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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059431 ID=TCONS_00059431|Name=TCONS_00059431|organism=Clytia hemisphaerica|type=transcript|length=2860bp
GTGATTTTAGACCAGATTCGATTTTTGTTATGATACATATTTGTTGATTT
CATATTTTAAGTAACCGGTTCTAATCTTCACAACAGTACATTTTTGTCGT
CGTACAAGAAAATAATGGaaattgtaaataaaaaaagcCTGACAATTCAT
TCGTTCctaaaagactttgaaaataaattccctAATACAAATATATTGTT
AACGGCAACGTTTTCGTTCACTTGATGGAATATTATCAGGATGTTTCACT
CGTGGATGATGAAGGTTGGAACGTTCTTCATTGGGTTGGTATGAATNAga
ctttgaaaagaaattccCTAATACAAATATATTGTTAACAGCAACGTTTT
CGTTCACTTGATGGAATATCATCAGGATGTTTCACTCGTGGATGATGAAG
GTTGGAACGTTCTTCATTGGGTTGGTATGAATGGAACAGTTCGTCATTTG
GAAAAGTTTGGTCAACAAACAATCGAAATGTTGATCTTCACAACAGTACA
TTTTTGTCGTCGTACAAGAAAATAATGGAAattgtatataaaaaaagcCT
GACAATTCATTCGTTCCTAAAGGACTTTGGGAAGAAATTCTCTAATACAA
ATATATTGTTGACGGAACAAGAAAAACGGAATGGAAAATCTCACTCTTGT
GGATGTTGTCGAAACAATACAGAGACAGAGACAGCGACAGAGACAGTGAC
AGATACAGAGACAGTGACAGAGAGATAGAGACTTTTACAGATGCAAGAGA
AACATGTCAAGAACTTCCACCGATTAAATATCTGAATACAGtacagaaaa
ttgaaaaaaatacacgTGTCAAGAAATCACGTGCCAAAAAAAAGGCAAct
gagaaaaacaaaataatgaggaaatttaatttgttatttttgttttcagc
caCTTCAGCGTACTACTTCACATCACAGGAGCAGACTTTTATAGATGCAA
GAGAAACATGTCAAGCACTTCCACCGTTCAATGGAGTGCAATTTgatctt
gttgttgttgacacTACGTTCAGTCGGCCAAATAAACACTAGAATGTTGC
GAACAAAACTTTTGGACAGTACATTCTCTTTACCAAACAAATGGTCATTG
AAGACAATATTTCGTTAttgtttatttattaatttattcatttatttcat
tattatttatttatttatttatttatttgtttgcgATTTTGTTGTGTTGC
TCTGATGGGTATGGAGGGGCTACCCCCGAAAGCCTTTAGCATCATAGGTT
TGTAATAAGAGCAAATAAATATGTTTTAATGTTTCTTAGCTTTTATCTGT
TTTGTGCAATGCTCTCCTGGCAATTAATCATTATAATTGGACAAAAAAAT
GGACTACTAACAACATGGCGGGCTGCTATCCAAGATGTAGCTGAGACAAC
GAACTTCCAATACTGTCAATAGAAAAGAATCACTACGGGACATAATTCAG
CAAACTTTCtgcaaaaactgaaaaagaaactAAACCTTTCAAGATTGTCT
GAAGTGATGGCCAAAAGTTCTATCATGTGATTTTCATTTGTTATGATACA
TATTTGTTATGATACATATTTGTTGATTTCATATTTTAAGTAACCGGTTC
TAATCTTCACAACAGTACATTTTTGTCGTCGTACAAGAAAATAATGGaaa
ttgtaaataaaaaaagcCTGACAATTCATTCGTTCctaaaagactttgaa
aataaattccctAATACAAATATATTGTTAACGGCAACGTTTTCGTTCAC
TTGATGGAATATTATCAGGATGTTTCACTCGTGGATGATGAAGGTTGGAA
CGTTCTTCATTGGGTTGGTATGAATGGAACAGTTCgtcatttggaaaaat
ttggtcAACAAACAATCGAAATGTTGATCAATGGAACAGACAAATTTAAA
CGAACGTAAGTAAGTATTTtaagtatttaaaaaataatggtTACATTACG
TCTTATTTACTTTATTATGGAAACATGATATTTTGTTCACAGCTTTTggt
gaaaacaacaaaaacctAAGTCCATGAAGGAAAACAAAGGAAGTATATTC
