TCONS_00059380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059380
Unique NameTCONS_00059380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length731

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059380 ID=TCONS_00059380|Name=TCONS_00059380|organism=Clytia hemisphaerica|type=transcript|length=731bp
tttatttaaaaaaaaaagtttaaagcgGAAACAAATATGTACAAACAACA
AACACACATAGTAACATTTATTCCAAATAAACAAGAAAGACCATAGCAAC
AGCATGTATTGTGCGATTACTCCAAGAGAAACTTTCAAAAGTGTCTGTCG
AATATGCCATTAATGCTTTGCTGGCCACATCCAAACCTTGCTTTTGTTCA
TTGGNGACCATAGCAACAGCATGTATTGTGCGATTACTCCAAGAGAAACT
TTCAAAAGTGTCTGTCGAATATGCCATTAATGCTTTGCTGGCCACATCCA
AACCTTGTTTTTGTTCATTGGATATGAAAACTGACGTCACAATTCGATAC
CGGTTATTTAGAACTTTCTGCACTTTATGTTTAATAGCGTCACTCATGGT
TACAGCCAACACAGGGCTTTTCTTTGGGCAATATACCTGGTCTTTTAAAT
GGTTTTCCAACTCTTCGCTTATAATATCACGAATAACTTTAGCATTGAAT
TTTCGTGCTTCTGCTACATGATATGTGTTCTTGAAAGATAGATATCCCAA
ACTACTCGAGTTGTCATGACTACGGGTAAACGGGCTGGCTGATCCGTTCA
ATAATTCTGGTCTAGGTTCTGAATAGTGAGCGAGAGTGACAATGGATTTT
CCAGCTTGTTTGTTTGCCTTTGCTCTATAGTTGTATTCCATCTAAAGAAA
CAATATCTTTTATCAAACTGCCATTTTTAAT
Run BLAST on NCBI

protein sequence of TCONS_00059380-protein

>TCONS_00059380-protein ID=TCONS_00059380-protein|Name=TCONS_00059380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=207bp
MEYNYRAKANKQAGKSIVTLAHYSEPRPELLNGSASPFTRSHDNSSSLGY
LSFKNTYHVAEARKFNAKVIRDIISEELENHLKDQVYCPKKSPVLAVTMS
DAIKHKVQKVLNNRYRIVTSVFISNEQKQGLDVASKALMAYSTDTFESFS
WSNRTIHAVAMVXNEQKQGLDVASKALMAYSTDTFESFSWSNRTIHAVAM
VFLVYLE
Run BLAST on NCBI

transcript from alignment at scaffold_326:337143..337873

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059380 ID=TCONS_00059380|Name=TCONS_00059380|organism=Clytia hemisphaerica|type=transcript|length=731bp|location=Sequence derived from alignment at scaffold_326:337143..337873 (Clytia hemisphaerica)
ATTAAAAATGGCAGTTTGATAAAAGATATTGTTTCTTTAGATGGAATACA
ACTATAGAGCAAAGGCAAACAAACAAGCTGGAAAATCCATTGTCACTCTC
GCTCACTATTCAGAACCTAGACCAGAATTATTGAACGGATCAGCCAGCCC
GTTTACCCGTAGTCATGACAACTCGAGTAGTTTGGGATATCTATCTTTCA
AGAACACATATCATGTAGCAGAAGCACGAAAATTCAATGCTAAAGTTATT
CGTGATATTATAAGCGAAGAGTTGGAAAACCATTTAAAAGACCAGGTATA
TTGCCCAAAGAAAAGCCCTGTGTTGGCTGTAACCATGAGTGACGCTATTA
AACATAAAGTGCAGAAAGTTCTAAATAACCGGTATCGAATTGTGACGTCA
GTTTTCATATCCAATGAACAAAAACAAGGTTTGGATGTGGCCAGCAAAGC
ATTAATGGCATATTCGACAGACACTTTTGAAAGTTTCTCTTGGAGTAATC
GCACAATACATGCTGTTGCTATGGTCNCCAATGAACAAAAGCAAGGTTTG
GATGTGGCCAGCAAAGCATTAATGGCATATTCGACAGACACTTTTGAAAG
TTTCTCTTGGAGTAATCGCACAATACATGCTGTTGCTATGGTCTTTCTTG
TTTATTTGGAATAAATGTTACTATGTGTGTTTGTTGTTTGTACATATTTG
TTTCcgctttaaacttttttttttaaataaa

Coding sequence (CDS) from alignment at scaffold_326:337143..337873

>TCONS_00059380 ID=TCONS_00059380|Name=TCONS_00059380|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_326:337143..337873 (Clytia hemisphaerica)
ATGGAATACAACTATAGAGCAAAGGCAAACAAACAAGCTGGAAAATCCAT
TGTCACTCTCGCTCACTATTCAGAACCTAGACCAGAATTATTGAACGGAT
CAGCCAGCCCGTTTACCCGTAGTCATGACAACTCGAGTAGTTTGGGATAT
CTATCTTTCAAGAACACATATCATGTAGCAGAAGCACGAAAATTCAATGC
TAAAGTTATTCGTGATATTATAAGCGAAGAGTTGGAAAACCATTTAAAAG
ACCAGGTATATTGCCCAAAGAAAAGCCCTGTGTTGGCTGTAACCATGAGT
GACGCTATTAAACATAAAGTGCAGAAAGTTCTAAATAACCGGTATCGAAT
TGTGACGTCAGTTTTCATATCCAATGAACAAAAACAAGGTTTGGATGTGG
CCAGCAAAGCATTAATGGCATATTCGACAGACACTTTTGAAAGTTTCTCT
TGGAGTAATCGCACAATACATGCTGTTGCTATGGTCNCCAATGAACAAAA
GCAAGGTTTGGATGTGGCCAGCAAAGCATTAATGGCATATTCGACAGACA
CTTTTGAAAGTTTCTCTTGGAGTAATCGCACAATACATGCTGTTGCTATG
GTCTTTCTTGTTTATTTGGAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037386XLOC_037386Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059380-proteinTCONS_00059380-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059380-exon-scaffold_326-1491911889:337143..337873TCONS_00059380-exon-scaffold_326-1491911889:337143..337873Clytia hemisphaericaexon
TCONS_00059380-exon-scaffold_326-1510915933:337143..337873TCONS_00059380-exon-scaffold_326-1510915933:337143..337873Clytia hemisphaericaexon
TCONS_00059380-exon-scaffold_326-1575043694:337143..337873TCONS_00059380-exon-scaffold_326-1575043694:337143..337873Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:337143..337873 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.27186	0.927872	0.846488	1.27988	0.733237	0.362134	0.786418	0.409019	0.343637	1.06412	0.137715	0.452643	0.994431	1.22049	3.35757	2.19505	2.85718	2.56245	4.91289	1.51205	4.46845	3.26933	1.01306	1.3461	2.84587	2.93062	0.186387	0.298376	0.301744	0.153714
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005334Tctex
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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