TCONS_00059353 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059353
Unique NameTCONS_00059353
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1016

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059353 ID=TCONS_00059353|Name=TCONS_00059353|organism=Clytia hemisphaerica|type=transcript|length=1016bp
TATGATATGAGAAGAGATAGTACTtttttatcggagttttttttaagCAG
ATAGAAATGcTGAAACTTCTAGCTCTTTTTTGCCTTATTGGCGTTTGCGT
TGCTTATACCATCGAGAAAAACCCTCAAGTTACAGATAATGAATGGCATG
TATGGAGATTAACACATAAGAAAGTTTACAAAGATTTGGACGAAAAAAGA
GTTCGTTATGCTATTTGGAAAGATAATGTTCAATACATCACTGAGTTCAA
TGCTCAAAACAGAcacatgaaattgaaaatcaacCATTTCGGAGATTACA
CCAACCTTGAGTTCAGCAAGGTGATGATGGACTCCCTGATAGTGTTGATT
GGCGAAGTAAAGGTTACGTGACTCCTGTTAAAAATCAAGGAGTGATGGGG
AAATGTTGGGCCTTCTCTGTGACAGGTGCATTCGAAGGTCAACTATTCAA
GAAAACAGGAAAATTGGTCAGTTTGAGTGAGCAAAATTTGGCAGACTGTG
TGAAGGGGTTTGGGTCGATTGATAATGGATATAATTACGTTATGGAGAAC
GGAGGTTTAGATACAGCAGAGGGATACCCTGGTCCTGGCaagGTTGGAGA
ATGCAGATATAATCCTAATGCGATCGGTGTCACGTGTACTGGTTGGGCGG
ATCTTTTGAAGGGCGATGAGAGCGCCCTCCAAAAAGCAGTGGCGTTAATC
GGCCCTATTGCGGTCGGCTTTGATGCCAGTCACAGGTCCTTCCAGTTCTA
TTCAAGTGGTGTTTACAGTGAACCTGATTGTTCAACAAGTCAGATCGATC
ACACAGCTCTGGTGGTTGGATATGGAGCAGAGGATGGAGTGGATTATTGG
ATTGTCAAAAACAGTTGGGGAACAAACTGGGGAGAGAAAGGTTATGTCAA
AATGCGAAGAAACTTCAACAACATGTGTGGAATTGCAACTATGGCTAGCT
ACCCGTATGTTGAAAGATGAAATGAACTCACAATACTTCTTTGACTATAT
ATATGCTTGTTAGTAC
Run BLAST on NCBI

transcript from alignment at scaffold_326:267931..274298-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059353 ID=TCONS_00059353|Name=TCONS_00059353|organism=Clytia hemisphaerica|type=transcript|length=6368bp|location=Sequence derived from alignment at scaffold_326:267931..274298- (Clytia hemisphaerica)
TATGATATGAGAAGAGATAGTACTTTTTTATCGGAGTTTTTTTTAAGCAG
ATAGAAATGGTACGTATATATACTATTGATGTATTATGCAAACAAGTCAA
AACAAATCATGGTAATCCCAGGACTGATTCTAGGAATTTCTGAGAGGATG
GCATTTTTCCGGGGGGCAAAGTTCCTAGGAGTGGAAACTGTACGGGAGAG
TCCCTGGGGGTAATCTTCCCGTATATTGATTGCACGCCATAATGGCTGTT
GGCTAGACGCAACAACGTTCATTTTTAACCAATCAAAAGCCAGTATGTTA
TCAAAGCGCAGTGGTCCTGACGGGGAGAAAATCTCAATCCCTACCAAGTT
TGTTCTCTTCGAACTTTTGATTTTTGGACTTGGAACTTTAAGGTCTGTTA
CTAAACATCGCAAGACAGAGTCAAGTTACAATAGAATAATATGAGTTATG
ACGTAATTTTGACATATAAAGATTCGATCTTAATCAAGACTCGAAGTTTT
GCTGACATCGGGCAGTTTATCGAATCTGTATCTCTCACAATTTTTTTCAG
CTGAAACTTCTAGCTCTTTTTTGCCTTATTGGCGTTTGCGTTGCTTATAC
CATCGAGAAAAACCCTCAAGTTACAGATAATGAATGGCATGTATGGAGAT
