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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059445 ID=TCONS_00059445|Name=TCONS_00059445|organism=Clytia hemisphaerica|type=transcript|length=961bp
CTTGtggaatatttaattttttagtcattttgtataatattttttgatga
tataTTAGCACCAATATTCTCAAGACTTCTTTAAAAGGTTTCTACGTATG
AAGTAGGCTCCAACCTCCTTCACTGGTCTACCATGTTGGTCACGACTTTC
GAATTCGAAACGCGAAATTCAGTCTATCAGCCTGCAGTCTGCGAAAAGCC
CACCTCCTGGATCAAATCAAATATTCCTTTTTGCTGTCAAAAGAACAGAA
TTTGAACCATGTCTGCCAAATGTGTATTGGAAGGAGAAGTAGTCAAAGGT
ACAATCACCTTCAAAGATCTTGGTAATGGTCAAACACATGTCACAGGTGA
AGTAACAGGATTGGCCCCAGGTTTACATGGATTTCATGTTCATCAATTTG
GTGATTACTCTGGCGGATGTGGAACCACTGGTGGTCATTTCAACCCTTCT
GGTAAAGAACACGGAGGACCAGATCAGGAGAACCGACATGCTGGTGATCT
TGGTAACATTACAGCTGACTCAAACGGTGTTGCTAAAGTTGATATCAAAG
ACAGCCAAATTCCATTGACTGGGGTAAACAGTATTGTTGGCAGAGCCGTT
GTGGTGCACAAAGATGTTGATGATCTTGGAGCTGGTGGTTTTGAAGACAG
CAAAACAACAGGTCATGCTGGTGCTCGATTAGCTTGTGGTGTTGTTGGCC
TTTCAAAATGACTACAACAATCTCAGCTTTGtagaaaattatgtttttgt
ATTATATTATTTCAGATCACATTTGTGCAATCGACTCTAATGCTTTAGCA
GCAGGAGCTCATATataagttttattttatatttaataATGAAGTCCTTC
CAGGCAAattttgtattacttttttaACAATAAGATTCTTAGATTCAAAA
TAACTATTAGCTGTGGGTAGAAATGTTGTTAATTTGTAGCTAGGGCTCAG
TGATTGGTAAA Run BLAST on NCBI protein sequence of TCONS_00059445-protein >TCONS_00059445-protein ID=TCONS_00059445-protein|Name=TCONS_00059445-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MSAKCVLEGEVVKGTITFKDLGNGQTHVTGEVTGLAPGLHGFHVHQFGDY
SGGCGTTGGHFNPSGKEHGGPDQENRHAGDLGNITADSNGVAKVDIKDSQ
IPLTGVNSIVGRAVVVHKDVDDLGAGGFEDSKTTGHAGARLACGVVGLSK Run BLAST on NCBI transcript from alignment at scaffold_327:380771..396553- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059445 ID=TCONS_00059445|Name=TCONS_00059445|organism=Clytia hemisphaerica|type=transcript|length=15783bp|location=Sequence derived from alignment at scaffold_327:380771..396553- (Clytia hemisphaerica)
CTTGTGGAATATTTAATTTTTTAGTCATTTTGTATAATATTTTTTGATGA
TATATTAGCACCAATATTCTCAAGACTTCTTTAAAAGGTTTCTACGTATG
AAGTAGGCTCCAACCTCCTTCACTGGTCTACCATGTTGGTCACGACTTTC
GAATTCGAAACGCGAAATTCAGTCTATCAGCCTGCAGTCTGCGAAAAGCC
CACCTCCTGGATCAAATCAAATATTCCTTTTTGCTGTCAAAAGGTACTAA
TTTTAAAACATTATTCCCCCATCCTTTTGCTCTGATTTGAATAATTATGT
AGTCCAGCCATAAAAACAATGATAGAGCCATGCATAATTACTGTATCATG
CATATTGTTAATTATGCATGGTTTTATCATTGTTTTTCTGCTGGACTACA
TAATTATTCATCAGGTCGGCCTCCTTTGAAAAAAGGTTTATTTATGTAGA
TGGGTCGTCAATGGGCCATTCCAGAAAAGTTTTGTTACCCCTCTGTCTAC
CCCTATGACGTGCTTTTTTTAATTATTTCTAGCCTCGGAAATAATTCTTT
TCTAGTGGTGGTTGGAAATTCCGATGAAAATCCATGTACTTTTTGCAAAA
TGCATCAGAAATGCCTCTCTTTTTTGCCTTTTTTAATTCAATTGTCTTGA
AAATTCATACATTTTCTTCTCTCCCCTTGGAAATTTCTAATTTTGGTGAA
AACTTTCCGTCCCCCTGGTTACAGCCAAATTCTGGAATGGACCAATGTGG
