TCONS_00059490 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059490
Unique NameTCONS_00059490
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length539

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059490 ID=TCONS_00059490|Name=TCONS_00059490|organism=Clytia hemisphaerica|type=transcript|length=539bp
AacagaaaattttacaaaatcaaaaattcgcaaaatttcgCGGATCCAAC
TCAAAGCtttgcaaattttactttttgtaCAAAATCAACGGCTTAATTTG
TTTTTACTCATTCATTCATCATTCTATTTATCGCCATTTTACTTAGGAAG
TGCATCAATTTGAAATAGTTTGTGTTTTGATAGGTTATTTGACTATAATT
GCCAAAGTTAAAGCCCCGTAAACGAATCGCACCACTCTGAATTATNGGGG
GTTATTTGACAGTAATTGCCAAAGTTAAAGCCCCTTAAACGAATCGCACG
CACACATATTTAATTTGATATCAATACCACGTTATAATTATTGTAGATAA
GGTTTAATTATTATATGCCTGTAGAAAAAAAAAGCCATTGATTAATTCCT
AATATACCATGGCTGTTAAACCACGgtagattttcttttcaaattttgct
ttcaaagtttgatttttgttgtcgctctttttgtttatcaaagaaattta
ttaaaatgaATCTATTATcgattttttgaataaatttta
Run BLAST on NCBI

transcript from alignment at scaffold_328:33231..33769

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059490 ID=TCONS_00059490|Name=TCONS_00059490|organism=Clytia hemisphaerica|type=transcript|length=539bp|location=Sequence derived from alignment at scaffold_328:33231..33769 (Clytia hemisphaerica)
taaaatttattcaaaaaatcgATAATAGATtcattttaataaatttcttt
gataaacaaaaagagcgacaacaaaaatcaaactttgaaagcaaaatttg
aaaagaaaatctacCGTGGTTTAACAGCCATGGTATATTAGGAATTAATC
AATGGCTTTTTTTTTCTACAGGCATATAATAATTAAACCTTATCTACAAT
AATTATAACGTGGTATTGATATCAAATTAAATATGTGTGCGTGCGATTCG
TTTAAGGGGCTTTAACTTTGGCAATTACTGTCAAATAACCCCCNATAATT
CAGAGTGGTGCGATTCGTTTACGGGGCTTTAACTTTGGCAATTATAGTCA
AATAACCTATCAAAACACAAACTATTTCAAATTGATGCACTTCCTAAGTA
AAATGGCGATAAATAGAATGATGAATGAATGAGTAAAAACAAATTAAGCC
GTTGATTTTGtacaaaaagtaaaatttgcaaaGCTTTGAGTTGGATCCGc
gaaattttgcgaatttttgattttgtaaaattttctgtT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037452XLOC_037452Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059490-exon-scaffold_328-1491911889:33231..33769TCONS_00059490-exon-scaffold_328-1491911889:33231..33769Clytia hemisphaericaexon
TCONS_00059490-exon-scaffold_328-1510915933:33231..33769TCONS_00059490-exon-scaffold_328-1510915933:33231..33769Clytia hemisphaericaexon
TCONS_00059490-exon-scaffold_328-1575043694:33231..33769TCONS_00059490-exon-scaffold_328-1575043694:33231..33769Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_328supercontigscaffold_328:33231..33769 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.104838	0.121726	0	0	0	0	0	0	0	0	0	1.35851	0.519777	0	0	0	0	2.75127	5.75578	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059490 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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