TAACACATAAGAAAGTTTACAAAGATTTGGACGAAAAAAGAGTTCGTTAT
GCTATTTGGAAAGATAATGTTCAATACATCACTGAGTTCAATGCTCAAAA
CAGACACATGAAATTGAAAATCAACCATTTCGGAGATTACACCAACCTTG
AGTTCAGGTTAAATTTCTAATTACATTGTCCTTGCGCACTGGTGGATTTA
AGACAATAGAGGAAGCATGTCGGAAACCTGTGAAGGAGTGCAACGCTCGT
TAAAAGGCAATGAAATTACAATTACAAATCTCTTCCTCTGATAAGTCCGA
CATGGTCTAAAACCACCTTTACTTGGATTTCGGAATAAAAGTCAAAATAT
TTCTGTTAAAACGTACAAAGTGACTCTTTACAGATGCCTTATAAACGAAG
CTCCCCACAACCTTGCTTGTTAACTTTTCAATTTTTCTACCCCCTGCCAT
TACTAGGACCCGCCCTGTTTATTTTGAACGAATGTTCAGTTGTCAAAGGA
AGAGTGTCTTTTCTTACTCCAAATAGCCAGGTTTTAGTCTCTGGATTACC
TTATTCTATTTTGGAGGTATTTAGATGTATTTCCAGTTGCCAGTAACTAG
GCACCTGAGAGTACTAAAGCCCCATAGCTCACTTTCTAATAATTCTGATA
GCGCTTCCGATTGTATCACGTCCATCAGTAAAATTAAAAAGTAGTGCTCT
GGGTACGAGATTACTTTTCACCCTTTTTAGATACTTGACAAACGGTCTCA
GTCTAGAAAACAGAACATCCAAAGCAACTTCCTTCTTGCAGCAAGGTGAT
GATGGACTCCCTGATAGTGTTGATTGGCGAAGTAAAGGTTACGTGACTCC
TGTTAAAAATCAAGGAGTGATGGGGAAATGTTGGGCCTTCTCTGTGGTAA
GAATTACTTTCTTATTTCATTTGGTACATTCGCGAAAGATGCGATGGAAC
CAAAAATATAGCGAGTGAGGAGGTGCACCTTCGCGAATGGAAGAAAATTT
TGATGTTGACCCTGTAATATGCCTTGAAATCAAAACAGCCCAGAAAGAAA
ACTATTGAAAGTATGAACCGTGATATTTTACAAATATCATTTTATTTGAA
AAAAGTGAATGGGTCATGTCTGATTCTCGATGGCGTGGACTCGGTTTGTT
ACCGAACATGGTTTCTTTTCTATGTTCAAAATATAATTGATAATTGAGTA
TTTTAACGTTTTTCAAAATTTTAAAGTTCGGATGAGAGTTGTTATTTTAG
TACTTCTACTTTATTTCATTTGGATATTTAGATTTTGGAGGGAGTTCAGT
ATGGCTTCTAAGCTATATTCTCAGCCTCATTGGGGCAGTTTTGAGCTCTT
CATTGAGATCCTAGGGTCCTAAGACTTAAGTCCCATGTTAAAACTCTACG
CTCCGGAAGTAACTTAGTAAACTTAAAATTTTGACCTTTTTATGAAATTT
TTTGTCCATCATGTAGAAGGGACGTTGATCCTTTCCATGAAAAAAGAAAC
TAGAGAATTTTGCGGTGCTGCTGATTTTCAAAAATTAAATTTATTAACAC
ACCCCTCTTAGAACCCTAGTTGAGGTTTTTCCGGGGGTGAAAGTTTCTAT
CGAAATTCCAATGTAGATAGGAATTCTATTGTTCCCAGCTCAAAATTTCA
AGTGGGAATTTTCCAGTGGGACTGGGGTCCGACCGGATTTGTGACAAAGG
GGTGTATCAATGAGAATATATCCTAATGAAGTTTTCAATACAACGAATGA
ATAAATTTCATATTTAAGACAGTGTCTGACTTTCTACTTCTTGTTCTAAG
AAAGACTTGATAAATTTGAATTAAATCTCAAATTTTTAATCTGTTTGGCA
TAACTTTTAATTACAGACAGGTGCATTCGAAGGTCAACTATTCAAGAAAA
CAGGAAAATTGGTCAGTTTGAGTGAGCAAAATTTGGCAGACTGTGTGAAG
GGGTTTGGGTCGATTGATAATGGATATAATTACGTTATGGAGAACGGAGG
TTTAGATACAGCAGAGGGATACCCTGGTCCTGGCAAGGTAAGGTTTGATA
TGTTTTCTAGAGACTTTAATTATAACGTATTTTGAACGTGCACGGCTATA
AGATCTCCACATCCTGATATCTATATATCCAAATATCCTATATATTCTAT
TCTGCCGTACAATCAAACGTACCAAAACGACAAAAATTCGGATAGTGCTG
CGGTACAGCGACTTTGAAAAAAGCAAAGCAGGCTGGCGCTTTATCCAAGA
AAGACTTCTCGAAGAGTCTCTCCTAGCTTGGTTCGTCTCTTGATTTGTTC
GAAAATGGAAATGTTTTCATTTGATTGTTTAGGGAACTTTTCAATTGTTT
