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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059495 ID=TCONS_00059495|Name=TCONS_00059495|organism=Clytia hemisphaerica|type=transcript|length=1437bp
TCTTCCCCTTGATGGAATAGTATGAGACGAAAATTGGTGAATATCCTGTT
GGTGCTACTCAATGTATCGTCGAGAGTTTTATCACTGAAATGCTACAAAT
GTATACATGCAGGAAATTGCCATAACAATATGACCGTGGAGTGTTCCACA
AAAGAGAACGCGTGTTTTACGCATTACGAAACAAGGGAAGTTTATTCATC
ACGAGATTACCGAGATCATGTTGAATTATACGTACATCAAGACTGTGGTA
ATGAAAACGAACAATTTTGCAGTGACGCCGAGATGTGTGGACGCCGGGCA
ATCTCAGTTGGATTTGTCTCATGTAAGGTCTCATGGTGCAAAAATGATCT
CTGCAATACAATTGATAAAGACTTATTCGCAACCAAGCGACAAATTTATT
TCGGCTCAAGCTCAACAACAACTAGATCTATACTATGGATTAATTTTTTG
GCAATGCAAGTTTATCGCTTTGTATTTAGTGACGTGATAATGTGATGAAA
ATATGATCCATAGATTACTGACCAGATGAATCTGTGGTTTGGAGGGTATG
AAAGTTACCTCTCGCTTATGAAAGTGAGTCGTCGGTATTCGGATTGGTTT
TCTATTAAATTTGGTAATGATATGTGAACTATgacataaatattttaatt
tataatattcaatatattttctAATATTAAAGAGTATTCTAAGCTGCAAG
CCACTAACCTTGACTGTCAGCCTTAGAGCCTACATTATGCATAAAAACTT
TTTAgttcaagaaaaaaaagctgggaaacattttccctacacttttgatt
taaataatagcaaccctgtctcacagccccggtggaacttgtTACCACCA
GTGGGAAAATTCTATTCCTATGTCAAATAGTCCAGTGTGATggttttgga
ttgaaattcaaATGGAGGGATGTAAACACAAAGTCAATTCTCCAATGGCG
cggaaattgtagggtattatTTCCGTGGTAGAGGGTACAACATGTTTAAG
CTTGACTAAAATGTCCGTATTACaccaaaaaaattcttaaacatTAAATT
CAATACATGAATTACCGTTCATCCTACACAAGTTACAACATTTTAAAGCT
ACCATTGTTTGTGGCATAAATTTTCTCTCACAACTATAACACGGTAGCAG
AAACGTAGAATGTGCTTGTACCAATCGTGAAAGCATCTGTTCCCGTGTAG
CGTGCAGCTGACACACACGTGCAGCACGATCAATTAAATTTAGTCCAACG
AAATTTGATGACGACTTCTCATCGAATCGGATCTCATGCTTAATTGATTG
GCCACATAATAAACAACTTTCAGCAGCGGAGAGAACGCTAGATGGATGTA
ACTTCTTCGTGATATCACATTGCCGACAAACGTAAAGTGAAGCGTCGTGT
ATTGTAGTCCTCATCGTACACCGAAATGTCTACAAGA Run BLAST on NCBI protein sequence of TCONS_00059495-protein >TCONS_00059495-protein ID=TCONS_00059495-protein|Name=TCONS_00059495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MRRKLVNILLVLLNVSSRVLSLKCYKCIHAGNCHNNMTVECSTKENACFT
HYETREVYSSRDYRDHVELYVHQDCGNENEQFCSDAEMCGRRAISVGFVS
CKVSWCKNDLCNTIDKDLFATKRQIYFGSSSTTTRSILWINFLAMQVYRF
VFSDVIM Run BLAST on NCBI transcript from alignment at scaffold_329:27536..31130+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059495 ID=TCONS_00059495|Name=TCONS_00059495|organism=Clytia hemisphaerica|type=transcript|length=3595bp|location=Sequence derived from alignment at scaffold_329:27536..31130+ (Clytia hemisphaerica)
TCTTCCCCTTGATGGAATAGTATGAGACGAAAATTGGTGAATATCCTGTT
GGTGCTACTCAATGTATCGTCGAGAGGTAAGGCTGGCAATTTTCTGTGCT
TATTTACGGCACACCTAGACACTTTGTTTTCAAAAGAATCTACATACTTT
ATATATATCTAATaagaacacccctgtgtcacagaccattgagtttaaag
cccgaagggctagaatagaatctctaacctttctcaggcaagaaaaagtg
aagccttaaaaaatgcactgtatttttgacgacagattNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaat
ctagcaattcctttgtttacgattgatatttttttcgaaatttagcggta
aattttagtttcaatctgtcatttgtgtaaaaaccaggcgatcCGCTCAA
GGcagcgcaactttggtaggatttgttggcttcaaatcctaccaaggaga
ttcgattctagcccttcgggcttatactttattgtcacagacccgctgag
accccagccccactgggaaatttagccaaaattttgtccccgatgggaaa
ataccctggaatttcagccccactggaaaaatgaCTTTTATTTCCTCCCC
