TCONS_00059364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059364
Unique NameTCONS_00059364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1776

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059364 ID=TCONS_00059364|Name=TCONS_00059364|organism=Clytia hemisphaerica|type=transcript|length=1776bp
CAGatttgataaaacaaaaggaAGAAAATAGATCATAGAGAACCTCTAAA
CTCTATCAAATTGTAATTTTGGTTAGTTGAGAATCATATgaagattgaaa
aaatttgtaagaattcgaaaaaaaaaaattgacaggaAAATAGCCCGCAT
GAAGAATTGTGAAGTACATTAAATGGCTGTTCAGTAACTGTAACTGCTGA
GACCCTCTTGAAAGAGATGGAAGAAATTTCAAGCTACCGTTTTAAATATC
TAATTCCGATAATTATCGGGTTTATATTCTTATTCAATGCATTAGCTATG
ATTGGGTTACATCGGAAACGGAAAGACCGGGATCATTTAATCCGATTATT
GCTAATCTTCTTTTGGAATTTATGTTTTTGTGATATTGCCGTAGGCTTTG
TTCTCATTATCAATACAATCCTAAATCGGGTTCTCGATAATCCTGAAAAT
CCGGTTGTCAATAATTCCGATAATCCAGTTAACAAAAACCAGGATATTGT
AAGATCTATGGAGATCTTGGAAGCAATGATCTTACGCATATCTCTGATTG
TCTCATCGCTGGTATTGTTTATTGTGACTCTTATACGAATAATGGCTTTA
ACAAAAACATATTTTCGGTATCGTGTAAACCGAGCCATAGTCATCAACAT
CAACGCCACGGTATGGGTAGCTGCCTTACTTTTAGCAGGCACCCATAAAt
gtatttttgagttttacCTTTCCAAAAATGGTCACGGAAAATATGAGGAG
TTATTCGTACCGATAATTTTGTTCCCGTCAGTCTTCGTCCTTACGGGATG
CCATTGCGCTATCTTACGTATCCTTCACGTACACGGGATGTCCATGCAAA
CATATATAGAAACCTTACGTAGCTATAACAATACGCGAACGTCTAAGAAG
AAAAATACTTGGAACATTTTTGCGACTTTTGGTCGTTCAGCTGGGAAAGG
TATCAAAAAGAAAGCTAAAGAACCTATTGTCATTGATtctggtccaaaaa
ataaatccaaaaacaaTGTTATTATCGAAAATCATTACGTATGTGATACC
AACAATAAACGTAAACAAAAACTCGACTTGAATACTCAATATGAGATGGA
TAAGGAACGCTGTAAGCGTCAAGTCGAAGCCTTATTCAGCACTAAAGATA
TTTCCTTGTTACGTTTTGAAGTTCTCACTTTTTTGATTTGCTGGTTACCG
CTCTCATTGGTTGAAATGTTCCACGTTATCGGATTTGATGACACGTGGTA
TGACTATTCGGATATGCGCCATTATACTCTTATCATTGTTTACTTGAAAT
CCATACTGACCCCTTTTACGTTATTGGTTCATAAACGGAAAGTGTTTTTG
TGTTTACGTAAGACTCCGTTACGTGCTACGGAAGACAGTACGTTAAAATC
GACTTGTAGTACTGTCACAACTGTTATGTAAATTTGTGAACAAtcaagct
ctagtttagacggccaacTTTCTGTCCTGTCTATTTTAGTTGTTTGCGTA
GACGAAAAGTGGATGCAAAGTTAGTAAACCTTTTCTTGGaagacgtcaaa
agagggcaatgcattaactttagacagccaactatcagaccactttaatt
cacaactagaataggcagggcgaaaagtgggccgtctaaactagaactAA
CTCTCGCTTATCCGAATTCCAGTGGCAAGTCATGTATGTCCGAAACACCG
GAGAGATTCGAGAAATGAAGAGTGTTTTTCAAGGGTTTCCTTTGACGGGA
ACCGATAGAATTAGTTTGAATTGTAG
Run BLAST on NCBI

protein sequence of TCONS_00059364-protein

>TCONS_00059364-protein ID=TCONS_00059364-protein|Name=TCONS_00059364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MEEISSYRFKYLIPIIIGFIFLFNALAMIGLHRKRKDRDHLIRLLLIFFW