TAGGTAAATACGGTAAATCATCATGACATGTGTCATAGAATGCTAAAAGA
TCTATTACATAAAGTCATGTACATTAATTTCCCAGCCCGAAGGGCTAGAC
TCAAGACTTTTGGGAATAGGCCATTTCACGGTCGAAATGGATCATGGGTA
ATCAGGACTGATTGGGCCTCCATTACGGCTTCCCGTTGGCTAGACGCAAA
AATCTTCAATTTTTTTCAAAACTTTGGACCAATAGTAAGTCGTTATTAGC
GCGCAGTGGTCCTGATTACCCATTACGCTTTGCGACTGTGAAATGGCCTA
TGAAGCTACTTAATTTAATCCAGAACACCCGCGCGTGGTTTTTACACAAA
TGCCGGATCGAAAGTAAAATCTATCACTAGATTAAAAACTGCTAGATACA
ATCCGTCGTCATAATTGCAGCGCGTTCTAGGCGCGTTCTGGATGGGGAAT
AAGTAGCTTCAATCTGGCCCTTCGGGCTCTCAACTCAAAGGTATTGGTAT
TCCATCGGATAAGCTGGGAATTATTTCTAATGTGAGCACCAAAGTTTAGC
TTCCTCTTAAATTTAACCTGTGAAGAAAGATTGTATCAATCTTTTCTCGC
TCGTCTCATTCTTATTGTTTAAAGAATTGTACATACATCTAGTTTTTAAC
GATATTCTAAATTGTGTAGGGAATTATCTTATTCCGAAAAGATTCTTAAA
ATTTGTGCAACCATATCACTGAGATGGACGGGAAGAAGAAAAATATCAGT
ACCGTGAAAAGCACAGCTCAAAATCATATATTTACGCTGTGCCGACGAAT
CGAGATTCTATTCATCGCGCAATCAGCGAAGACAAAAGTAACCATGACGA
CCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACATTAATATGGTAATA
TTTGCTCTTCATCTTTGATTTTTTCTACAGTGATTAGATTGACACATGCG
CGATAAAATTTCTATTATTTGTCTTCATAGGTTACTATTTTCTTTGAAAA
CGTAACCTATGATACTCAGGGTAAAATATCAGCCCTTTACTTCAGAAAAC
TTTTAAGGCTGTAGCTTTATTTCCCCGATAAATATATTCTTCTCACCTTT
GGCACAAAAGCTTATCTTGGTCTACTACCACAAGGTGAATTATGAGCCGT
AGACCATATGTGACCACGTGAAGTTAACGGGAAGACTGTCAGAAAAGTCC
TAAATTAGTACACTTTCAAAATGAGAATATCGAATTTATCCATCCAGTGA
CAATATCATTATCTATACTTAAGGTTGGAGAATGCAGATATAATCCTAAT
GCGATCGGTGTCACGTGTACTGGTTGGGCGGATCTTTTGAAGGGCGATGA
GAGCGCCCTCCAAAAAGCAGTGGCGTTAATCGGCCCTATTGCGGTCGGCT
TTGATGCCAGTCACAGGTCCTTCCAGTTCTATTCAAGTGGTGTTTACAGT
GAACCTGATTGTTCAACAAGTCAGATCGATCACACAGCTCTGGTGGTTGG
ATATGGAGCAGAGGATGGAGTGGATTATTGGATTGTCAAAAACAGGTATA
ATTTACTAGAATATATGAGTGCGAAGGTAGAGAGTATATCACTATTTTCC
CTAACATCGAGATTGTCAAAAACAAAATTTGTTTCAATATAATTTAGCAG
TGGAAACAAACAAGGGATCCACTCCTGTTTGTCTTTTCAACAACACAATT
CGCTATCTTTCGCTAAATTCGAACTCTATCAAAAGAGAGTCTCTGCTGCA
AATTATATTGGGATAGACTTTATTTGAAATATCTTTTAAGATTGAAATTG
CAATTATCTTGATTAGGCGTTACCCTTTCAATACTTAGTTTTAAACAGCC
AGAAAACGATGAATATGAAAATGGTTTTAGGATAGTCTCAATCTTTTACA
AATAACTGAAAGACTTGTCTTTTTAGCTTTTTTATCTTGGCTTTTCCAAC
TAGAAAATCATAAACTAATAAGAAAAGTTCCATCTTTTTTGCAATCTTGA
TCGAATTCGTTCTATTTTTTGACTCCTTGAGGCTTGTAGCAATAAAATCT
TAAATAACAAATTGAGTTTAAGCATCAATTAAGAGCATGGAGATATATGG
AGATTTTTCAGATACAATTTTGAAAATCCCAATCAAAATACCTCGGATCT
GAGGTTGAATACACCAGTATTTTTCTAACTTACACTTTATGAGAGCCAGT
AAATTTTGGCTAAGGCTGGGTTTTCCTTAATTTTATGAAACTCACAGGCT
TACATGTTCTCAATACGCCCAGTTTCTTTATTCAAAAACTTAAACTTGGC
