TCONS_00059477 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059477
Unique NameTCONS_00059477
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length394

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059477 ID=TCONS_00059477|Name=TCONS_00059477|organism=Clytia hemisphaerica|type=transcript|length=394bp
TAGAAGATGAACCTAGCCTAAGTCATCTACGTTCATAATTTTCAGTGGTA
CCGATATCTTTTTACCGATATCATTTTGCAATTCCAtggctttttcattt
tttcaaccaaATCTATCAATGTATGTGTAAATCCCCAGGCTTATTTTTAA
AGATATATAATGGTAATTTTTACTTGATTactttttaatctttttgttta
ttttttgtgaGAAATTGTGGTAAAAGAACTATTTTcacagtttttttttc
tcaacatgtattatatattttttgagtaAGTGTCATCTTTACTGCGCGCT
AACAAAGGtgcaaggaaagaaaaattgaaagtctTTTTCATTGATGATAA
TgattttttgttattcttttcaCTTGTTTCGTTAACTTTACTCG
Run BLAST on NCBI

transcript from alignment at scaffold_327:369176..369569

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059477 ID=TCONS_00059477|Name=TCONS_00059477|organism=Clytia hemisphaerica|type=transcript|length=394bp|location=Sequence derived from alignment at scaffold_327:369176..369569 (Clytia hemisphaerica)
CGAGTAAAGTTAACGAAACAAGtgaaaagaataacaaaaaatcATTATCA
TCAATGAAAAagactttcaatttttctttccttgcaCCTTTGTTAGCGCG
CAGTAAAGATGACACTtactcaaaaaatatataatacatgttgagaaaaa
aaaactgtgAAAATAGTTCTTTTACCACAATTTCtcacaaaaaataaaca
aaaagattaaaaagtAATCAAGTAAAAATTACCATTATATATCTTTAAAA
ATAAGCCTGGGGATTTACACATACATTGATAGATttggttgaaaaaatga
aaaagccaTGGAATTGCAAAATGATATCGGTAAAAAGATATCGGTACCAC
TGAAAATTATGAACGTAGATGACTTAGGCTAGGTTCATCTTCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037440XLOC_037440Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059477-exon-scaffold_327-1491911889:369176..369569TCONS_00059477-exon-scaffold_327-1491911889:369176..369569Clytia hemisphaericaexon
TCONS_00059477-exon-scaffold_327-1510915933:369176..369569TCONS_00059477-exon-scaffold_327-1510915933:369176..369569Clytia hemisphaericaexon
TCONS_00059477-exon-scaffold_327-1575043694:369176..369569TCONS_00059477-exon-scaffold_327-1575043694:369176..369569Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_327supercontigscaffold_327:369176..369569 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.08998	4.94586	3.31629	6.16302	0.262938	0	0.248913	0.699241	2.74012	4.46086	2.03283	1.8817	1.74173	1.5362	2.34413	0.369187	1.85177	2.32969	1.48838	0.448251	2.74931	3.06345	4.24651	3.00696	0	0	5.72116	3.76268	5.05963	3.17307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059477 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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