TCCTTGGATTTTACAATACAGCTCCTAGAGATAATTCAATGACACGTTCC
CTTCCCCCTCAAACCTATTGCCAGACGATCTCAATCAAACGAAATCGACG
ATCAAACCAGTCGAACCAAATTGAACGCAATCGACTGATTGTAATTCGAT
TGTCGAACGCAATCGAACGTCAAAATTCTGGGTAATATTCGATTGGATTG
ATTGTTGTTCGACTGGTTCGATCGTCGATTCCGTTCGATTGAGATCGTCT
GGCTTTATTCTTGTAGCTTTCCAACATCCAAGCTCTCAAACATCACAAGC
CGAATGAAATTACTTTCGATTTTCCATAGAAATTATGCGATGAACAATCC
GGGGGTCAATGAATCGACGATCGAACCAACATGGTTTCATCCATGATTTT
GAGTCCCCCCTTAAAACACAAATCACCCCTTATCAATTTATCCCCCCTTA
ATTAAGGCTTAAAGATGGTTTTGAGGTGCCCCTTAAATTTACTCCCCCCT
TAAATTTGCAAGATTCTTATGTATACATGCCCTTAATTTTTGGGGTGTAG
AGAAAATTGAGAAATTAGTCCTTATGCTCTTGAGGAAGCTCTTCTACTGA
TATTTCTTTCTTTCGTGAAAAAGTTTGTTATCATTATATACTAACCAGCA
AATTTAAAATATTAGTAGAGAATGATAAACTGGGATAAACTGCAATAAAC
AATATACCTGCCGCTGGTATAAAAATCCCTACAATACACTTTCTAAAATC
GTTCTCTCCTCGAAATGATAGCATTTGAACGAAATTATTCCATAAAGAAG
CAGAACAGACAAAATATTCCAAATTGAATGTCTTTAAAAAATGTAAACTT
TCGAATCACGGGACATTCCATCTGAAATGTGATTGGAGCCTTAGATGTAG
TGTAGGATGATGACACACCAAGGAAACAAAAATATTTTCGAATGTAACAT
TCGAATCGAAATGGAAAATTCCATAGCTGAATGTGATTGGAGCCTTAGGT
GCTTTGCAGCAGTGGCATTGTGGGAAAATCTTTCTGGAGGGGCCAAAGTC
AATTTTCCAAACTTTTACTAATTCATTTGCCTAGGTATAATGAGGAAGGA
AATATTTAGTGGAGAAGAGTAGATTTATCTTTGATGAATGGAAAAGGGAA
CAACAGGCCCCACCATGGTTGGGGTCGACTAGAAAATTTTTTTAAATCGA
CTGCCAAGCTACCCTAAATCACTAAATACAAATAGACAAATTAGAGACTT
GCTAGAGTGAAAAGAAACTTAAAGAAACAATGTGTAATGCGAGCGAAGCG
TGCGAAAAAATTGATGTTTTAAGATTTCAATATTGTTGACAGCATATTGG
TCTTGGGGCGCAGTTAGATTTTCATTTAATAATGCTATATTGTACACAAA
AACTTGTAAATTAGCTAGACTGCGAAGAAGTTACCAAATAACTGTATTGC
GAGCGAAGCGAGCGAAAAAAAATTGCAAGTATTTTAAAATTATCTTAGTA
AAATTGGTCCTGGGTGCAATTTAAGGCGCATAAAGTATGATTTTTAAGAT
TGGGGCGTTTAAAAAATCTCTTTTGGCGCCCCTTGCTCTTCGGCGCCCCT
TCAAAAAAGCTCCACTGGGGGGCCATGGCCCCCCGGCCCCCCTGCCACAA
CGCCACTGTTTGCAAGATCGGGACACAGCAGGAACAAAATTATTTTAGAA
TGAGTTAAAAATAAAAAAAAATTTATTATAAATGACGATGTGAAAAAGAC
GAAGAAATATCAGCTGTTGGAACAGAAAAGAAACAAGATTACTCCCCCCT
CAAGTAGCAAGGGCTTTCATTTGACCCTTGAGACCAAGTCCCCCCTTATT
TCTCAGTTTTTAACATTTTTCCCCCTTGTGTTTTTCTCTAAATTTTAAAT
CACAATCAACATCAATCGAACGCAATCGAATATCAATCGAATCTGAAAAT
TGTGGTAATATTCGATTGAGATTCGATTGCGTTCGACAATCGAATTTCAA
TCGGTCGATTGCATTCGATTTGGTTCGACTGGTTAGATCGTCAATTCCGT
TCGATTGAGATTGTCTGGCTATTGGAAAGGGTTGGATATTATCTTCATTT
TATTCTGAAATTGCATTCTTCTGTAAAACAATATGTAACCTGGGATTGAA
GTAAAGATGGTGGGTGAAGTGAAGGATGGAATTGAATAGTATTCTGACAG
TTTTGTGACTTCCCGACGCAAAATATGGAAAATTAAGAAAGATTATCAGT
CAGTCAGACAACTTGAACATACTTTATGTTATTTCTGGTTATTTTTGTCT
TACTTACAATAGGAAGGTTTAACTTATGCATGTGTCAGTGACAAAAACTG
GATTTAAAGCTAGCTGTGTTAAAGGGTTGCAAAGCAATCCAGACTCCACC
TTCATTTCAAGTCGCTATCAAAATAAGAGATACGCTCTTGTTCTTGAATG
AAATACAGTAAATTGGTCTAATATCAACATCCATTTAGTCACACTAGAAA
GTTTTTAAGTAAAGGTTGGCTCAGTTCAAATTTTTGGATTGTTATAGGTA
AGTATGATACAGTATAATAAAGGTTCAGAGAGGAAAATATCTTTTTTTCA