TTAAATTTTTTTTTTAGAGGTCATCGCGTAAGTAATGTTTACCATCTAAA
CGTTCAAGCATTTTCGGAACGTACTAGAGAAATCATATACAAGTCGGTAT
TGAAAAATATAAAATATACTATATACCGGAGCCTGTCCCTTTTGGATTTG
AATAAAATTCTACTAGAATTATGGATTATGTATAAGAAAGAAAGAAAACA
TTTAAATTTCATCTTGAGGGAGTCGTACTCTACCTCTCGATCCGATGCAT
CTCACTGTAGATCTAACGAGTGAGAAGCATATGATCGTTTTGAGAAAGTT
TCATGTCTTTTTGTCTGCTATCATTTCAGCTAGACGCTTGTAAAATAACG
TACATTCACGTTCCATCGCCCCATTTGCCTCAAAAACAAGCGGAGAAAAG
GCCCATTTTTGGCTTAGCTTAAATTCTGTACTTTCTAAGTAATTTCTGAA
ATCTGAGGCTTAGGATAGTTTTCAATTTGTTCTTAGGTTTTGGCCGATTT
TCAGCCTCTTGTTCTTATAAAATAGTTCCTATGAAAAAAGCATGTAATTT
TCTTTTTTTGCTATAGTTGGGGAACAAACTGGGGAGAGAAAGGTTATGTC
AAAATGCGAAGAAACTTCAACAACATGTGTGGAATTGCAACTATGGCTAG
CTACCCGTATGTTGAAAGATGAAATGAACTCACAATACTTCTTTGACTAT
ATATATGCTTGTTAGTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037365XLOC_037365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059353-exon-scaffold_326-1575043694:274240..274298TCONS_00059353-exon-scaffold_326-1575043694:274240..274298Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1575043694:273492..273748TCONS_00059353-exon-scaffold_326-1575043694:273492..273748Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1575043694:272753..272857TCONS_00059353-exon-scaffold_326-1575043694:272753..272857Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1575043694:271612..271782TCONS_00059353-exon-scaffold_326-1575043694:271612..271782Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1575043694:269404..269675TCONS_00059353-exon-scaffold_326-1575043694:269404..269675Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1575043694:267931..268082TCONS_00059353-exon-scaffold_326-1575043694:267931..268082Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1510915933:274240..274298TCONS_00059353-exon-scaffold_326-1510915933:274240..274298Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1510915933:273492..273748TCONS_00059353-exon-scaffold_326-1510915933:273492..273748Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1510915933:272753..272857TCONS_00059353-exon-scaffold_326-1510915933:272753..272857Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1510915933:271612..271782TCONS_00059353-exon-scaffold_326-1510915933:271612..271782Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1510915933:269404..269675TCONS_00059353-exon-scaffold_326-1510915933:269404..269675Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1510915933:267931..268082TCONS_00059353-exon-scaffold_326-1510915933:267931..268082Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1491911889:274240..274298TCONS_00059353-exon-scaffold_326-1491911889:274240..274298Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1491911889:273492..273748TCONS_00059353-exon-scaffold_326-1491911889:273492..273748Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1491911889:272753..272857TCONS_00059353-exon-scaffold_326-1491911889:272753..272857Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1491911889:271612..271782TCONS_00059353-exon-scaffold_326-1491911889:271612..271782Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1491911889:269404..269675TCONS_00059353-exon-scaffold_326-1491911889:269404..269675Clytia hemisphaericaexon
TCONS_00059353-exon-scaffold_326-1491911889:267931..268082TCONS_00059353-exon-scaffold_326-1491911889:267931..268082Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:267931..274298 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0699849	0	0	0	0	0	0	0	0	0.789192	0.479154	6.85494	6.70348	1.38939	0.854934	6.30293	6.81149	1.81462	6.21336	3.71835	1.07881	0	0	0	0.530005	0	2.65775
Blast
[Close]
BLAST of TCONS_00059353 vs. Swiss-Prot (Human)
Match: CATL2 (Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 4.046e-78
Identity = 130/244 (53.28%), Postives = 152/244 (62.30%), Query Frame = 2 
Query:  272 IENQPFRR---LHQP*VQQGDDGLPDSVDWRSKGYVTPVKNQGVMGKCWAFSVTGAFEGQLFKKTGKLVSLSEQNLADCVKGFGS-------IDNGYNYVMENGGLDTAEGYPGPGKVGECRYNPNAIGVTCTGWADLLKGDESALQKAVALIGPIAVGFDASHRSFQFYSSGVYSEPDCSTSQIDHTALVVGYGAE----DGVDYWIVKNSWGTNWGEKGYVKMRRNFNNMCGIATMASYPYV 961
              NQ FR+     +P        LP SVDWR KGYVTPVKNQ   G CWAFS TGA EGQ+F+KTGKLVSLSEQNL DC +  G+       +   + YV ENGGLD+ E YP       C+Y P       TG+  +  G E AL KAVA +GPI+V  DA H SFQFY SG+Y EPDCS+  +DH  LVVGYG E    +   YW+VKNSWG  WG  GYVK+ ++ NN CGIAT ASYP V
Sbjct:   95 FRNQKFRKGKVFREPLFLD----LPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSVANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGVLVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 334
The following BLAST results are available for this feature:
BLAST of TCONS_00059353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CATL24.046e-7853.28Cathepsin L2 OS=Homo sapiens GN=CTSV PE=1 SV=2[more]
back to top