ACTCAAAATTGAATGTTTAAAAACTGCACTCAAAAATTATCCCCATTCGA
TTTTTCAgccttagaacaatagaattgctatatccccattgggattgcAA
TAGGAAaatttatccccactgagaaacTGAGAAAAAAGGTTCcacggggc
tgtgagacaggggtgtataagaaTACACTgaagaaattggccaaaacatt
AAGAATATACTAAGAATATTAGCATCATGGAGTTTAGCAGCTGAACCTAT
GAttgccattttaagagcatttttacctGCAAATTACCAATCACCCCTCG
TTAAGGctcaaaaatttcacaaaaaatgtcatGAGGTATATATTTTATGT
TAATTTTAGATAGAATTTAGATCCTAGCCTAAGAATacctcaaaattatt
tttagggTGATTATCCGCCAAAAGGTTAAGAAGACCAAAATGTCATTACG
AAGGTCATTATTCTATATACTATGGACCTTGAATTAGAGGTCTGATAGAA
AACAACGATCTGGGGAGCTCATTTCATCATAGatcattttctatttctat
ttttcataTATTTCATTTGATTTAGTTTTATCACTGAAATGCTACAAATG
TATACATGCAGGAAATTGCCATAACAATATGACCGTGGAGTGTTCCACAA
AAGAGAACGCGTGTTTTACGCATTACGAAACAAGGGAAGTTTATTCATCA
CGAGATTACCGAGATCATGTTGAATTATACGTACATCAAGACTGTGGTAA
TGAAAACGAACAATTTTGCAGTGACGCCGAGATGTGTGGACGCCGGGCAA
TCTCAGTTGGATTTGTCTCATGTAAGGTAAGGTTGTTTCAGTGTCACTAT
AAAATATGGTATATAAAATACACCCTGTATCGTCGCACGCCTATTTCTAC
AGGGTATTTCTACTTTGATTTTAGAAATCACACTGAccacttctcacaga
cccgttgttttcaagtcaggaaattcagtggggatgggaaaaatagcata
ttattttgcagtgaggattggtttaatggattttttcggtggggacaaaa
attggaagataattttccaccgggggcgatattttggcaaatttttccag
tgggaacgAGTCCCGCTcgaccgggtctgtgagaaaggggtgttttgGAG
CtgtaaagaaaaagaatttgaaatcaCTATAAAAACACAGGTAATTTCTA
ATCTCATACTCTCGGATACCTAATAGCtgtccccccccgctaattaattt
ttcgaaaattttccacctaggacattcttattccacccccccccgcttat
taaattttgagaaaatgtttttgaaggttcccttttttgtcccaattctg
ctgtattagcctccttttcaaaaatgttccacccaggacattgttattcc
aaccccccccgcttattaagttttgagatttttcccaACCCCCCCCATCC
CCcacttattccaaccccccggcaattaggtacCCATTTATTTTATCCCA
ATACACGAattttcctattagcagattcatgtaaaaaagtcacgaaaaaa
ccgCCGAataaagctctgattggctgaaagcACACATtagcatttttctt
ttcttcaaaatgttcaaagtaTAAAGATAATGTTTGTATATCTCAGGCAA
GCAGAGCTTCACTCGACTttctttcgcgatttttttaacattaatCTACT
AATAGGGAATTTGTGTATTGGCTGAAGAATTTTAACTCAGGTCAAATAGA
CAGGGGTATTACACTGAGTTTCAATTCGATTTTAGGTCTCATGGTGCAAA
AATGATCTCTGCAATACAATTGATAAAGACTTATTCGCAACCAAGCGACA
AATTTATTTCGGCTCAAGCTCAACAACAACTAGATCTATACTATGGATTA
ATTTTTTGGCAATGCAAGTTTATCGCTTTGTATTTAGTGACGTGATAATG
TGATGAAAATATGATCCATAGATTACTGACCAGATGAATCTGTGGTTTGG
AGGGTATGAAAGTTACCTCTCGCTTATGAAAGTGAGTCGTCGGTATTCGG
ATTGGTTTTCTATTAAATTTGGTAATGATATGTGAACTATgacataaata
ttttaatttataatattcaatatattttctAATATTAAAGAGTATTCTAA
GCTGCAAGCCACTAACCTTGACTGTCAGCCTTAGAGCCTACATTATGCAT
AAAAACTTTTTAgttcaagaaaaaaaagctgggaaacattttccctacac
ttttgatttaaataatagcaaccctgtctcacagccccggtggaacttgt
TACCACCAGTGGGAAAATTCTATTCCTATGTCAAATAGTCCAGTGTGATg
gttttggattgaaattcaaATGGAGGGATGTAAACACAAAGTCAATTCTC
CAATGGCGcggaaattgtagggtattatTTCCGTGGTAGAGGGTACAACA
TGTTTAAGCTTGACTAAAATGTCCGTATTACaccaaaaaaattcttaaac
atTAAATTCAATACATGAATTACCGTTCATCCTACACAAGTTACAACATT
TTAAAGCTACCATTGTTTGTGGCATAAATTTTCTCTCACAACTATAACAC
GGTAGCAGAAACGTAGAATGTGCTTGTACCAATCGTGAAAGCATCTGTTC
CCGTGTAGCGTGCAGCTGACACACACGTGCAGCACGATCAATTAAATTTA
GTCCAACGAAATTTGATGACGACTTCTCATCGAATCGGATCTCATGCTTA
ATTGATTGGCCACATAATAAACAACTTTCAGCAGCGGAGAGAACGCTAGA
TGGATGTAACTTCTTCGTGATATCACATTGCCGACAAACGTAAAGTGAAG
CGTCGTGTATTGTAGTCCTCATCGTACACCGAAATGTCTACAAGA Coding sequence (CDS) from alignment at scaffold_329:27536..31130+ >TCONS_00059495 ID=TCONS_00059495|Name=TCONS_00059495|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_329:27536..31130+ (Clytia hemisphaerica)
