGAGCAACTTATATacttatattt
ttgaaaaattattaaacTCATCTTAACGTAACCCCAAATCGTGGGCTATA
ATTTCTTTACCTGTTCTTCACTTAAACCAATAAAATCGATTCATTTCTCT
CAATTTTAGATTTcaaatatcaagaaaaaattacgtTGGGAAACTGATAT
GCGCTTCCAAGCAGAAAAAGAAGTTCTGGGACTGAAAAGCCAACTCGAAA
ATATCGATGTGAGTATTCCAACATCCTTTTCCCCGCAtaggggataaaaa
tttctattgaaatccgaATGGGGATAAAGAATCTATTGTTCTaagcttaa
aaaatccagtAGGTTTTGGAGTGTAAGAGCTGTAAGagaaaattgcttga
aaaatcATCTCTATAATAAGTTCACTAATTtacatttctttcaattttta
gatTCAACACTCAATCAGttcagaaaaagaagaaactcaaACACAAGTAA
AAGAAGAGGAACCTAAAGAAACGGAAATCGGAAACGAAGAGACGGCGGAA
ACGGAAAAAACGGAACAATCAAAAGAGGAAACATCACAGGAAATGAAAGA
GCAGTGCTCTGAAAATGAAGAGGAGACAGGAGAAGGTGAATCACAAAAAG
AAGTTGAAACGAAAAAAGAAGGTGATCATTATAAATCATTAAAGGCCATT
CCATTAGGGAGTGGACGAACTTTTCCAAAGGGTCATCGGAGAATGATTTG
CAAGGGGGggaactgattttagttcgtccaccctcactttttaagatatg
aaaaaaaatttccaacagttgttttgcaatttttgccatttttcatggAG
TAtccaagaaatattattttgtcTTGTTCGCCCCCCCTGtatgaaaattt
aatggaacagcctaATGAAAATCTAAAAGGCTTTAAATATTTTCCACAAT
TTTTCCAAAGAAAGCATCAACCAGCGATGGGTGCTAGCTGCGAACGTTTT
AAAACTGCTTTTGTTTGCTACCATACCTTTGGGGCTTTGCAAAGGAACCA
CGAATTTAATACATTTAGGCTAGTCTACCTTTATCTGTAAAACTCGAATT
CTAATAGATCTTTTAATTTCTTATTTGTAGAAACAGTACAAGATCATATC
AACTTTTTGGAAGATCACATATTAGGGTTAGAAGATGACATCGAAAAAAG
AGACATTCAAATTACTAACTTGCAAGGAAAACTAGAGGTAAATTGATATA
AGAAACTTCAGAAAGACACAACAAATAACATACAGCCAACTCTCTCTATT
TCTAACCTCTATAAATCgatttttttctgtaattcgagcTAAAACATTGG
TCCTTTCTGCTGGAAAGAAGTATTTAATTCTATCTATAATTCGATTCTTT
CTCTACTTTTAAGAAATTtggagatcgaattagagagagtcaactataAT
TTAAGAGGGAACCAAAACTATTTCGTTGAAAAGAATACTGTAGAATATAT
CATTTGTGCAAGAAATATTGTGAATCTTGAAATTGCACAACCTTTTCACG
GATTGGTTAGTAAAAACTTGCTCTCCAAACCTATGAGAGCTAAATTCAGT
ACAGCCGGATCTCTATAAATTGATCACGTACAGGGAACATAAACATTCCA
GTTAAGGAATTTTCGACTTACGGAGTAAGGTTTTTAAGACATTGTTATGT
GAAGGGACAAAAATAaccttgttcgagttatagaggttcgatttGTACTA
CAACAAATATTTATATCCAGAAATTTAGACATCGATTTCGATACTTCCTT
TAGAATGCTCAAGAGTTGGTGGACCTCAACAATAACACGACCGTTTCCCT
CGAAGTATTTAACAAATATAAAGTAAGTATTACAGGtttttgtactagta
atctcatggttataagggaaattcgggataaatttcccgaggtcaatttt
gaaattttttgaaatttcccgagtgcaacgagggaaatttaaaacatttc
gaaatttgaccgagggtaatttatccagaatttcacgaaaacaagcatgg
gattcctggttaatctcatggtttggattgaaattctaacaattttgaaa
gacgtcaatttaacactggaattcaatctgaaaatttaaaaaaaggtctc
aaaaagtcatagaaacgcgaatcgagttttaattggatagtattccattt
acttaagcctttgaagttagtaagaaagtcgaaaaaggtgatgaatttcc
aaacgatgaaaattttacttttgcgggaaattacaaaatctaggagggaa
attacaaaagctaggagggaaattacaaattaacgtaagcaaaaatgtca
atcgaatttcaatcaactaTGAGATTATTAATATAAACATCCATCCATCT
AGAAGCTTCcgaatattcttaaatttttgagttctaagctttcaaatgtt
cctaacttgttcttattttccccattttgtgagcattttttgtgttattt
cctaagaaatcgggtggtTTAATCGggtttaaatgttcttaacttattct
tgatatttttaccTTCGAAGACCATGTTCTAATAtagctattttataaaa
aatatgtaataGGGATAAAAAGTTTGTGATTTGGTATACTGGGggtaaat
gtttgaaaatttctaacaaaatagaccttttcattaaTTACGTCaggaac
atcacttgcctcgtatccaaacaattaccatggtgattatgtctcttgag
acattaaattatttttttttaaatagaaagaaatagaaagtagttttagt
aaaatccgctgggagttaatcaccacggcaataatttcaaaacgaggcaa
gtgatgttcgtgacgtaatttatgaaaaggtctattagagaAATTTCAAT
AATCAATAGTGACAACAAGGTCAATATTTCTCGATCCAAGCATGTTCTTT
CAAGCAATTTGGACTtttattaaaatgttattttaatgtttttatatttt
atactttTAGGCGGAGAAAAAGACAGAGAGGACACAATATCGCgaacaaa
tcaaaattttagaatCACAATTATCTGAAATTCAAGCCTCTTTGAATAAA
GCTAAATCGGAAAAAGAATATTTGGAAGATCAGATGAGCTCTGAAGCTGA
TGAGAAAAATAACTTAATAAACACGATGAGAGATGAATCAcataaattac
agaccagaatgacAGTAAGGATCTTGTATTTCTATAAGTTTGCGAACGCA
GTTGGAGGCGGCCCGAATGAGgctcctcttttgatagctatctgggaggg
cgccactctttctccctggatttctcccaCTTACCCTTCAAttgattgct
gagcatcaagcagagaggcatcaagtatcaTTTTCGTACTAAGtacgaag
tctttggtatgacccggttgggaattgaacccacaaccttgcgcaacgta
