TCONS_00059624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059624
Unique NameTCONS_00059624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1388

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=transcript|length=1388bp
gttTCAAATGTATTGCATTATTTTcccttttgtatttttcagatGAATTC
ACCTTATGGTCAGGTAGCATGGTGGGGATTTTCCCCATCATTagatataa
taaaacatatgaAAACACACGAAGTCAATCAAAGTAAAGAAATGAATGTC
TTATTGGTAGGATCTGCAGACAATCGACACATACTTCACACCTTGTCAAA
TTGTCATGACTTTGAtgggaaaatcaatttttatttggTTGAATCAAATC
TGGAGAATATGGCGCGTCAAATGTTATTGACTAACCTAGCTTTTGAGCTA
CCTTCTAAACTCAATATccaagaaaaaagtgaaatttattTAGAGCTATT
TGGTAATTCCCTATTACGCCATGATACTGAGGATTATTTGGTTGAACGCT
CAAATGAATATGTAAAGATGATAACAGAGCCTTCATATTCTGAAAAGACA
TATCCTTATTTCGATTTTTCCAATTTGAAATTCAAGGAGGTTGACCAGTT
GGAAAGTATTTTTAAATTCTGGAGAAATACCAACAAGGATGTCTTTGATA
TTGGTCAGAGTTGGGATAACCGTGTCAGAGCACACCTTGGAGTCCGCTAT
GATGCAAAGGACAATGCCTTTGATTGGGAATATAGTATGAGTTTAAAAGA
AAAGGCTTCTATTGTGAATTGGAACGAATATAAACAGTGGAGAGGTAATG
GTGTTGCTTTTCAGTTTCGTGATGAAACTGCTTATGTTTACCCTAACAAG
TCACTTGCTTCTGGATTGATTTTCAAGAAGGATGGGGAGCGCATACCTAA
ACGTGGCTATTGGGGTGATATTTTGAATAGCCCCTATGTGGCTTTTGGTG
TTGAATCTCAGAATGAATCTTTATTCAAAAAAGCTAACAATGTACACACA
CAGACAGCCACAGATGTTTCTATTTataatttgaaatcttttatgaGTCG
TGTTTTAACTGGTAGAAATgtggaaaacgaaagtgaaagtgacgGTGTTA
TCATTGAAGAAGTCTCGGAAAATGAAGTTGAAGATGAAATGCTGAGTATT
GTCAAAGAGaaattcaaattgatttttcttcCACTGGATTGCGTTGGTTC
GCTTCATAAGAAAAGTAAATTCAAGCGACGTTTCGATATGGTGTTTTTCT
CTAACAGTATGGTTCATTGCCTTGATTATTCAATTAGTAGTTTATTCCAT
GACAAGGAATCAATATTAGTCATCGAGTCAACAAAATTTATGTTAGATTT
GAAAGTGGAAATGCATGAGGAATATGCTAAGAAAATTAAAGGAATGGCAA
GCACTTCTTGTTGCCAACCATGTAAACAATTTAAATGCCAACAAGATTCT
TATGCCGTCTTCAAATACCAAGGCGAATAGTTATTGNN
Run BLAST on NCBI

protein sequence of TCONS_00059624-protein

>TCONS_00059624-protein ID=TCONS_00059624-protein|Name=TCONS_00059624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
VSNVLHYFPFCIFQMNSPYGQVAWWGFSPSLDIIKHMKTHEVNQSKEMNV
LLVGSADNRHILHTLSNCHDFDGKINFYLVESNLENMARQMLLTNLAFEL
PSKLNIQEKSEIYLELFGNSLLRHDTEDYLVERSNEYVKMITEPSYSEKT
YPYFDFSNLKFKEVDQLESIFKFWRNTNKDVFDIGQSWDNRVRAHLGVRY
DAKDNAFDWEYSMSLKEKASIVNWNEYKQWRGNGVAFQFRDETAYVYPNK
SLASGLIFKKDGERIPKRGYWGDILNSPYVAFGVESQNESLFKKANNVHT
QTATDVSIYNLKSFMSRVLTGRNVENESESDGVIIEEVSENEVEDEMLSI
VKEKFKLIFLPLDCVGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFH
DKESILVIESTKFMLDLKVEMHEEYAKKIKGMASTSCCQPCKQFKCQQDS
YAVFKYQGE
Run BLAST on NCBI