GTGGCAGGATGGGGTGGTCAAGAGAAGAACTATCGACTGTTGTTGTTGAC
ACTAGAGTAAATGGACTACTAACAACATGGTGTCTTGCTATCCAAGATGT
AGCTGAGACAACAAACTTTCAATGCAAAGAATCACTACGGGAACACTTTT
ACCANCTACTAACAACATGGTGTCTTGCTATCCAAGATGTAGCTGAGACA
ACAAACTTTCAATGCAAAGAATCACTACGGGAACACTTTTACCAGGGAAA
CCTTTATTAGGACatggaaggaaaaaaaaactttaaagagtgcaaaagaa
tatttttttaaatttttgcctCGTATAATTTGAAAGCTGCTTGCAAGGAA
GTCTGTTAACAGACGAAAGAGCAAACGAACATATGAACGAACCTTTCAAG
AAGCTTTTCAAAAACCAAACATCATCAACTCGTTGCGTAACGGTTGCAGT
CAAACACTTCTCAAGAGAGTCCATGAATTTTGGAcgaaaagaaattcaag
aaattcaaagaaatttaatttcaaaaaccaAACATCATCAACTCGTTGCG
TAACGGTTACAGTCAAACACTTCTCGTGAAAGTCCATAAATTTTGGATGA
AAAGAAATTcacgaaattcaaaaaaaattttttcaaaaatccaaacATCA
TCAACTCGTTGCGTAAAGGTTGCAGTCAAACACTTCTTGTGAaagtcaat
aaattttgaaagaaaagaacCCAAAATCCAAACGTAATCAACTCGTTACA
TAGAGGTCAACTCGAAATGGAGATAAAAGTTCTAAATCTTTAAATATACT
TTTTATATTT Run BLAST on NCBI transcript from alignment at scaffold_327:211935..218400- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059431 ID=TCONS_00059431|Name=TCONS_00059431|organism=Clytia hemisphaerica|type=transcript|length=6466bp|location=Sequence derived from alignment at scaffold_327:211935..218400- (Clytia hemisphaerica)
GTGATTTTAGACCAGATTCGATTTTTGTTATGATACATATTTGTTGATTT
CATATTTTAAGTAACCGGTTCTAATCTTCACAACAGTACATTTTTGTCGT
CGTACAAGAAAATAATGGAAATTGTAAATAAAAAAAGCCTGACAATTCAT
TCGTTCCTAAAAGACTTTGAAAATAAATTCCCTAATACAAATATATTGTT
AACGGCAACGTTTTCGTTCACTTGATGGAATATTATCAGGATGTTTCACT
CGTGGATGATGAAGGTTGGAACGTTCTTCATTGGGTTGGTATGAATNAGA
CTTTGAAAAGAAATTCCCTAATACAAATATATTGTTAACAGCAACGTTTT
CGTTCACTTGATGGAATATCATCAGGATGTTTCACTCGTGGATGATGAAG
GTTGGAACGTTCTTCATTGGGTTGGTATGAATGGAACAGTTCGTCATTTG
GAAAAGTTTGGTCAACAAACAATCGAAATGTTGATCTTCACAACAGTACA
TTTTTGTCGTCGTACAAGAAAATAATGGAAATTGTATATAAAAAAAGCCT
GACAATTCATTCGTTCCTAAAGGACTTTGGGAAGAAATTCTCTAATACAA
ATATATTGTTGACGGAACAAGAAAAACGGAATGGAAAATCTCACTCTTGT
GGATGTTGTCGAAACAATACAGAGACAGAGACAGCGACAGAGACAGTGAC
AGATACAGAGACAGTGACAGAGAGATAGAGACTTTTACAGATGCAAGAGA
AACATGTCAAGAACTTCCACCGATTAAATATCTGAATACAGTACAGAAAA
TTGAAAAAAATACACGTGTCAAGAAATCACGTGCCAAAAAAAAGGCAACT
AAGAAAAACAAAATAATGAGGAAATTTAATNGAAAATTGAAACAAATACA
CGTGTCAAGAAATCACGTGCCAAAAAAAAGGCAACTGAGAAAAACAAAAT
AATGAGGAAATTTAATTTGTTATTTTTGTTTTCAGCCACTTCAGCGTACT
ACTTCACATCACAGGAGCAGACTTTTATAGATGCAAGAGAAACATGTCAA
GCACTTCCACCGTTCAATGGAGTGCAATTTGATCTTGTTGTTGTTGACAC