ATCAGTGATTCTGACCTTACTTTTAATCCTATCTCTAAGAAAGGTGTTGA
AAATACATGTGGGTCATAAGAATATATATACCGGCAGTGGGTGCACCAAA
AAAAAGTATACGTAGTTTTGTTGAGATATTGTGAGTTTCAGGATTTAAAT
TTTTTGTTCATTCTTTTTATATGGTATAGAGCTACAGGATGCTCTAACTT
GAATTTTGAGCTATCACACATTTTAAATTTGACTTTTTTTCCCTGTCAAA
ATTTCAAAAAATCATTAAAGACAGCAATCACGCTATAAATAAGACATATG
ACAAAGGCACAATTTTATACTTTTTTATTCTTTTTTTGCTAACAGTTTCT
CCATCTTATTTGCATGTCATGAACATTTCCAACACAAGCAAACTCGATAC
AAACCCAAGTTCGTTGAGCAACTAGTCATGGAATGGTGATCTATTTTTTT
TAAAGTTTTCTCACATAGCACGTACTTAATTCCCACGTCTCAGATGCAAT
TAAAGTATAAGGCCCTAGGAATAAAAACACAAAAAAGGCAGACTAAGGAG
GCAAGATGAGAAGTTTTTGAAAGTGGTCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNGTGTTCAAGAGGAAGGAGCTTGAGCAGG
GTATGGACTTTCCTTCAAGATATAAGTTTGCCATCCATGAATTTCCATAT
ATTATTGTGAAAAGGAATCTCTAGGAAGAAATGTGTCTTAGAAATTGTAG
TCTGTAAATTTAAAAAAAAAGGAGTAGGAAGAGTTATAAACAAAGATATA
ACAAAAAAATTCGGGNGAGCAACAGAGGAAATAGAATAGAGACATAAGTG
TGCAGTAATGGAAACAGTATATTTCGAAACGTAAACAAGAATGCCGAAAA
TGTATAATTGAACTTGGGATGACATTGGGGATGCATCAAGATATATATAT
AACTGAGAGCCTAACCCGTTTTGACGACTNATGACGGCAACAAAATAGAA
AGAGAGAAAATATTCAAAAAGCATCAGCATTAAGAAAATCAGCTAGGAAA
CTAAATACAATCATGTGGAAAACTGAAGAACTAAATTTGAGTTTTAAGAG
AGCTTTTAAAAGATCTGAATTTAAGCTGTTGATTCGAGATCTGTACAATG
TGATTCAAGTCTCTCGCAGAGATGTGACATGAAGCGGAAATAAGACATCC
TAATTAAGATTTGGTTTGTAGTGAATGTACGCTGCAAACTAAACTTGGAG
ATTACGAACGGTTCAAAAGATATCATCTGTTAGCCATTAACTTATAATAT
TTTCATAAATGACTTGAACTTGGTCCTTTGATTATTCAAAAGTATCCATG
CTCGACAAATCTATTGAAATTCATTACTGTTCTTGTCTAGCCACTGACTC
TATCAAGTTGAAACAACAATCATTGTTGAGCTACTCAGGAANACTACTGA
CATGCAACGGTTACGGAGTAACCCTACACCCCAACGTCACCCAAATCCAA
AGAATAACATTAAAAGGAGGGTAAAGAAATTAATTTGAGGAAATTCTAGA
CACGTAATGACATTAGGTAGGTTGCAAATAGTGATGTAAAAATTTTACCT
TGGCCTAGTTAGCATTAAACTTAGAAATATCTTGGTCAGAGATTTGAGAT
ACCTAAGATAGCAATCCCTAGACCGTCTANTTCCATTTAAGATACTGGAT
GACTAAGTCATTTTGTGAAGCCCTTTTCTCCGTCAACTCCTATAGCGAAA
ATAATTTGACTTATCAAGTATTTCCAAAAAAAAAAAAAAACCTGTTTAGC
ATTTGGTCACAAAACATTTGGCTGCAAATTGGAGCAGTGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCATTGCT
GGTACTACCCTTGCTTAAAAAGGTCAAATGTTGTTACCTCAAATGTAGGA
TATTAGTTAAACGTTAAGAATAATAAATTCAGGCCATTGAAAACTTTTTA
AATAAAAACCGACCAGTCCCCAGAACAATGGAAGAAATGATAGTTAGAGA
ACAGCCTCCTTTTTGACTTGCTGTCGTTTAAATCGATAATAAAACAAGGA
GAGTTGCAGAAAATGTTTGGGTGATTTTGGAACTGCAAAAAGTTTATGAC
AACATCTCAAAAATCAAAACACATGCAAAATGACACNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTAAAACACATGCAAAATGACACATCAATC
CAGTCAAAAATCCACTATAACAAGCATTTAATTTGATCTTATTAAAGCAA
AAGACGAAAAGGCTATAAAGACGATAGCAAAAACTGGATCACTACCCTTA
TTCTTAAAGTCACAAGTAACAACACCAATTTGTCATTTCAACTTGAGAAA
GCAGATACAAATATTCAATCGTACCAGGCTTGTATACCACGTACGTGTCA
AAATCAAAACAATCATTAAATCTGACATCTTTCTCAAAGAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCGTTTCATAGCTCATTGACCGGTTAATTTATAACAATTATG
