TCONS_00059494 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059494
Unique NameTCONS_00059494
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1364

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059494 ID=TCONS_00059494|Name=TCONS_00059494|organism=Clytia hemisphaerica|type=transcript|length=1364bp
TAGTTCTATCACTGAAATGCTACAAATGTATACATGGAGTGAATTGCTAT
AACAATATGACCTTGGAGTGTTCCACGAAAGAGAACGCGTGTTTTACGCA
TTATGAAACAAGGGAAGTTTATTCGTCACCAGACTACCAAGATCATATTG
AGGTATATGTTCATCAAGACTGTGGTACTGAAAGCGAACAATTTTGCAGC
GACGCCGAGATGTGTGGACGTCGTGCAATCTCAGTTGGATTTGTCTCATG
TAAGGTCTCATGGTGCAAAAATGATCTCTGCAATACAATTGATAAAGACT
TATTCGCAACCAAGCGACAAATTTATTTCGGCTCAAGCTCAACAACAACT
AGATCTATACTATGGATTAATTTTTTGGCAATGCAAGTTTATCGCTTTGT
ATTTAGTGACGTGATAATGTGATGAAAATATGATCCATAGATTACTGACC
AGATGAATCTGTGGTTTGGAGGGTATGAAAGTTACCTCTCGCTTATGAAA
GTGAGTCGTCGGTATTCGGATTGGTTTTCTATTAAATTTGGTAATGATAT
GTGAACTATgacataaatattttaatttataatattcaatatattttctA
ATATTAAAGAGTATTCTAAGCTGCAAGCCACTAACCTTGACTGTCAGCCT
TAGAGCCTACATTATGCATAAAAACTTTTTAgttcaagaaaaaaaagctg
ggaaacattttccctacacttttgatttaaataatagcaaccctgtctca
cagccccggtggaacttgtTACCACCAGTGGGAAAATTCTATTCCTATGT
CAAATAGTCCAGTGTGATggttttggattgaaattcaaATGGAGGGATGT
AAACACAAAGTCAATTCTCCAATGGCGcggaaattgtagggtattatTTC
CGTGGTAGAGGGTACAACATGTTTAAGCTTGACTAAAATGTCCGTATTAC
accaaaaaaattcttaaacatTAAATTCAATACATGAATTACCGTTCATC
CTACACAAGTTACAACATTTTAAAGCTACCATTGTTTGTGGCATAAATTT
TCTCTCACAACTATAACACGGTAGCAGAAACGTAGAATGTGCTTGTACCA
ATCGTGAAAGCATCTGTTCCCGTGTAGCGTGCAGCTGACACACACGTGCA
GCACGATCAATTAAATTTAGTCCAACGAAATTTGATGACGACTTCTCATC
GAATCGGATCTCATGCTTAATTGATTGGCCACATAATAAACAACTTTCAG
CAGCGGAGAGAACGCTAGATGGATGTAACTTCTTCGTGATATCACATTGC
CGACAAACGTAAAGTGAAGCGTCGTGTATTGTAGTCCTCATCGTACACCG
AAATGTCTACAAGA
Run BLAST on NCBI

transcript from alignment at scaffold_329:22542..31130+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059494 ID=TCONS_00059494|Name=TCONS_00059494|organism=Clytia hemisphaerica|type=transcript|length=8589bp|location=Sequence derived from alignment at scaffold_329:22542..31130+ (Clytia hemisphaerica)
TAGTTCTATCACTGAAATGCTACAAATGTATACATGGAGTGAATTGCTAT
AACAATATGACCTTGGAGTGTTCCACGAAAGAGAACGCGTGTTTTACGCA
TTATGAAACAAGGGAAGTTTATTCGTCACCAGACTACCAAGATCATATTG
AGGTATATGTTCATCAAGACTGTGGTACTGAAAGCGAACAATTTTGCAGC
GACGCCGAGATGTGTGGACGTCGTGCAATCTCAGTTGGATTTGTCTCATG