TACGTTCAGTCGGCCAAATAAACACTAGAATGTTGCGAACAAAACTTTTG
GACAGTACATTCTCTTTACCAAACAAATGGTCATTGAAGACAATATTTCG
TTATTGTTTATTTATTAATTTATTCATTTATTTCATTATTATTTATTTAT
TTATTTATTTATTTGTTTGCGATTTTGTTGTGTTGCTCTGATGGGTATGG
AGGGGCTACCCCCGAAAGCCTTTAGCATCATAGGTTTGTAATAAGAGCAA
ATAAATATGTTTTAATGTTTCTTAGCTTTTATCTGTTTTGTGCAATGCTC
TCCTGGCAATTAATCATTATAATTGGACAAAAAAATGGACTACTAACAAC
ATGGCGGGCTGCTATCCAAGATGTAGCTGAGACAACGAACTTCCAATACT
GTCAATAGAAAAGAATCACTACGGGACATAATTCAGCAAACTTTCTGCAA
AAACTGAAAAAGAAACTAAACCTTTCAAGATTGTCTGAAGTGATGGCCAA
AAGTTCTATCATGTGATTTTCATTTGTTATGATACATATTTGTTATGATA
CATATTTGTTGATTTCATATTTTAAGTAACCGGTTCTAATCTTCACAACA
GTACATTTTTGTCGTCGTACAAGAAAATAATGGAAATTGTAAATAAAAAA
AGCCTGACAATTCATTCGTTCCTAAAAGACTTTGAAAATAAATTCCCTAA
TACAAATATATTGTTAACGGCAACGTTTTCGTTCACTTGATGGAATATTA
TCAGGATGTTTCACTCGTGGATGATGAAGGTTGGAACGTTCTTCATTGGG
TTGGTATGAATGGAACAGTTCGTCATTTGGAAAAATTTGGTCAACAAACA
ATCGAAATGTTGATCAATGGAACAGACAAATTTAAACGAACGTAAGTAAG
TATTTTAAGTATTTAAAAAATAATGGTTACATTACGTCTTATTTACTTTA
TTATGGAAACATAATATTTTGTTCACAGCTTTTGGTGTCAATGGTGAAAA
CAACAAAAAACCTAAGTCCATGAAGGAAAACAAAGGAAGTGCCGGGTGTC
CCAGAAAAAAAGTTCCGCCCTTTGAAGTGAATTTTCTCGAGTTCTATGAA
CTTTTAAATAATGAATCTTTTTGCATTGGAAAGAGGAAGGATAAACTTAA
ATTTTGAGGGGTCATTTATTAAANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTGATCAAAAGTTATAGCCTAAATGCTAAAACATCA
CTTTTCAAAAAAGTCAAAAAAAGACGAAAAAAGAGGAGATCAAATCATCA
TAAAGAAAGCACTTCTGTTGCCAATTTATTTACGCTCAAAGTTTTTTCCA
TACAGTTCTTTAAGGTGTCTTTATTTTATTGTTAATTCCTTTTCTTTTCT
TTGTCTAATTTAACGAGCTCCCATGGGCATAATCAAGGGGCACGAGATCC
AAACATTCATCAAAATCTTACCAAGAGTTTTCAAAGCTTTTTTTGTACAC
ATTGTTGAGAGTGAGAAGGAAAAAGCTTGTATCAAGTGTGTTGAGAAAAA
TGCCTCGCCTAACTATTCCTCAAAAAACTTGGGTGTGTATTGAGTTTGCA
CGCATAAATAATGCCGCAAAAGTACTGAGACGATGGCCTAACCAATGGCC
CAATGTTCCTCCTCCGACAAGAGAAGCCATACTCAAAAACTTTCGAAAAT
TTGGTAGAGAAGGAACTTGCCACAACCTCAACAAAGGTCGAAGTGGCAGA
AGGCCCACTGTGATGACACAGGCGAACAAGAATATGGTTAGAAGATCTTT
ACAGCAAAATGGTCGTCGTTCATGTCGAAGGAACGGGGTCAACCTTACTC
GATCCACTTTCAATCGAATCGTCAAGGAAATAAAATTTCATCCTTATGTG
TTGGTAAAGAAGTAAAAACTAAAAAATCAAGATCCAGCAAGAAGATTAAC
CTTTTGCAACTGGTTCAGAAATGAATAATGCAAATTTTTTATCAAATTTG
ATCATTTCTGACGAGGCAACTTTCAGCATGAACTCTGATGTGAATACTCG
TAATGTTATTTACTATTCTGAACATGGTCAATGGCATCCCGATGACCACT
ATGTGGAATTTGAGCAAGGGGCGGATCAGGTGATGGTTTGGATGGGCTTA
ACAGGAAATGGATTAGTGTTGGGTCCACATTTTGTTCAGGGGAGGTTGGA
TACAAGGGAATATATGAGAATCGTGTGTTATAATGTCATTCAACAAGACT
