TCONS_00059427 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059427
Unique NameTCONS_00059427
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059427 ID=TCONS_00059427|Name=TCONS_00059427|organism=Clytia hemisphaerica|type=transcript|length=266bp
CCTGTAGTAGTCTTATTAGATATGAAAAGACGATACGATTACTATCCGGT
AAAGAGTTCACGATATTTAGACAGATCTCCGGTGAGTCTGCATTGTGTAT
GCATTGGTCGTAGAATCGTTGCGGTATTAGTGGCTCGTACAGGTCGCGAA
ACCATAGTTTGAGAAGAGAGGCCGGTGTGTGAGGGTCCTTGACATTGTTC
TTGGTTCCTTCCCATTTGTCGATTAGTAGTTTGAGTGCGTTAACGCTATC
GATATCACCAGGTACT
Run BLAST on NCBI

transcript from alignment at scaffold_327:150399..150728-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059427 ID=TCONS_00059427|Name=TCONS_00059427|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at scaffold_327:150399..150728- (Clytia hemisphaerica)
CCTGTAGTAGTCTTATTAGATATGAAAAGACGATACGATTACTATCCGGT
AAAGAGTTCACGATATTTAGACAGATCTCCGGTGAGTCTGCATTGTGTAT
GCATTGGTCGTAGAATCGTTGCGGTATTAGTGGCTCGTACAGGTCGCGAA
ACCATAGTTTGAGAAGAGAGGCCGGTGTGTGAGGGTCCTNTTAGTGGCTC
GTACAGGTCACGAAACCATAGTTTGAGAAGAGAGGCCGGTGTGTGAGGGT
CCTTGACATTGTTCTTGGTTCCTTCCCATTTGTCGATTAGTAGTTTGAGT
GCGTTAACGCTATCGATATCACCAGGTACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037408XLOC_037408Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059427-exon-scaffold_327-1575043694:150559..150728TCONS_00059427-exon-scaffold_327-1575043694:150559..150728Clytia hemisphaericaexon
TCONS_00059427-exon-scaffold_327-1575043694:150399..150494TCONS_00059427-exon-scaffold_327-1575043694:150399..150494Clytia hemisphaericaexon
TCONS_00059427-exon-scaffold_327-1510915933:150559..150728TCONS_00059427-exon-scaffold_327-1510915933:150559..150728Clytia hemisphaericaexon
TCONS_00059427-exon-scaffold_327-1510915933:150399..150494TCONS_00059427-exon-scaffold_327-1510915933:150399..150494Clytia hemisphaericaexon
TCONS_00059427-exon-scaffold_327-1491911889:150559..150728TCONS_00059427-exon-scaffold_327-1491911889:150559..150728Clytia hemisphaericaexon
TCONS_00059427-exon-scaffold_327-1491911889:150399..150494TCONS_00059427-exon-scaffold_327-1491911889:150399..150494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:150399..150728 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.04382	7.62449	8.2835	2.54968	21.98	12.1836	14.8606	26.6304	19.7034	12.0648	10.1433	20.486	24.6759	16.5308	18.4466	19.9881	18.9449	22.8626	18.607	17.5065	19.6183	26.844	16.9169	9.93456	21.5282	17.996	31.1524	3.39014	12.7244	2.89918
Blast
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BLAST of TCONS_00059427 vs. Swiss-Prot (Human)
Match: RHG39 (Rho GTPase-activating protein 39 OS=Homo sapiens GN=ARHGAP39 PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 4.585e-31
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = -2 
Query:    2 VPGDIDSVNALKLLIDKWEGTKNNVKDPHTPASLLKLWFRDLYEPLIPQRFYDQCIHNADSPEICLNIVNSLPDSNRIVFSYLIRLLQ 265
            VPGDID VNALKL +D+W+     ++DPH PASLLKLW+R+L EPLIP  FY+QCI + DSPE  + +V++LP  NR+V  YLIR LQ
Sbjct:  933 VPGDIDEVNALKLQVDQWK-VPTGLEDPHVPASLLKLWYRELEEPLIPHEFYEQCIAHYDSPEAAVAVVHALPRINRMVLCYLIRFLQ 1019
The following BLAST results are available for this feature:
BLAST of TCONS_00059427 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG394.585e-3160.23Rho GTPase-activating protein 39 OS=Homo sapiens G... [more]
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