gccgaatgctctaccactgcactacggtcgcatCTACTTTGATAATGGGA
TACAACTCTTCACAAAATTTTACGGCTTTTGCAGTTATTACTTCAACCTT
TCAAACAAGGCTTTCCAAATGAAATATGAAAtcttgattttattcaaata
cttttctATTTTCCAGGAATTCGAAGAGCAATACACGAAAGATATTTCAT
GTTACAGAGAAAATATATTGTCTCTTTATCAGGTAAGAGATTACTGTATT
TTGAGAAAGACTGCCTTCTAATAATAATATTCTATGTATAACCAGAGTTT
TGTTGTGCCAAGAAAAAGATCCTTGGCTCTGAGACAATTATTTCTGGTTT
TTATACCCCTTATCATGAATTACtctgaaattcaaaattgacctGTAGTG
ACAAACTGTaagaattttatcgcgcatgtttCGTGATACTCAAAGTCCCC
TAGTAATAATTTGAGCCGGTTGGTATAAGATTTATTGTGTAAAATTACGA
AATGCTTTTGTTTACTGGTCGACTGagaactaaagtctattcacgataag
tgtgcactcttttttcatttacctataacttttgaagaaattcttcaatc
tttataaatttggtagcattggaaagatattagtgattgaaacaatttga
aataaaaaaaactttaaaaagattataaaaatgaagattaaaatgaagaa
gaaaaaaatgaagatcttgtagaaaagtgctataactatcattttcactg
aagtgagtccttaatcatcgaacgttatcactgtgaaaaaaattctcaaa
aataatcattcagtcaaaagatatcaaacaaagttataagctgattgaag
tctaaaaacgctgttttNNCTTatgaactttgtatcataactttatattg
aataaatattttaataaaatttctttacagtGATTATCTattaagatcaa
aaaatctctccaatgaaaatgaaagttatagcacttttctacaagatctt
catttttttcttcttcattttcatcttcatttttagaattttgttaaaga
tttttttatttcaaattgttccactcactaatatctttccaatgatacca
aatttataaagattgaagaattccttcaaaagttataggtaaaagaaaaa
agagtgcacacttatcatgaatagactttagtttagTTCTCCAATCTCCA
ATGGAGAATTTTTTATCTTACTAATACCGTAAATAGACGAAAATAtgagt
tgaaaaaaatatatatgtgaagaaattcatagaatttctgtccaactatc
ttctttcaggaggtTTAGGTGgtagagcagcatatgcatttgccttatta
ggactcgtcagcactgcatactgcaccctggctagGCAGATAGAATTGCC
TAGCATCTCAATTCTCACGCCATAAAactgaaagaatattttttaatctt
ttagaATAAAATGGATGAAAATCTGGATAACATTCTgaagaaaattgttt
tgctgAGAAAGCAGGAATCATGAGATTCGTTGATGAGGCTGAGATCTAAG
AATCATAACAAATTTTTGAACGGATTTTTGGCTAGTCTGGATGGCACTAT
TGAATCTAAGATCGGATAGATAGATGGGATTTCGTGACCATGATAAATAA
GTTATATTTCTGACTGACGATCCCGAACATGGTTGAACTAAGGAGTTAGT
AATATTCTAAGGTGTAGCTCTATTTTTACCCCTCAAggcaaactcgaacc
cagtcctttAGTAGTtcgctttttatgattttgatggcACTTACGAAAGG
GATATCGACTGTATCGCATCcatcaataaaatttaaaaagcgaTGTAatg
caccttttcgaccgtgTTCGCGTGGTCAGGTGCGTGCCACTTAACTTTTT
atttatccccctaaactcaatgcaattcttttttgacacctttttcaatt
gtctataggtgcgaaaaaagactgaaacggttttagggtggtaaaacgga
caaattAATGCCCGCGCGGccattggcggctacggtcaaaaAAGCGTatt
ggctctgggtacgagatttcCCTTAAGGATTAATATTTTAACATAGTTGG
ACTAAAATACATCAGAATACCTTTTATATTTGTTTCCGTATGGGTAGTAA
CTGCTTGAGATTTAAACCTTCTCATTATGGTTTAGATGAGAGACAATTAA
TAGAATTTTCTACCACACTCCACCCAAAATCAATTTCTACAAACATTTAA
GATTTGTATATAATACTGTTTTgatattaaatatttttaagataTAATAG
ATTAAGCCTTCAGCAATACttggtcaaatttttagggGATAACTAATGTC
GAGGAAAGGCATGTCATATGATATACTAAGACAATGAacgaagagatttt
ttttgattttatttatttattacgTGATACAGTATATATTAATATTCCAA
TATTAGAGAAAGCTTAAAAAACAAGAAATCATTCGCCCAGATAACGTGAT
TCTGATTCATCGCgttgaaaaaatctaataaaaatggaatgATGGGTTTA
AATCTAACTTTggttatattttttcactttttgggaataaaatgtaataa
ataaattttgtaccaaatatttttataccaatttttttttccttttattg
tCAAATACGTTTATTCATTGTAAATAcgttattttcattttgctttgtCA
CCCTATTAAATGAGAAAAAGCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037357XLOC_037357Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059341-exon-scaffold_326-1491911889:243387..243543TCONS_00059341-exon-scaffold_326-1491911889:243387..243543Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:243387..243543TCONS_00059341-exon-scaffold_326-1510915933:243387..243543Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:243387..243543TCONS_00059341-exon-scaffold_326-1575043694:243387..243543Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:244332..244399TCONS_00059341-exon-scaffold_326-1491911889:244332..244399Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:244332..244399TCONS_00059341-exon-scaffold_326-1510915933:244332..244399Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:244332..244399TCONS_00059341-exon-scaffold_326-1575043694:244332..244399Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:245278..245337TCONS_00059341-exon-scaffold_326-1491911889:245278..245337Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:245278..245337TCONS_00059341-exon-scaffold_326-1510915933:245278..245337Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:245278..245337TCONS_00059341-exon-scaffold_326-1575043694:245278..245337Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:245598..245990TCONS_00059341-exon-scaffold_326-1491911889:245598..245990Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:245598..245990TCONS_00059341-exon-scaffold_326-1510915933:245598..245990Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:245598..245990TCONS_00059341-exon-scaffold_326-1575043694:245598..245990Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:246283..246386TCONS_00059341-exon-scaffold_326-1491911889:246283..246386Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:246283..246386TCONS_00059341-exon-scaffold_326-1510915933:246283..246386Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:246283..246386TCONS_00059341-exon-scaffold_326-1575043694:246283..246386Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:247260..247364TCONS_00059341-exon-scaffold_326-1491911889:247260..247364Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:247260..247364TCONS_00059341-exon-scaffold_326-1510915933:247260..247364Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:247260..247364TCONS_00059341-exon-scaffold_326-1575043694:247260..247364Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:247761..247978TCONS_00059341-exon-scaffold_326-1491911889:247761..247978Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:247761..247978TCONS_00059341-exon-scaffold_326-1510915933:247761..247978Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:247761..247978TCONS_00059341-exon-scaffold_326-1575043694:247761..247978Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:248470..248580TCONS_00059341-exon-scaffold_326-1491911889:248470..248580Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:248470..248580TCONS_00059341-exon-scaffold_326-1510915933:248470..248580Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:248470..248580TCONS_00059341-exon-scaffold_326-1575043694:248470..248580Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:250406..250480TCONS_00059341-exon-scaffold_326-1491911889:250406..250480Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:250406..250480TCONS_00059341-exon-scaffold_326-1510915933:250406..250480Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:250406..250480TCONS_00059341-exon-scaffold_326-1575043694:250406..250480Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:250896..250994TCONS_00059341-exon-scaffold_326-1491911889:250896..250994Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:250896..250994TCONS_00059341-exon-scaffold_326-1510915933:250896..250994Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:250896..250994TCONS_00059341-exon-scaffold_326-1575043694:250896..250994Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:251188..251407TCONS_00059341-exon-scaffold_326-1491911889:251188..251407Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:251188..251407TCONS_00059341-exon-scaffold_326-1510915933:251188..251407Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:251188..251407TCONS_00059341-exon-scaffold_326