AATAAAAAATACATAACCATAACACTGGATAACAGGCCCCTATCCCCAAC
TCTCAAAAGGCTACTAAATGAAGCAGGACAACGACCGACAATCACAACTC
CAGAAACGATGACAAGTGTCACTCCAGCCACAAATCACTCAGAATGCAGG
AAAATCTTTTAAGCCTTGAACAAAATTCTAGTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNACCAGCCTTTTAAGACTATCTAAATCCAGACGAAAAGAGAAAACA
ATACAAAGATTCATACCGAAAATTAAAGGAGGGGTGGCAGTGAGAGTTGA
TGGACGTTTTACTCGTAGCGAGGCTACCATTATTGTTGTTGATCGCTCCT
GTGAGGGCGTTTGGGGCGGTAGCGGGTGAAGAGGTTGTAGTTCGTTCGTT
ATTTGGATGGACGAAGCCAGCTCGCTGGATGCTTTCGAATACTGTTACCA
GGATATTGGTTTCATCGCCTACTAAAGAAACTGGCACTGTTTATAGAATT
GTAAAGTTTGGGCAAGCCGTTGGATTCAACGCTGATTGTTGACACGTGTA
GCAGATATAGCGGCAAAATGGCTGAAATGGTGGTCGTTGTTCGTCGTGTT
ATTCGTTATTCAGATAATGAAAGATTGAAGTTGTGATCAATTGAGACTGA
GCTGAACTGCGCTGAAAGGGGCTTGACGGTAGGATATATATAGGCGAAGG
AAAGAATAACCGGCAGCCGAAATATACTATTTCATAGTCGCCTCGGTGCG
GTGGCGGGATGTACTTCATTCGACTTGGAATTAACCTGAGCTAAGGTTTA
GCTCCAAACATAACATCAAAACCTCTCTTGCTTGGAGTTTCCAAAGCTTT
TTTTTTCAACTTTTTCAAAAATATTACCCCACATGGGAATAGCTTGTTTT
ACCTATGTGTCATCACAAGCAATTTGAAGTACAAATGAAATGGAGCGTTC
TTGAGACGATTCTGAACGTTTCATGGCGTTCCTAGTATCCAGAACTTTCT
CCAACATTCAGAATGTTTAGGAATGTTGCATTTTGCGTTTGTTTGCTTCC
AAAGGATAATGTTTAACTCAATAGAAATATGTTCCAGATCATTTACGACA
TTCATTATATTTTCCCGAACGTTCTAAGACATCCTTAAACTAGTATATAA
AGGGAATGATCAGGAACATTCAGGAATGCTCAAGAACATTCTATAGCATT
CTTATATCGTTCCTAAACCCTCCATATTGTTCGTTTTATTGAATGTCCCA
TTTTATTTGTATTTAAAGTTGCTTGTGGTGACACATTGAAATTACATAAC
ATTTTTCTTGAACTCATTTGCATTTTTTGGTATTTTAATGTGTAAGTTTG
CTTGCTTTTTTTGATGTTTTTTTGAAATTTCGACATTAAAAAAAGTCAGA
TTTTTTTGGAATAATTTTCGAACTACTATTTGAAACCTAATGTATGATAG
CTCAAAATTCAATTTGGAGCATTCTCTATACGATCAAAAAAGAATGAACA
AAAAAATTCAAATCCTGAAGCTCGTAATATCTCGACAAACCTGTATACTT
TTTTGGTGCACCCGGTACATTGTTATAAAAAGTTCTGTTTTTTTGTGAAG
AGAATAACCAGAAGCGCCATCTTTTTATTCAAAAACTATATATTTGAGCT
TTACTACAAGAGGTCATCGTCAGAGTGTAAAAATCTATCAATAAGAAAAA
AATTAAAAACATTCTAAAAACAAAATTTATAATTTGCTAATATCGTAGTT
GAAGTAATGAAAATTATTGTTTCAATACTGGCAGATTCATGTTTTTACAA
ACAATCCTCAGTTGATAATAAATTTTTTTAAACAAGAGTTCCGTTGCTCT
TACAAAAAAATAACATTGTAGGGTCTTCGTCAAAAATTGACGTCATTTTA
GTCCTTGGTGACAGCATTTTGAAATCAGTTCATTCCTAGAATTCAAAAGT
TTGTTAGGGTTCGGAAATGTAGCGATTTCAAGTTTCTCCGCGAGACAAAG
TGAGCATTTCAGTGACGAACGGTTGAACGGTGGGCACTGTCGGATAGTTT
TCCATGCGATTTTTGGCGATAGGTTTTTTTCGTTTTAACCTCCAAACTTC
TTTTGACAATCCCGTCTCTTTTTCGTAGCGGTGGTTTGCGAAAGAAGACT
TGTGGTTTGCGAAACGCTTTTTGAAAGCAGGTTCGGCAAGTCCGATATAA
AACTTCTCGTCATAATCTGGTCCTTCCTCGCATGTCACCGTGGCTTGGTA
TACTGATCGCTCAACCAAACACAATCCGTTCAGGGGATAGTTGGCTTTTA
CCCTGCAGTTACACATTCGGTTGTCTATGTTCTCGTTTGCTTCGTCTTTC
GGATCGTGTTTAGTTGAGCGATCAGTATACCAAGCCACGGTAACATGCAG
AAGTTTTATATCGGACTTGCCGAACCTGCTTTCAAAAAAAGTTCACGACA
CCAAGGACTAAAATGACGGCACTTTTTGACGAAGACCCTAAAATGTTTTG