TAAGGTAAGGTTGTTTCAGTGTATCACTATAAAATATGGTATATAAAATA
CACCCTGTATGGTCGGACGCCTATTTCTGCAGGGTATGACACTTTGATTT
TAGAAATCACACTGACCGCTTATTGGAATAcccacttctcacagacccgt
tgttttcaagtcaggaaattcagtggggatgggaaaaatagcatattatt
ttgcagtgaggattggcttGTTATTGGATTATTTTCGGTGGAGATaaaaa
ttttcccaccggggacgatatttcggccaatttttccagtgggaaggagt
CCCACTCGacagggtctgtgagaaaggggtgttttgNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGGCTTCAAAA
AAGTTTAATGTTATTAAAAGGAGCGTATATAGACGACCTTGTAAAAATAT
ACACTGTCAAGTCCTGTCAAAGCGAATTGCAAAAAATAGTGATTTTACAC
ATTTGATATCCATGTAGAAATGCAAGTTCTTCATAGAGAATATNTTTGAT
ATCCATGTAGAAATGCAAGTTCTTCATAGAGAATACAGAATATGCACgcc
ttttcttttaaaagaataacttccataagaatatcagggtgagatttcag
agttagaacaataggcctattgtttagaacaatagaaaaataagaataat
gctcaccctcagccaaaaattactattcttataaaaagaaaagcgtgtat
tctatactgactgaagactgcctgaaacggcacgaaactccgagtatcgg
aaaaaaaatttgtctttATTCTTGGCTGATATACCACTCTACCGATGGTA
TAGAACACTTTCTTGAATATATTCTATACATTCTTTGAACCCAAAAGTTC
CCCTATTACTCTCACTCATCACCTTCATAGATGAATTGTATGAAGAAGGC
GATGTTCTCGAAAACACTTGCTACCATACATGTCCGAATGAATGCGTCCG
AAAGTCGTACACCGTCCGAAAATCTACATACCGAATCGGAAGTCAATCTG
TATatgaagaaatgaagaaaacaatACCAAAGTTCAATAACAGAAGTATC
AACGagattgaaaaatatatcaggTCAGGTAGATAATAATCAtgtcggcg
atccaaaaaatatcagcaatctgattggttaaaaagagtataATATATCt
cgtattttacatgtacaaaatataaattgacgagaAGATGTTGTTGCATG
TAGAGATATAGTAGCAATCTAACGCCattttgctacaaaagtgccctgcg
cttttttataacacaaaaagtgcatttttgggtcaccgataaaNNNNNNN
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AAAATATGGTGGTATGGCATTatggtatggcgttatggcggtatacggaa
aaaatcggcgggagagttttgAAGAAacgactggcaaactctaccggctg
taaactattttcggcaaaaagcccgtttgcaaattttcttcggctttggg
cttatttcttagatagtgatttgtttTAGACTATATAGCATAGTCTAGGA
TAATACGAAAGTTGAAAGGAGCATAGACATTTTGCTTGTCTCGTGCGCAG
GAAGAACTGAAAACTCATGTCTCGTTTTGAAACGATTATCGAATttataa
aatatcataaaaaaatttaagtttcaCAAATTTTACTCAACAACACTTTC
GCGCTTTTctgaaatctttatttttaatgGAACTTTTACGAATGGCTAGG
GAAAATGAATTAAAGAATAATTTCAAATCTGATCCGGGTAATCTTCTTCC
CCTTGATGGAATAGTATGAGACGAAAATTGGTGAATATCCTGTTGGTGCT
ACTCAATGTATCGTCGAGAGGTAAGGCTGGCAATTTTCTGTGCTTATTTA
CGGCACACCTAGACACTTTGTTTTCAAAAGAATCTACATACTTTATATAT
ATCTAATaagaacacccctgtgtcacagaccattgagtttaaagcccgaa
gggctagaatagaatctctaacctttctcaggcaagaaaaagtgaagcct
taaaaaatgcactgtatttttgacgacagattNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaatctagca
attcctttgtttacgattgatatttttttcgaaatttagcggtaaatttt
