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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059421 ID=TCONS_00059421|Name=TCONS_00059421|organism=Clytia hemisphaerica|type=transcript|length=5099bpRun BLAST on NCBI protein sequence of TCONS_00059421-protein >TCONS_00059421-protein ID=TCONS_00059421-protein|Name=TCONS_00059421-protein|organism=Clytia hemisphaerica|type=polypeptide|length=412bp MVKMAGVEISHPHISVQYDWQSILRNTNEKAWVVCSQEGSPNIYSDVICKRun BLAST on NCBI transcript from alignment at scaffold_327:416264..431747+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059421 ID=TCONS_00059421|Name=TCONS_00059421|organism=Clytia hemisphaerica|type=transcript|length=15484bp|location=Sequence derived from alignment at scaffold_327:416264..431747+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_327:416264..431747+ >TCONS_00059421 ID=TCONS_00059421|Name=TCONS_00059421|organism=Clytia hemisphaerica|type=CDS|length=14868bp|location=Sequence derived from alignment at scaffold_327:416264..431747+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059421 vs. Swiss-Prot (Human)
Match: PAAF1 (Proteasomal ATPase-associated factor 1 OS=Homo sapiens GN=PAAF1 PE=1 SV=2) HSP 1 Score: 280.796 bits (717), Expect = 7.249e-83 Identity = 150/399 (37.59%), Postives = 229/399 (57.39%), Query Frame = 3
Query: 183 ISVQYDWQSILRNTNEKAWVVCSQEGSPNIYSDVICKKHTQDVKVKTLDVSTNGVHAEILNGNNLKLN--YKTTTSHMISPKASFKDIHLKAIRSMNISPGGSLGVSSSEDGALYVWQTEDGKLRRTLDGHVSEVTHCRFFPSGMVVLSGGVDMRLKIWSVEDGSCPVTLVGHKAAITATAIIDRGRNVISCGRDGVVHLWDCGTASSLCKIEDETKNV----INACDLSSHQWQSDTMVGRSEKECGTEGKLLLLAKENGTLKALDVHSRDKVFELKFASALNSCCFINEHRVVTGQQNGSLSVVDIRNPRKAEYVLKHGKSPINCVKTYYKDRVLVGRSDGACSCISLDNPNQDSYKEQNL-ITQELIGSNHDPIYDIAFSNDHVYTACRDGVVRKY 1358
+ +Q DW LR +AW+ C G P++Y + C+ D + ++ G +N ++ ++ + +S ++P +F IH K+I ++IS G LGVSSS DG + +WQ +G+LRR L+GHV +V CRFFPSG+VVLSGG+D +LKIWS ED SC VT GHK I TAI+DRGRNV+S RDG LWDCG ++ L + D ++ + A D S + + M SE+E GTE K+LLLA+E+ L+ L + SR VF + A N C F++ ++ G Q+G++ +D+R+PR V+ +P+ + + +D + + DG+C + +Q+L EL G++ DP+Y +A +YT CRDG+VR+Y
Sbjct: 5 LRIQSDWAQALRKDEGEAWLSCHPPGKPSLYGSLTCQGIGLDGIPEV--TASEGFTVNEINKKSIHISCPKENASSKFLAPYTTFSRIHTKSITCLDISSRGGLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVDRGRNVVSASRDGTARLWDCGRSACLGVLADCGSSINGVAVGAADNSINLGSPEQM--PSEREVGTEAKMLLLAREDKKLQCLGLQSRQLVFLFIGSDAFNCCTFLSGFLLLAGTQDGNIYQLDVRSPRAPVQVIHRSGAPVLSLLS-VRDGFIASQGDGSCFIV-----------QQDLDYVTELTGADCDPVYKVATWEKQIYTCCRDGLVRRY 387 The following BLAST results are available for this feature:
BLAST of TCONS_00059421 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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