TTGTGAGGCTTGGGATCAATAAGGCAACGTCTTGGTGGATTTAAGACGGA
GCAACTCCCCACACAAGCAACGCTTCACTTCGCTATCTTCGTGGTCAGTT
TCCCAGAAAGGTGGTCAGCAATAGAGGAGATGTTGAGTGGCCCCCAAGAT
CGCCTGATCTCACTATATGTGATTTCTTTTTATGGGCTTACATGAAACCG
CAGATCTGGGAACAACCCCAAAATTTGCAACCTCAGACCCTTAATCAATT
GAAAGCTTCAATTAGAAATGTTGCAGCTAACCTCGACCCTCAAATGGTTC
AAAATGCTTTTGCAGGAATGATTAATCGTGTAAATAAGTGCTTTGGAAAA
AATGGAAATACATTTCCTGATGAATAAAAAACCTTTTGTGTCTTTGTCTT
AGAATGAATTTAATCCCCTCTTTTTCGTCTTTTTTAGACTTTTTTTGAAA
AGTGATGTTTTAGCATTTAGGTCATAACTTTTAATCAAGTTGACTTAATT
TAATAAATAACCCCTCAAATTTTAAGTTTATCCTTCCCCTTTCTAATGCA
AAAAGATTCATTATCTAAAAGTTCATAGAACTCGAGAAAATTCACTTCAA
AGAGCGACTGTTGTAAGCCACTTCAGCGTATTTCTTCACATCAGAGGAAG
AGACTTTTAAAAATGCAAGAGAAACATGTCAAGAACTTCCACCGATTAAT
GGCGTACAATTTGATCTTGTTGTTGTTGACACTATGTTCAGTCGGCCACC
TTTTCAGAATTAGCATAACTTGTGGTTCGAGTATTTTTCGACCGTTTATG
ACAAGGGGGCAAGATACCCGTCCGACATAAAATAAGTTTTGTAACAGACC
CCCCTTTTCTTAACATTGAGTTTGAAACATCCCTTTCTCACAGACCTGGT
AGGATTTTTTGAGCTGGGGGTAAAAATAACGGATCAAAAGTCAATGGGGA
TTGATATTGTTTGTTATCACTGGGATTTGAATTCCATTGTTTTGAGCCAG
AAAATTCAGTGGGGAAGGAAAAAATAGCACAATATTTTAGCAGTGANCTT
CAGCGTATTTCTTCACATCAGAGGAGGAGACTTTTACAAATGCAAGAGAA
ACATGTCAAGCACTTCCACCGATTAATGGAGTGCAATTTAATCTTGTTGT
TGTTGACACCATGTTCAGTCGGCCAAATGAACACTAGAATGTTGCGAACC
AAACTTTTGGACAGTACATTCTCTTTACCAAACAAATGGTCATTGAAGAC
ATTATTTCGTTATTGTTTATTTATTCATTTATTTCATTATTATTCATTTA
TTTACTTATTTATTTATTTATATTTGATTTTGTTATGTTGCTCTGATGGG
TATGGAGGGGCTACCCCCGAAAGCCTTTGATATCATAGGTTTACAATAAG
AGCAAATAAATGATTTTTAATGTTCCTTAGCTTTTATCTGTTTTGTGCAA
TGCTCTCCTGGCAATTAATCATTATAATTGGACAAAAAAATGGACTACTA
ACAACATGGCAAACTTCCAATACAGTCAATAGAAAAGAATCACTATGGGA
CATAATTCAGCAAACTTTCTGCGAAAAACTGATAACGAAACTAAATTTTT
CAAGATTGTCTAAAGTGATGGCCAAAAGTTCTATCATGTGATTTTAGACC
AGATTCGATTTTTGTTATGATACATATTTGTTGATTTCATATTTTAAGTA
ACCGGTTCTAATCTTCACAACAGTACATTTTTGTCGTCGTACAAGAAAAT
AATGGAAATTATAAATCAGAAAAGCCTGATAATTCATTCGTTCCTAAAGG
ACTTTGGAAATAAATTCCCTAATACAAATATATTGTTAATGGCAACGTTT
TCGCTCACTTGATGGAATATCAACAGGATGTTTCACTCGTGGATGATGAA
GGTTGGAACGTTCTTCATTAGGCTGGTATGAATGGAACAGTTCGTCATTT
GGAAAAATTTGGTCAACAAACAATCGAAATGTTGATCAATGGAACAGACA
AATTTAAACGAACGTAAGTAAGTATTTTAAGTATTTAAAAAATAATGGTT
ACATTACGTCTTATTTANTAAGTAAGTATTTTAAGTATCTAAAAATAATG
ATTACGTCTTATTTACTTTATTATGGAAACATGATATTTTGTTCACAGCT
TTTGGTGAAAACAACAAAAACCTAAGTCCATGAAGGAAAACAAAGGAAGT
ATATTCGTGGCAGGATGGGGTGGTCAAGAGAAGAACTATCGACTGTTGTT