transcript from alignment at scaffold_329:54854..56241

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=transcript|length=1388bp|location=Sequence derived from alignment at scaffold_329:54854..56241 (Clytia hemisphaerica)
NNCAATAACTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTG GCATTTAAATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTT TAATTTTCTTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATA AATTTTGTTGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACT ACTAATTGAATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCA TATCGAAACGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAA TCCAGTGgaagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCAT TTCATCTTCAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcac tttcactttcgttttccacATTTCTACCAGTTAAAACACGACtcataaaa gatttcaaattatAAATAGAAACATCTGTGGCTGTCTGTGTGTGTACATT GTTAGCTTTTTTGAATAAAGATTCATTCTGAGATTCAACACCAAAAGCCA CATAGGGGCTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCGC TCCCCATCCTTCTTGAAAATCAATCCAGAAGCAAGTGACTTGTTAGGGTA AACATAAGCAGTTTCATCACGAAACTGAAAAGCAACACCATTACCTCTCC ACTGTTTATATTCGTTCCAATTCACAATAGAAGCCTTTTCTTTTAAACTC ATACTATATTCCCAATCAAAGGCATTGTCCTTTGCATCATAGCGGACTCC AAGGTGTGCTCTGACACGGTTATCCCAACTCTGACCAATATCAAAGACAT CCTTGTTGGTATTTCTCCAGAATTTAAAAATACTTTCCAACTGGTCAACC TCCTTGAATTTCAAATTGGAAAAATCGAAATAAGGATATGTCTTTTCAGA ATATGAAGGCTCTGTTATCATCTTTACATATTCATTTGAGCGTTCAACCA AATAATCCTCAGTATCATGGCGTAATAGGGAATTACCAAATAGCTCTAaa taaatttcacttttttcttggATATTGAGTTTAGAAGGTAGCTCAAAAGC TAGGTTAGTCAATAACATTTGACGCGCCATATTCTCCAGATTTGATTCAA ccaaataaaaattgattttcccaTCAAAGTCATGACAATTTGACAAGGTG TGAAGTATGTGTCGATTGTCTGCAGATCCTACCAATAAGACATTCATTTC TTTACTTTGATTGACTTCGTGTGTTTtcatatgttttattatatctAATG ATGGGGAAAATCCCCACCATGCTACCTGACCATAAGGTGAATTCatctga aaaatacaaaagggAAAATAATGCAATACATTTGAaac

Coding sequence (CDS) from alignment at scaffold_329:54854..56241

>TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_329:54854..56241 (Clytia hemisphaerica)
CTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTGGCATTTAA
ATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTTTAATTTTC
TTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATAAATTTTGT
TGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACTACTAATTG
AATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCATATCGAAA
CGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAATCCAGTGg
aagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCATTTCATCTT
CAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcactttcactt
tcgttttccacATTTCTACCAGTTAAAACACGACtcataaaagatttcaa
attatAAATAGAAACATCTGTGGCTGTCTGTGTGTGTACATTGTTAGCTT
TTTTGAATAAAGATTCATTCTGAGATTCAACACCAAAAGCCACATAGGGG
CTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCGCTCCCCATC
CTTCTTGAAAATCAATCCAGAAGCAAGTGACTTGTTAGGGTAAACATAAG
CAGTTTCATCACGAAACTGAAAAGCAACACCATTACCTCTCCACTGTTTA
TATTCGTTCCAATTCACAATAGAAGCCTTTTCTTTTAAACTCATACTATA
TTCCCAATCAAAGGCATTGTCCTTTGCATCATAGCGGACTCCAAGGTGTG
CTCTGACACGGTTATCCCAACTCTGACCAATATCAAAGACATCCTTGTTG
GTATTTCTCCAGAATTTAAAAATACTTTCCAACTGGTCAACCTCCTTGAA
TTTCAAATTGGAAAAATCGAAATAAGGATATGTCTTTTCAGAATATGAAG
GCTCTGTTATCATCTTTACATATTCATTTGAGCGTTCAACCAAATAATCC
TCAGTATCATGGCGTAATAGGGAATTACCAAATAGCTCTAaataaatttc
acttttttcttggATATTGAGTTTAGAAGGTAGCTCAAAAGCTAGGTTAG
TCAATAACATTTGACGCGCCATATTCTCCAGATTTGATTCAAccaaataa
aaattgattttcccaTCAAAGTCATGACAATTTGACAAGGTGTGAAGTAT
GTGTCGATTGTCTGCAGATCCTACCAATAAGACATTCATTTCTTTACTTT
GATTGACTTCGTGTGTTTtcatatgttttattatatctAATGATGGGGAA
AATCCCCACCATGCTACCTGACCATAAGGTGAATTCatctgaaaaataca
aaagggAAAATAATGCAATACATTTGAaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037504XLOC_037504Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059624-exon-scaffold_329-1491911889:54854..56241TCONS_00059624-exon-scaffold_329-1491911889:54854..56241Clytia hemisphaericaexon
TCONS_00059624-exon-scaffold_329-1510915933:54854..56241TCONS_00059624-exon-scaffold_329-1510915933:54854..56241Clytia hemisphaericaexon
TCONS_00059624-exon-scaffold_329-1575043694:54854..56241TCONS_00059624-exon-scaffold_329-1575043694:54854..56241Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059624-proteinTCONS_00059624-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_329supercontigscaffold_329:54854..56241 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0.329088 tpm) - - (23.0014 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.05513 8.48983 1.58331 0.329088 23.0014 17.0283 8.74088 9.28101 4.67967 5.59964 3.5272 2.27473 1.7664 1.23658 2.09774 2.57793 3.2656 3.23099 1.46174 1.42715 2.79713 3.63976 11.3641 10.2703 9.01328 10.3696 2.76577 1.65471 5.73373 6.37816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR028235DNAAF3_C
IPR027974DUF4470
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
20040060080010001200Expect = 1.86e-93 / Id = 33.64SequenceDAAF3
Match NameE-valueIdentityDescription
DAAF31.862e-9333.64Dynein assembly factor 3, axonemal OS=Homo sapiens... [more]
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