NLCFCDIAVGFVLIINTILNRVLDNPENPVVNNSDNPVNKNQDIVRSMEI
LEAMILRISLIVSSLVLFIVTLIRIMALTKTYFRYRVNRAIVININATVW
VAALLLAGTHKCIFEFYLSKNGHGKYEELFVPIILFPSVFVLTGCHCAIL
RILHVHGMSMQTYIETLRSYNNTRTSKKKNTWNIFATFGRSAGKGIKKKA
KEPIVIDSGPKNKSKNNVIIENHYVCDTNNKRKQKLDLNTQYEMDKERCK
RQVEALFSTKDISLLRFEVLTFLICWLPLSLVEMFHVIGFDDTWYDYSDM
RHYTLIIVYLKSILTPFTLLVHKRKVFLCLRKTPLRATEDSTLKSTCSTV
TTVM
Run BLAST on NCBI

transcript from alignment at scaffold_326:464342..466190-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059364 ID=TCONS_00059364|Name=TCONS_00059364|organism=Clytia hemisphaerica|type=transcript|length=1849bp|location=Sequence derived from alignment at scaffold_326:464342..466190- (Clytia hemisphaerica)
CAGATTTGATAAAACAAAAGGAAGAAAATAGATCATAGAGAACCTCTAAA
CTCTATCAAATTGTAATTTTGGTTAGTTGAGAATCATATGAAGATTGAAA
AAATTTGTAAGAATTCGAAAAAAAAAAATTGACAGGAAAATAGCCCGCAT
GAAGAATTGTGAAGTACATTAAATGGCTGTTCAGTAACTGTAACTGCTGA
GACCCTCTTGAAAGAGATGGAAGAAATTTCAAGCTACCGTTTTAAATATC
TAATTCCGATAATTATCGGGTTTATATTCTTATTCAATGCATTAGCTATG
ATTGGGTTACATCGGAAACGGAAAGACCGGGATCATTTAATCCGATTATT
GCTAATCTTCTTTTGGAATTTATGTTTTTGTGATATTGCCGTAGGCTTTG
TTCTCATTATCAATACAATCCTAAATCGGGTTCTCGATAATCCTGAAAAT
CCGGTTGTCAATAATTCCGATAATCCAGTTAACAAAAACCAGGATATTGT
AAGATCTATGGAGATCTTGGAAGCAATGATCTTACGCATATCTCTGATTG
TCTCATCGCTGGTATTGTTTATTGTGACTCTTATACGAATAATGGCTTTA
ACAAAAACATATTTTCGGTATCGTGTAAACCGAGCCATAGTCATCAACAT
CAACGCCACGGTATGGGTAGCTGCCTTACTTTTAGCAGGCACCCATAAAT
GTATTTTTGAGTTTTACCTTTCCAAAAATGGTCACGGAAAATATGAGGAG
TTATTCGTACCGATAATTTTGTTCCCGTCAGTCTTCGTCCTTACGGGATG
CCATTGCGCTATCTTACGTATCCTTCACGTACACGGGATGTCCATGCAAA
CATATATAGAAACCTTACGTAGCTATAACAATACGCGAACGTCTAAGAAG
AAAAATACTTGGAACATTTTTGCGACTTTTGGTCGTTCAGCTGGGAAAGG
TATCAAAAAGAAAGCTAAAGAACCTATTGTCATTGATTCTGGTCCAAAAA
GTAAATCCAAAAACAATGNAAGGTATCAAAAAGAAAGCTAAAGAACCTAT
TGTCATTGATTCTGGTCCAAAAAATAAATCCAAAAACAATGTTATTATCG
AAAATCATTACGTATGTGATACCAACAATAAACGTAAACAAAAACTCGAC
TTGAATACTCAATATGAGATGGATAAGGAACGCTGTAAGCGTCAAGTCGA
AGCCTTATTCAGCACTAAAGATATTTCCTTGTTACGTTTTGAAGTTCTCA
CTTTTTTGATTTGCTGGTTACCGCTCTCATTGGTTGAAATGTTCCACGTT
ATCGGATTTGATGACACGTGGTATGACTATTCGGATATGCGCCATTATAC
TCTTATCATTGTTTACTTGAAATCCATACTGACCCCTTTTACGTTATTGG
TTCATAAACGGAAAGTGTTTTTGTGTTTACGTAAGACTCCGTTACGTGCT
ACGGAAGACAGTACGTTAAAATCGACTTGTAGTACTGTCACAACTGTTAT