GTTGACACTAGAGTAAATGGACTACTAACAACATGGTGTCTTGCTATCCA
AGATGTAGCTGAGACAACAAACTTTCAATGCAAAGAATCACTACGGGAAC
ACTTTTACCANCTACTAACAACATGGTGTCTTGCTATCCAAGATGTAGCT
GAGACAACAAACTTTCAATGCAAAGAATCACTACGGGAACACTTTTACCA
GGGAAACCTTTATTAGGACATGGAAGGAAAAAAAAACTTTAAAGAGTGCA
AAAGAATATTTTTTTAAATTTTTGCCTCGTATAATTTGAAAGCTGCTTGC
AAGGAAGTCTGTTAACAGACGAAAGAGCAAACGAACATATGAACGAACCT
TTCAAGAAGCTTTTCAAAAACCAAACATCATCAACTCGTTGCGTAACGGT
TGCAGTCAAACACTTCTCAAGAGAGTCCATGAATTTTGGACGAAAAGAAA
TTCAAGAAATTCAAAGAAATTTAATTTCAAAAACCAAACATCATCAACTC
GTTGCGTAACGGTTACAGTCAAACACTTCTCGTGAAAGTCCATAAATTTT
GGATGAAAAGAAATTCACGAAATTCAAAAAAAATTTTTTCAAAAATCCAA
ACATCATCAACTCGTTGCGTAAAGGTTGCAGTCAAACACTTCTTGTGAAA
GTCAATAAATTTTGAAAGAAAAGAACCCAAAATCCAAACGTAATCAACTC
GTTACATAGAGGTCAACTCGAAATGGAGATAAAAGTTCTAAATCTTTAAA
TATACTTTTTATATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059431-exon-scaffold_327-1575043694:217557..218400 | TCONS_00059431-exon-scaffold_327-1575043694:217557..218400 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1575043694:216341..217470 | TCONS_00059431-exon-scaffold_327-1575043694:216341..217470 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1575043694:211935..212820 | TCONS_00059431-exon-scaffold_327-1575043694:211935..212820 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1510915933:217557..218400 | TCONS_00059431-exon-scaffold_327-1510915933:217557..218400 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1510915933:216341..217470 | TCONS_00059431-exon-scaffold_327-1510915933:216341..217470 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1510915933:211935..212820 | TCONS_00059431-exon-scaffold_327-1510915933:211935..212820 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1491911889:217557..218400 | TCONS_00059431-exon-scaffold_327-1491911889:217557..218400 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1491911889:216341..217470 | TCONS_00059431-exon-scaffold_327-1491911889:216341..217470 | Clytia hemisphaerica | exon |
| TCONS_00059431-exon-scaffold_327-1491911889:211935..212820 | TCONS_00059431-exon-scaffold_327-1491911889:211935..212820 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:211935..218400 - |
Blast
The following BLAST results are available for this feature:
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