ATGAGACGAAAATTGGTGAATATCCTGTTGGTGCTACTCAATGTATCGTC
GAGAGTTTTATCACTGAAATGCTACAAATGTATACATGCAGGAAATTGCC
ATAACAATATGACCGTGGAGTGTTCCACAAAAGAGAACGCGTGTTTTACG
CATTACGAAACAAGGGAAGTTTATTCATCACGAGATTACCGAGATCATGT
TGAATTATACGTACATCAAGACTGTGGTAATGAAAACGAACAATTTTGCA
GTGACGCCGAGATGTGTGGACGCCGGGCAATCTCAGTTGGATTTGTCTCA
TGTAAGGTCTCATGGTGCAAAAATGATCTCTGCAATACAATTGATAAAGA
CTTATTCGCAACCAAGCGACAAATTTATTTCGGCTCAAGCTCAACAACAA
CTAGATCTATACTATGGATTAATTTTTTGGCAATGCAAGTTTATCGCTTT
GTATTTAGTGACGTGATAATGTGAATGAGACGAAAATTGGTGAATATCCT
GTTGGTGCTACTCAATGTATCGTCGAGAGTTTTATCACTGAAATGCTACA
AATGTATACATGCAGGAAATTGCCATAACAATATGACCGTGGAGTGTTCC
ACAAAAGAGAACGCGTGTTTTACGCATTACGAAACAAGGGAAGTTTATTC
ATCACGAGATTACCGAGATCATGTTGAATTATACGTACATCAAGACTGTG
GTAATGAAAACGAACAATTTTGCAGTGACGCCGAGATGTGTGGACGCCGG
GCAATCTCAGTTGGATTTGTCTCATGTAAGGTCTCATGGTGCAAAAATGA
TCTCTGCAATACAATTGATAAAGACTTATTCGCAACCAAGCGACAAATTT
ATTTCGGCTCAAGCTCAACAACAACTAGATCTATACTATGGATTAATTTT
TTGGCAATGCAAGTTTATCGCTTTGTATTTAGTGACGTGATAATGTGAAT
GAGACGAAAATTGGTGAATATCCTGTTGGTGCTACTCAATGTATCGTCGA
GAGTTTTATCACTGAAATGCTACAAATGTATACATGCAGGAAATTGCCAT
AACAATATGACCGTGGAGTGTTCCACAAAAGAGAACGCGTGTTTTACGCA
TTACGAAACAAGGGAAGTTTATTCATCACGAGATTACCGAGATCATGTTG
AATTATACGTACATCAAGACTGTGGTAATGAAAACGAACAATTTTGCAGT
GACGCCGAGATGTGTGGACGCCGGGCAATCTCAGTTGGATTTGTCTCATG
TAAGGTCTCATGGTGCAAAAATGATCTCTGCAATACAATTGATAAAGACT
TATTCGCAACCAAGCGACAAATTTATTTCGGCTCAAGCTCAACAACAACT
AGATCTATACTATGGATTAATTTTTTGGCAATGCAAGTTTATCGCTTTGT
ATTTAGTGACGTGATAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059495-exon-scaffold_329-1491911889:27536..27611 | TCONS_00059495-exon-scaffold_329-1491911889:27536..27611 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1510915933:27536..27611 | TCONS_00059495-exon-scaffold_329-1510915933:27536..27611 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1575043694:27536..27611 | TCONS_00059495-exon-scaffold_329-1575043694:27536..27611 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1491911889:28811..29061 | TCONS_00059495-exon-scaffold_329-1491911889:28811..29061 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1510915933:28811..29061 | TCONS_00059495-exon-scaffold_329-1510915933:28811..29061 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1575043694:28811..29061 | TCONS_00059495-exon-scaffold_329-1575043694:28811..29061 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1491911889:30021..31130 | TCONS_00059495-exon-scaffold_329-1491911889:30021..31130 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1510915933:30021..31130 | TCONS_00059495-exon-scaffold_329-1510915933:30021..31130 | Clytia hemisphaerica | exon |
| TCONS_00059495-exon-scaffold_329-1575043694:30021..31130 | TCONS_00059495-exon-scaffold_329-1575043694:30021..31130 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:27536..31130 + |
Blast
The following BLAST results are available for this feature:
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