TTTTTTTTGTAAGAGCAACAGAAATCTTGTTTTAAAAAAAAATTATTTTC
AACTGAGGATTGTTTGTAAAAACATGAAACTGCTAGGATTAAAACAATAA
TTTTCATTACTTCAACTATGATATAACGCTTCTAACTTCGGTAAATTCTG
TTTTCATATGTTTTTTACCCCTCTTAACCTTCATTTATTGTCAAAAACAC
TCAAAAAATGTCCCACAAATTACAAGATGGGCGAAAATTAAAGGGTGCGC
AAATATCCCATTTTGAGAGTTGCTAAAAAAAATTAAGGGCACAAAAATAA
AAGGCTCAAGCTAAAAGGTACATGAAGGTGCTCTCTCAAATTGATGTTTG
ATTGCACTTTTTTTTTAATTTTCATTTTTAAGAAATGCTCTGGGAGAGTT
CAGACTGCAACTGTCTATGGAAATTTTAAAATTCATTGCTGTAGAGGGTG
TGGTGTCTTATCATTGTCTTTTTGTGATGCTGGCCGCTTTTAGTTTGTTT
TTGCTTGCCGGTATTATCTATGACAGCAAAAAAATTTTATTTTTAAGAGA
TTAATTTACTATCATGAATAAATAGACTTAGCACTTTCGTCAAGACAAAG
AAGAAAGGTAAGATAATTGATTTTTTATTCTATATTGTTTTGGTTAGGAT
GATAGAAGGCTGTAAACACATGGTATATGAAATGAAAAACAGAGTTGGTA
AAACAGAAGAGGGTTAAACAGGTGGGTCAAAGAGAAACAGGAGCATGTGT
TTAGTCAGAGAGGAGAAACAATTATAGAAGAGGTCAAACTGATGCAGGGG
TGTCTATTTTTACGAGGAAAATACAATTTGAGCCTTTAAAGGTCTATTGA
GGGCAGGGAGTCTTTTCGTTAAAACGGAAGAGTAAAAACAGAAGGTGGAA
GGAAATATCACCTAAAATTCTGCAAAGGAAAAAAGGAAGTCAAGTCCAAC
TGGCAAAGAAGCGACGTCACAAGAGAATCAACAAAAAGTGGCGTCACAAG
AAATTTCAGGAACGAACGAAAAGCAACCTCCTGATCCACCAACACCACCA
ACGCCACCCGACCCTCCAAATAATCAGCCTCAGGCTGAGAAAGATGAGAA
AATTGCAGAAGCAACCGAAGCTTTTCAAGGTACCAATATCAAATAACAAC
ACAAGGATCGAAGCACCTCGGTGCAGTAATTGGCAGCCAAGAGTTTAAAG
ATTCGTTCACAGCCCTGTGAATTCAGACAATATCGTATCGGCACATAAGT
GCCGACCTAGAGGTCATTTTGGGTCGGCAAAGCCGTCCTAAGTAGCTTGT
TTAGGTCGGCAAAGACAATAATTAACGAACTAACAAATTCAGCTGCTCTA
TTATTATGTTAATAACTTTTATGTTTTATAAAGAGAATGGAATGAGGCTC
GACTATCATGTGTTATCGAATGATAACACAATTAGATTAACCTACGACCC
AAAACATTTCTTTTGTCGGCACGCCGACCTAGAGTGTAAATTACGTCGGC
AAATAAAAGCCGACTTCAGCTCAAGTTACATCAGCTTTCACGTCGGCATT
GCCGAATGCCAACCTGGATTCACAGGGCTGGTTCATCGCGGAAAAAGTTC
TGACCTGGCTAAACGAGATCACGCTTTTGTACAAAATTGCCGTCAGTCAA
CCTCAGTCTGCTTACGCCTGTTTCGTTGGAGGTTACCAGCACAAACTCCC
ATACTTCCTGAGGACAGTCCCTGACATTGAGAAGTATCTGAAACCAGTTG
ATGATGTGATACGACACCATTTGATTCCTGCTCGAACTGATGGTCGACTT
GTCAGTGACAATGAACGCCAGCTTCTCTCACTTCCACCACGACTTGGTGG
CTTAGGATTGAAGATGTTTGTGGAAACAGCATCAGAAGAGTTCAATAATT
CCCATCGAATAACGAATAACAACCAAAATCAAATTCTTGGTAAAGAGAAG
ATTAAAAATCCAGCAACCAAATATCAAATCTCAAAAGAAAGGTCAGATCG
TCAAAAAGAAAAACTCGACTTTCTCATTCAATCAATGGCACCAGAAAAAA
AAGAAGAGTACCCTTGCAAACGGTCAAAAAGTCGTATCCAACTGGCTGAT
GACCTTGCCATTGAAAGAACATGGATTGGACCTCTCTAGAAACGAGTTTA
CCGATGCTATACGATTGCGCTACGGTTGGAAACTCGATAAGATGCCATCA
AAATGTGCATGTGGTGTAACCTTCGACGTCGCGCATGCTCTGTCATGTAA
GGAGGCTTTGTCACTCTGAGGCATAACGAGCTGTGTGATATCACTGCTGA
GATGTTAGAAGACGTATGCAAAGATGTTAAAGTCAAACCAATGCTATCGG
AAATCCAGGAAGGCGAAGAAACAAGAGGAAACCAATTGAAAGAAGCAAGA
CTTGATGTAAGCACTGCTAGCTTTTGGACAAGGGGTCAACGGGCATTTTT
TGACATAAGGGTCTTTGACCTACAAGCCCAGAGATACCGAAGCCAAGAGC
TTGCAAAGTGCTACGAAACAAACAAGAAAGAAGAAAAGACAATACAACAA
AAGAGTACTTCAAGTTGAAAATGGAACATTCACTCCCCTAGTCTTCTCCA