-1575043694:251188..251407Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:251867..251973TCONS_00059341-exon-scaffold_326-1491911889:251867..251973Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:251867..251973TCONS_00059341-exon-scaffold_326-1510915933:251867..251973Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:251867..251973TCONS_00059341-exon-scaffold_326-1575043694:251867..251973Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:252540..252608TCONS_00059341-exon-scaffold_326-1491911889:252540..252608Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:252540..252608TCONS_00059341-exon-scaffold_326-1510915933:252540..252608Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:252540..252608TCONS_00059341-exon-scaffold_326-1575043694:252540..252608Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:253747..253950TCONS_00059341-exon-scaffold_326-1491911889:253747..253950Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:253747..253950TCONS_00059341-exon-scaffold_326-1510915933:253747..253950Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:253747..253950TCONS_00059341-exon-scaffold_326-1575043694:253747..253950Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:254353..254418TCONS_00059341-exon-scaffold_326-1491911889:254353..254418Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:254353..254418TCONS_00059341-exon-scaffold_326-1510915933:254353..254418Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:254353..254418TCONS_00059341-exon-scaffold_326-1575043694:254353..254418Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1491911889:255641..256910TCONS_00059341-exon-scaffold_326-1491911889:255641..256910Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1510915933:255641..256910TCONS_00059341-exon-scaffold_326-1510915933:255641..256910Clytia hemisphaericaexon
TCONS_00059341-exon-scaffold_326-1575043694:255641..256910TCONS_00059341-exon-scaffold_326-1575043694:255641..256910Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:243387..256910 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07153	2.16436	3.90858e-08	0.135325	26.1229	20.0441	19.2009	22.0026	14.7605	15.3364	13.8072	12.056	16.1169	16.7808	13.211	13.5621	11.6631	8.8089	12.5683	18.3516	12.6254	11.0054	4.46252	3.14284	4.77693	16.8879	58.8709	38.5594	15.0507	15.7354
Blast
[Close]
BLAST of TCONS_00059341 vs. Swiss-Prot (Human)
Match: RAI14 (Ankycorbin OS=Homo sapiens GN=RAI14 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.396e-38
Identity = 80/212 (37.74%), Postives = 121/212 (57.08%), Query Frame = 2 
Query:  140 IRTINQDEWTKYDERLIDAAYKSDRERIKETIRKKGASPVKVSRDGQTALHISVKKGMLDCVEFMLAENPDLSTIDLQGRTVYHIAASKGDPVMLKKLLDYSRWCLEVKDTKEMTALHYAVASGENECVKLLINNNSPVDLRDGEGRTPLLTAIMNGYEKIAMTLVLHGVDVNAPDYKERTPIFMACIQGMRDVVALLISKGADSKLVDAEG 775
             R  + +EW K D+RL+ A    D E++   + KKGAS  K   +G+TA H++  KG ++C+  M+    D++  D  G +  H+AA       ++KLL  S+   E  D+   TALHYA A G  + V++L  + SP++L+D +G  PLL A+ NG+ +I   L+ HG DVN+ +   RT + +AC  G  + V  LI KGAD  LVD+ G
Sbjct:    8 FRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHVECLRVMITHGVDVTAQDTTGHSALHLAAKNSHHECIRKLLQ-SKCPAESVDSSGKTALHYAAAQGCLQAVQILCEHKSPINLKDLDGNIPLLLAVQNGHSEICHFLLDHGADVNSRNKSGRTALMLACEIGSSNAVEALIKKGADLNLVDSLG 218
The following BLAST results are available for this feature:
BLAST of TCONS_00059341 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAI141.396e-3837.74Ankycorbin OS=Homo sapiens GN=RAI14 PE=1 SV=2[more]
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