GTAAATTTGTGAACAATCAAGCTCTAGTTTAGACGGCCAACTTTCTGTCC
TGTCTATTTTAGTTGTTTGCGTAGACGAAAAGTGGATGCAAAGTTAGTAA
ACCTTTTCTTGGAAGACGTCAAAAGAGGGCAATGCATTAACTTTAGACAG
CCAACTATCAGACCACTTTAATTCACAACTAGAATAGGCAGGGCGAAAAG
TGGGCCGTCTAAACTAGAACTAACTCTCGCTTATCCGAATTCCAGTGGCA
AGTCATGTATGTCCGAAACACCGGAGAGATTCGAGAAATGAAGAGTGTTT
TTCAAGGGTTTCCTTTGACGGGAACCGATAGAATTAGTTTGAATTGTAG

Coding sequence (CDS) from alignment at scaffold_326:464342..466190-

>TCONS_00059364 ID=TCONS_00059364|Name=TCONS_00059364|organism=Clytia hemisphaerica|type=CDS|length=2430bp|location=Sequence derived from alignment at scaffold_326:464342..466190- (Clytia hemisphaerica)
GTATCAAAAAGAAAGCTAAAGAACCTATTGTCATTGATTCTGGTCCAAAA
AATAAATCCAAAAACAATGTTATTATCGAAAATCATTACGTATGTGATAC
CAACAATAAACGTAAACAAAAACTCGACTTGAATACTCAATATGAGATGG
ATAAGGAACGCTGTAAGCGTCAAGTCGAAGCCTTATTCAGCACTAAAGAT
ATTTCCTTGTTACGTTTTGAAGTTCTCACTTTTTTGATTTGCTGGTTACC
GCTCTCATTGGTTGAAATGTTCCACGTTATCGGATTTGATGACACGTGGT
ATGACTATTCGGATATGCGCCATTATACTCTTATCATTGTTTACTTGAAA
TCCATACTGACCCCTTTTACGTTATTGGTTCATAAACGGAAAGTGTTTTT
GTGTTTACGTAAGACTCCGTTACGTGCTACGGAAGACAGTACGTTAAAAT
CGACTTGTAGTACTGTCACAACTGTTATGTAAATGGAAGAAATTTCAAGC
TACCGTTTTAAATATCTAATTCCGATAATTATCGGGTTTATATTCTTATT
CAATGCATTAGCTATGATTGGGTTACATCGGAAACGGAAAGACCGGGATC
ATTTAATCCGATTATTGCTAATCTTCTTTTGGAATTTATGTTTTTGTGAT
ATTGCCGTAGGCTTTGTTCTCATTATCAATACAATCCTAAATCGGGTTCT
CGATAATCCTGAAAATCCGGTTGTCAATAATTCCGATAATCCAGTTAACA
AAAACCAGGATATTGTAAGATCTATGGAGATCTTGGAAGCAATGATCTTA
CGCATATCTCTGATTGTCTCATCGCTGGTATTGTTTATTGTGACTCTTAT
ACGAATAATGGCTTTAACAAAAACATATTTTCGGTATCGTGTAAACCGAG
CCATAGTCATCAACATCAACGCCACGGTATGGGTAGCTGCCTTACTTTTA
GCAGGCACCCATAAATGTATTTTTGAGTTTTACCTTTCCAAAAATGGTCA
CGGAAAATATGAGGAGTTATTCGTACCGATAATTTTGTTCCCGTCAGTCT
TCGTCCTTACGGGATGCCATTGCGCTATCTTACGTATCCTTCACGTACAC
GGGATGTCCATGCAAACATATATAGAAACCTTACGTAGCTATAACAATAC
GCGAACGTCTAAGAAGAAAAATACTTGGAACATTTTTGCGACTTTTGGTC
GTTCAGCTGGGAAAGGTATCAAAAAGAAAGCTAAAGAACCTATTGTCATT
GATTCTGGTCCAAAAAATAAATCCAAAAACAATGTTATTATCGAAAATCA
TTACGTATGTGATACCAACAATAAACGTAAACAAAAACTCGACTTGAATA
CTCAATATGAGATGGATAAGGAACGCTGTAAGCGTCAAGTCGAAGCCTTA
TTCAGCACTAAAGATATTTCCTTGTTACGTTTTGAAGTTCTCACTTTTTT
GATTTGCTGGTTACCGCTCTCATTGGTTGAAATGTTCCACGTTATCGGAT
TTGATGACACGTGGTATGACTATTCGGATATGCGCCATTATACTCTTATC
ATTGTTTACTTGAAATCCATACTGACCCCTTTTACGTTATTGGTTCATAA
ACGGAAAGTGTTTTTGTGTTTACGTAAGACTCCGTTACGTGCTACGGAAG