agtttcaatctgtcatttgtgtaaaaaccaggcgatcCGCTCAAGGcagc
gcaactttggtaggatttgttggcttcaaatcctaccaaggagattcgat
tctagcccttcgggcttatactttattgtcacagacccgctgagacccca
gccccactgggaaatttagccaaaattttgtccccgatgggaaaataccc
tggaatttcagccccactggaaaaatgaCTTTTATTTCCTCCCCACTCAA
AATTGAATGTTTAAAAACTGCACTCAAAAATTATCCCCATTCGATTTTTC
AgccttagaacaatagaattgctatatccccattgggattgcAATAGGAA
aatttatccccactgagaaacTGAGAAAAAAGGTTCcacggggctgtgag
acaggggtgtataagaaTACACTgaagaaattggccaaaacattAAGAAT
ATACTAAGAATATTAGCATCATGGAGTTTAGCAGCTGAACCTATGAttgc
cattttaagagcatttttacctGCAAATTACCAATCACCCCTCGTTAAGG
ctcaaaaatttcacaaaaaatgtcatGAGGTATATATTTTATGTTAATTT
TAGATAGAATTTAGATCCTAGCCTAAGAATacctcaaaattatttttagg
gTGATTATCCGCCAAAAGGTTAAGAAGACCAAAATGTCATTACGAAGGTC
ATTATTCTATATACTATGGACCTTGAATTAGAGGTCTGATAGAAAACAAC
GATCTGGGGAGCTCATTTCATCATAGatcattttctatttctatttttca
taTATTTCATTTGATTTAGTTTTATCACTGAAATGCTACAAATGTATACA
TGCAGGAAATTGCCATAACAATATGACCGTGGAGTGTTCCACAAAAGAGA
ACGCGTGTTTTACGCATTACGAAACAAGGGAAGTTTATTCATCACGAGAT
TACCGAGATCATGTTGAATTATACGTACATCAAGACTGTGGTAATGAAAA
CGAACAATTTTGCAGTGACGCCGAGATGTGTGGACGCCGGGCAATCTCAG
TTGGATTTGTCTCATGTAAGGTAAGGTTGTTTCAGTGTCACTATAAAATA
TGGTATATAAAATACACCCTGTATCGTCGCACGCCTATTTCTACAGGGTA
TTTCTACTTTGATTTTAGAAATCACACTGAccacttctcacagacccgtt
gttttcaagtcaggaaattcagtggggatgggaaaaatagcatattattt
tgcagtgaggattggtttaatggattttttcggtggggacaaaaattgga
agataattttccaccgggggcgatattttggcaaatttttccagtgggaa
cgAGTCCCGCTcgaccgggtctgtgagaaaggggtgttttgGAGCtgtaa
agaaaaagaatttgaaatcaCTATAAAAACACAGGTAATTTCTAATCTCA
TACTCTCGGATACCTAATAGCtgtccccccccgctaattaatttttcgaa
aattttccacctaggacattcttattccacccccccccgcttattaaatt
ttgagaaaatgtttttgaaggttcccttttttgtcccaattctgctgtat
tagcctccttttcaaaaatgttccacccaggacattgttattccaacccc
ccccgcttattaagttttgagatttttcccaACCCCCCCCATCCCCcact
tattccaaccccccggcaattaggtacCCATTTATTTTATCCCAATACAC
GAattttcctattagcagattcatgtaaaaaagtcacgaaaaaaccgCCG
AataaagctctgattggctgaaagcACACATtagcatttttcttttcttc
aaaatgttcaaagtaTAAAGATAATGTTTGTATATCTCAGGCAAGCAGAG
CTTCACTCGACTttctttcgcgatttttttaacattaatCTACTAATAGG
GAATTTGTGTATTGGCTGAAGAATTTTAACTCAGGTCAAATAGACAGGGG
TATTACACTGAGTTTCAATTCGATTTTAGGTCTCATGGTGCAAAAATGAT
CTCTGCAATACAATTGATAAAGACTTATTCGCAACCAAGCGACAAATTTA
TTTCGGCTCAAGCTCAACAACAACTAGATCTATACTATGGATTAATTTTT
TGGCAATGCAAGTTTATCGCTTTGTATTTAGTGACGTGATAATGTGATGA
AAATATGATCCATAGATTACTGACCAGATGAATCTGTGGTTTGGAGGGTA