CGAATGGAGCAATGGGAAAAGAATGCATGGTATTCTACAAATGTCTAGCG
GGATTAATCGCAGACAAACGGGACTGTAATGTTAATGAGATTACACATGC
AATTCGCACAAAACTTTGTCTATATAGGAAATATTTGTTAAAAAAAAAAG
GTGGTAAATCTCAGGGGGAAAAACTTTTGGAAGTTGTTCGTCAATGAAGC
TTCCAAAGAGTTTGTTTGATTTCTTTTGTTGCCAGAAAACGCATTGGCCG
GTCTTTTTACCAGACTTAAGCCCAATCAGCAGCGGCCTTGAAAATGAAAA
ACAGAGGCCGCTTAGAAAGCCGCTTTAAAGTGAAACGAGAGTGGCCAATC
CATAGCCGATAGAAAAAAAGGTGGGACCGGTAAAAGTGAAATCTTGGCCG
CTAAAAAGCCACTATTCTACCGCTTTTTTTGCCGATCAGTCTGGATCGGT
CTTTTCATGTACTTAAAATCGCTTGGGAAGTCACAATTAGTTGGAATAGT
TTGTTAGTTCAGTCAGACCCTGCATAATTTACACACCCTTTTTAAAGGGG
AACTAAACATTTTTTTGAAAATACCTAAATCATATCGCATACTTCCAAGG
AATGACCTCTAAAAATATTTTTCTCTAAAAACTTCTCTATCAAAAGATAT
AGCTCTTTATGTTTACAGAAAATCTAATCTTTTTAAAGCAATGCGTATTT
TGTTAGGGGAATAGGTCGAGCCATCTGTTTGACGTAAACACGTTCAGAAA
GTAATTGGAAAAGCTCTTACTTTTAGTTGATAAAGAACCTTTAACTTTTT
GTGTAGCCATAACTTTTTATTCACAAATGGTTTAACCAAGAGACAGAATT
CATTAAAAAGTCATTTTTGAGTGGAGTAAAACTATGTTTGAACTTTCGAA
AACAAGTGAGTGAAAATGATTTTAGAGTCGATTGAACTTTTTATTGGAAT
AAGCTGAAAACCCCAAATTTAGTCCACGTAAAACAGAATCCTTCCTGAAA
TCAAAAATGATTTTACTATCTTCCTATTATTTCTTGTTCACGAAATATCA
AGCTTTAAAGTTGATGAACATACACAAAATTCATAGAAAATATGAACGAT
ATGACGTCACAAACATGTGTAAAGTGGGGGTTTATTTTAAACAAATTATA
CGTTTTTTAAAGAAGGTTTTATACAAAATAGGAAAGACATTGAGAGTGGA
AATTATATTTTTTCGAAGTTATACTGTGTTGTGTAGTTCTTGGAGACAAA
AAAAGCATGACCTCAAAAAATGTTTAGTTCCCCTTTAAAAGAGGGATGCT
AACTTTTCTTTCTCCTTGCTTTCTCCTTGCTTTATTTTTCTAGAATTTTA
AAAATATTTTGAGTCCTTGGTCTGACCTGGGCCGAACCTAAAAAAATTTT
TGTTTCCGGTCCACCAGGTGACAAAATAAAAAGTCATGCGGGCGGCCAGG
AAAAATTTTTTGTTGGTCCTTTTTATGATTTCTAATAAAAAAATTAGGAA
GAAAAAAATCATCTCTCTGGCTGTTGGTATTGCCCCACATTCTGTCTTTA
TATTTTTTCTCTCTTTCACTGAAAGAAATGTGTTGCTATTAATTACAAAA
AGCTGGACTTTTTGTACTGTGCTTGTTTTTTCTTAGAATCAACTAACTTT
TCATTCTAATAAATTGATTTAATATGCATAACACTATTTATTTGATCTTT
AACGTCCAGAAAGCATGCTAAATAACCAAACTTTTTGAAGAGTGTTACAT
AGGAACGATGTAACAGTATGAATGATTCATGAGTAAAGGTTTCCTTTTTG
GTTCTTATTAGAAAAAAATGCAGCCGGTGAACCGGAAACGAAAAAATTTT
TAGGGTCAGCCCTGGTTAGGGTTTGAACTTGCAATCGTGTATTAGCCAAA
TACTCTACTACCTTCATGCTAGGGTTGTCTTTACAAAGTGTGAACCCTCC
CCTTCCTTAAGGGAAATCCATCTCTTCTGATTGTAATTGAGGGTTTAGAC
TTCAATGGGGGGTCCAATAAAGATAAGGAAGGGTTTAACAATATTTTGGT
GCTTCAGAATAAATGGCTTTACTTATTAATCATATATTATCCTACTTGTT
GTTGTATGTATAGTGAATGTTCCTACTGAATGTCTTCTCTAATTGTTTTA
GAACAGAATTTGAACCATGTCTGCCAAATGTGTATTGGAAGGAGAAGTAG
TCAAAGGTACAATCACCTTCAAAGATCTTGGTAATGGTCAAACACATGTC
ACAGGTGAAGTAACAGGATTGGCCCCAGGTTTACATGGATTTCATGTTCA
TCAATTTGGTGATTACTCTGGCGGATGTGGAACCACTGGTGGTCATTTCA
ACCCTTCTGGTAAAGAACACGGAGGACCAGATCAGGAGAACCGACATGCT
GGTGATCTTGGTAACATTACAGCTGACTCAAACGGTGTTGCTAAAGTTGA
TATCAAAGACAGCCAAATTCCATTGAGTGGGGTAAACAGTATTGTTGGCA
GAGCCGTTGTGGTGCACAAAGATGTTGATGATCTTGGAGCTGGTGGTTTT