ACAGTACGTTAAAATCGACTTGTAGTACTGTCACAACTGTTATGTAAATG
GAAGAAATTTCAAGCTACCGTTTTAAATATCTAATTCCGATAATTATCGG
GTTTATATTCTTATTCAATGCATTAGCTATGATTGGGTTACATCGGAAAC
GGAAAGACCGGGATCATTTAATCCGATTATTGCTAATCTTCTTTTGGAAT
TTATGTTTTTGTGATATTGCCGTAGGCTTTGTTCTCATTATCAATACAAT
CCTAAATCGGGTTCTCGATAATCCTGAAAATCCGGTTGTCAATAATTCCG
ATAATCCAGTTAACAAAAACCAGGATATTGTAAGATCTATGGAGATCTTG
GAAGCAATGATCTTACGCATATCTCTGATTGTCTCATCGCTGGTATTGTT
TATTGTGACTCTTATACGAATAATGGCTTTAACAAAAACATATTTTCGGT
ATCGTGTAAACCGAGCCATAGTCATCAACATCAACGCCACGGTATGGGTA
GCTGCCTTACTTTTAGCAGGCACCCATAAATGTATTTTTGAGTTTTACCT
TTCCAAAAATGGTCACGGAAAATATGAGGAGTTATTCGTACCGATAATTT
TGTTCCCGTCAGTCTTCGTCCTTACGGGATGCCATTGCGCTATCTTACGT
ATCCTTCACGTACACGGGATGTCCATGCAAACATATATAGAAACCTTACG
TAGCTATAACAATACGCGAACGTCTAAGAAGAAAAATACTTGGAACATTT
TTGCGACTTTTGGTCGTTCAGCTGGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037370XLOC_037370Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059364-proteinTCONS_00059364-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059364-exon-scaffold_326-1575043694:465242..466190TCONS_00059364-exon-scaffold_326-1575043694:465242..466190Clytia hemisphaericaexon
TCONS_00059364-exon-scaffold_326-1575043694:464342..465168TCONS_00059364-exon-scaffold_326-1575043694:464342..465168Clytia hemisphaericaexon
TCONS_00059364-exon-scaffold_326-1510915933:465242..466190TCONS_00059364-exon-scaffold_326-1510915933:465242..466190Clytia hemisphaericaexon
TCONS_00059364-exon-scaffold_326-1510915933:464342..465168TCONS_00059364-exon-scaffold_326-1510915933:464342..465168Clytia hemisphaericaexon
TCONS_00059364-exon-scaffold_326-1491911889:465242..466190TCONS_00059364-exon-scaffold_326-1491911889:465242..466190Clytia hemisphaericaexon
TCONS_00059364-exon-scaffold_326-1491911889:464342..465168TCONS_00059364-exon-scaffold_326-1491911889:464342..465168Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_326supercontigscaffold_326:464342..466190 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.845339	0.596109	0.232504	0.229993	1.00756	0.532353	1.54272	2.01654	0.76315	1.18432	1.60565	2.37928	0.933566	0.453484	2.30123	2.45578	0.681641	0.578747	0.264741	0.402957	0.218902	0.128807	0.752817	0.590017	0.632012	0.608593	0.062368	0.0662635	0.301551	0.307233
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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