TGAAAGTTACCTCTCGCTTATGAAAGTGAGTCGTCGGTATTCGGATTGGT
TTTCTATTAAATTTGGTAATGATATGTGAACTATgacataaatattttaa
tttataatattcaatatattttctAATATTAAAGAGTATTCTAAGCTGCA
AGCCACTAACCTTGACTGTCAGCCTTAGAGCCTACATTATGCATAAAAAC
TTTTTAgttcaagaaaaaaaagctgggaaacattttccctacacttttga
tttaaataatagcaaccctgtctcacagccccggtggaacttgtTACCAC
CAGTGGGAAAATTCTATTCCTATGTCAAATAGTCCAGTGTGATggttttg
gattgaaattcaaATGGAGGGATGTAAACACAAAGTCAATTCTCCAATGG
CGcggaaattgtagggtattatTTCCGTGGTAGAGGGTACAACATGTTTA
AGCTTGACTAAAATGTCCGTATTACaccaaaaaaattcttaaacatTAAA
TTCAATACATGAATTACCGTTCATCCTACACAAGTTACAACATTTTAAAG
CTACCATTGTTTGTGGCATAAATTTTCTCTCACAACTATAACACGGTAGC
AGAAACGTAGAATGTGCTTGTACCAATCGTGAAAGCATCTGTTCCCGTGT
AGCGTGCAGCTGACACACACGTGCAGCACGATCAATTAAATTTAGTCCAA
CGAAATTTGATGACGACTTCTCATCGAATCGGATCTCATGCTTAATTGAT
TGGCCACATAATAAACAACTTTCAGCAGCGGAGAGAACGCTAGATGGATG
TAACTTCTTCGTGATATCACATTGCCGACAAACGTAAAGTGAAGCGTCGT
GTATTGTAGTCCTCATCGTACACCGAAATGTCTACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037455XLOC_037455Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059494-exon-scaffold_329-1491911889:22542..22795TCONS_00059494-exon-scaffold_329-1491911889:22542..22795Clytia hemisphaericaexon
TCONS_00059494-exon-scaffold_329-1510915933:22542..22795TCONS_00059494-exon-scaffold_329-1510915933:22542..22795Clytia hemisphaericaexon
TCONS_00059494-exon-scaffold_329-1575043694:22542..22795TCONS_00059494-exon-scaffold_329-1575043694:22542..22795Clytia hemisphaericaexon
TCONS_00059494-exon-scaffold_329-1491911889:30021..31130TCONS_00059494-exon-scaffold_329-1491911889:30021..31130Clytia hemisphaericaexon
TCONS_00059494-exon-scaffold_329-1510915933:30021..31130TCONS_00059494-exon-scaffold_329-1510915933:30021..31130Clytia hemisphaericaexon
TCONS_00059494-exon-scaffold_329-1575043694:30021..31130TCONS_00059494-exon-scaffold_329-1575043694:30021..31130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:22542..31130 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.510341	0.446531	0.0929712	0.238181	0	0	0.062478	0.07035	0.114858	0.119428	0.104356	0	0.0552701	0.177931	0.0294461	0	0.385021	0.216192	0.753926	1.43795	0.0836935	0.276474	0.465772	0.598902	0.402999	0.474217	0	0	0.147919	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059494 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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