GAAGACAGTAAAACAACAGGTCATGCTGGTGCTCGATTAGCTTGTGGTGT
TGTTGGCCTATCAAAATGACTACAACAATCTCAGCTTTGAAGAAAGTTAT
GTTTTTGTATTATATTATTTCAGATCACATTTGTGCAATCGACTCTAATG
CTTTAGCAGCAGGAGCTCATACATATATAAGTTTTATTTTATATTTAATA
ATGAAGTCCTTCCAGGCAAATTTTGTATTACTTTTTTAACAATAAGATTC
TTAGATTCAAAATAACTATTAGCTGTGGGTAGAAATGTTGTTAATTTGTA
GCTAGGGCTCAGTGATTGGTAAATATATAACTTACTTTTTAGACTAAAAC
TTTATTCCTAGTCATCATCAACGGTTAAAATTGAAGGGACAATCTGATAA
CTCATGAAATTGAAAAGAATCATGAAAAATCTACCTCTTGAGTTTAATTG
TTAAAAAGGAAGATTTTTTGAATATTTTGGTTTTGACAAAACAAGATCTC
CAAAAAAACGTTGCTTTTTTTTATTAGTTTTTGGAAATTTGGTACTGAAA
TTAATTAGTTAAATTGTTGATCATACTGGCAAATAAGACATTGCACTTGA
CTTTGTAATATTGATCTTCCATTATATTCATCACATTGATTTTTTTATTT
TCAGTGAAACCTAAACAAAAAAAACGAAAAATTGAAAATTACAACAACTA
TACAACCTACTAACCGAAGAAATGTTATACACCATACCTTCTAGGAGAAG
TACCTAGTAATGCTAAGGCGAGGCAGTATGCCCTCAGCGTTGCATAGCCA
AAGGTGAGATAAATTTGCTACCTTTGGTAGAAATGATGATAGAATTTTGA
AGGGCCTGAGGCACATTTTAGTATTCCCAATTGAAGTACTACGCTTCTTA
CTAAAACTACCATTAAGCTCCTTGGACCAAAGGTTTTTTAACATTCGNGG
AGAACCGACATGCTGGTGATCTTGGTAACATTACAGCTGACTCAAACGGT
GTTGCTAAAGTTGATATCAAAGACAGCCAAATTCCATTGACTGGGGTAAA
CAGTATTGTTGGCAGAGCCGTTGTGGTGCACAAAGATGTTGATGATCTTG
GAGCTGGTGGTTTTGAAGACAGCAAAACAACAGGTCATGCTGGTGCTCGA
TTAGCTTGTGGTGTTGTTGGCCTTTCAAAATGACTACAACAATCTCAGCT
TTGTAGAAAATTATGTTTTTGTATTATATTATTTCAGATCACATTTGTGC
AATCGACTCTAATGCTTTAGCAGCAGGAGCTCATATATAAGTTTTATTTT
ATATTTAATAATGAAGTCCTTCCAGGCAAATTTTGTATTACTTTTTTAAC
AATAAGATTCTTAGATTCAAAATAACTATTAGCTGTGGGTAGAAATGTTG
TTAATTTGTAGCTAGGGCTCAGTGATTGGTAAA Coding sequence (CDS) from alignment at scaffold_327:380771..396553- >TCONS_00059445 ID=TCONS_00059445|Name=TCONS_00059445|organism=Clytia hemisphaerica|type=CDS|length=906bp|location=Sequence derived from alignment at scaffold_327:380771..396553- (Clytia hemisphaerica)
ATTACAGCTGACTCAAACGGTGTTGCTAAAGTTGATATCAAAGACAGCCA
AATTCCATTGACTGGGGTAAACAGTATTGTTGGCAGAGCCGTTGTGGTGC
ACAAAGATGTTGATGATCTTGGAGCTGGTGGTTTTGAAGACAGCAAAACA
ACAGGTCATGCTGGTGCTCGATTAGCTTGTGGTGTTGTTGGCCTTTCAAA
ATGAATGTCTGCCAAATGTGTATTGGAAGGAGAAGTAGTCAAAGGTACAA
TCACCTTCAAAGATCTTGGTAATGGTCAAACACATGTCACAGGTGAAGTA
ACAGGATTGGCCCCAGGTTTACATGGATTTCATGTTCATCAATTTGGTGA
TTACTCTGGCGGATGTGGAACCACTGGTGGTCATTTCAACCCTTCTGGTA
AAGAACACGGAGGACCAGATCAGGAGAACCGACATGCTGGTGATCTTGGT
AACATTACAGCTGACTCAAACGGTGTTGCTAAAGTTGATATCAAAGACAG
CCAAATTCCATTGACTGGGGTAAACAGTATTGTTGGCAGAGCCGTTGTGG
TGCACAAAGATGTTGATGATCTTGGAGCTGGTGGTTTTGAAGACAGCAAA
ACAACAGGTCATGCTGGTGCTCGATTAGCTTGTGGTGTTGTTGGCCTTTC
AAAATGAATGTCTGCCAAATGTGTATTGGAAGGAGAAGTAGTCAAAGGTA
CAATCACCTTCAAAGATCTTGGTAATGGTCAAACACATGTCACAGGTGAA
GTAACAGGATTGGCCCCAGGTTTACATGGATTTCATGTTCATCAATTTGG
TGATTACTCTGGCGGATGTGGAACCACTGGTGGTCATTTCAACCCTTCTG
GTAAAGAACACGGAGGACCAGATCAGGAGAACCGACATGCTGGTGATCTT
GGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059445-exon-scaffold_327-1575043694:396311..396553 | TCONS_00059445-exon-scaffold_327-1575043694:396311..396553 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1575043694:382339..382602 | TCONS_00059445-exon-scaffold_327-1575043694:382339..382602 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1575043694:380771..381224 | TCONS_00059445-exon-scaffold_327-1575043694:380771..381224 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1510915933:396311..396553 | TCONS_00059445-exon-scaffold_327-1510915933:396311..396553 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1510915933:382339..382602 | TCONS_00059445-exon-scaffold_327-1510915933:382339..382602 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1510915933:380771..381224 | TCONS_00059445-exon-scaffold_327-1510915933:380771..381224 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1491911889:396311..396553 | TCONS_00059445-exon-scaffold_327-1491911889:396311..396553 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1491911889:382339..382602 | TCONS_00059445-exon-scaffold_327-1491911889:382339..382602 | Clytia hemisphaerica | exon |
| TCONS_00059445-exon-scaffold_327-1491911889:380771..381224 | TCONS_00059445-exon-scaffold_327-1491911889:380771..381224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_327 | supercontig | scaffold_327:380771..396553 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0004784 | superoxide dismutase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006801 | superoxide metabolic process |
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| biological_process |
GO:0006801 |
superoxide metabolic process |
| molecular_function |
GO:0046872 |
metal ion binding |
| molecular_function |
GO:0004784 |
superoxide dismutase activity |
Blast
BLAST of TCONS_00059445 vs. Swiss-Prot (Human)
Match: SODC (Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2) HSP 1 Score: 153.68 bits (387), Expect = 4.146e-45 Identity = 83/150 (55.33%), Postives = 108/150 (72.00%), Query Frame = 1
Query: 265 AKCVLEGE-VVKGTITFKDL-GNGQTHVTGEVTGLAPGLHGFHVHQFGDYSXXXXXXXXHFNPSGKEHGGPDQENRHAGDLGNITADSNGVAKVDIKDSQIPLTGVNSIVGRAVVVHKDVDDLGAGGFEDSKTTGHAGARLACGVVGLSK 708
A CVL+G+ V+G I F+ NG V G + GL GLHGFHVH+FGD + GC + G HFNP ++HGGP E RH GDLGN+TAD +GVA V I+DS I L+G + I+GR +VVH+ DDLG GG E+S TG+AG+RLACGV+G+++
Sbjct: 5 AVCVLKGDGPVQGIINFEQKESNGPVKVWGSIKGLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKGGNEESTKTGNAGSRLACGVIGIAQ 154
The following BLAST results are available for this feature:
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