Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=transcript|length=1388bp gttTCAAATGTATTGCATTATTTTcccttttgtatttttcagatGAATTC ACCTTATGGTCAGGTAGCATGGTGGGGATTTTCCCCATCATTagatataa taaaacatatgaAAACACACGAAGTCAATCAAAGTAAAGAAATGAATGTC TTATTGGTAGGATCTGCAGACAATCGACACATACTTCACACCTTGTCAAA TTGTCATGACTTTGAtgggaaaatcaatttttatttggTTGAATCAAATC TGGAGAATATGGCGCGTCAAATGTTATTGACTAACCTAGCTTTTGAGCTA CCTTCTAAACTCAATATccaagaaaaaagtgaaatttattTAGAGCTATT TGGTAATTCCCTATTACGCCATGATACTGAGGATTATTTGGTTGAACGCT CAAATGAATATGTAAAGATGATAACAGAGCCTTCATATTCTGAAAAGACA TATCCTTATTTCGATTTTTCCAATTTGAAATTCAAGGAGGTTGACCAGTT GGAAAGTATTTTTAAATTCTGGAGAAATACCAACAAGGATGTCTTTGATA TTGGTCAGAGTTGGGATAACCGTGTCAGAGCACACCTTGGAGTCCGCTAT GATGCAAAGGACAATGCCTTTGATTGGGAATATAGTATGAGTTTAAAAGA AAAGGCTTCTATTGTGAATTGGAACGAATATAAACAGTGGAGAGGTAATG GTGTTGCTTTTCAGTTTCGTGATGAAACTGCTTATGTTTACCCTAACAAG TCACTTGCTTCTGGATTGATTTTCAAGAAGGATGGGGAGCGCATACCTAA ACGTGGCTATTGGGGTGATATTTTGAATAGCCCCTATGTGGCTTTTGGTG TTGAATCTCAGAATGAATCTTTATTCAAAAAAGCTAACAATGTACACACA CAGACAGCCACAGATGTTTCTATTTataatttgaaatcttttatgaGTCG TGTTTTAACTGGTAGAAATgtggaaaacgaaagtgaaagtgacgGTGTTA TCATTGAAGAAGTCTCGGAAAATGAAGTTGAAGATGAAATGCTGAGTATT GTCAAAGAGaaattcaaattgatttttcttcCACTGGATTGCGTTGGTTC GCTTCATAAGAAAAGTAAATTCAAGCGACGTTTCGATATGGTGTTTTTCT CTAACAGTATGGTTCATTGCCTTGATTATTCAATTAGTAGTTTATTCCAT GACAAGGAATCAATATTAGTCATCGAGTCAACAAAATTTATGTTAGATTT GAAAGTGGAAATGCATGAGGAATATGCTAAGAAAATTAAAGGAATGGCAA GCACTTCTTGTTGCCAACCATGTAAACAATTTAAATGCCAACAAGATTCT TATGCCGTCTTCAAATACCAAGGCGAATAGTTATTGNN Run BLAST on NCBI protein sequence of TCONS_00059624-protein >TCONS_00059624-protein ID=TCONS_00059624-protein|Name=TCONS_00059624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=459bp
VSNVLHYFPFCIFQMNSPYGQVAWWGFSPSLDIIKHMKTHEVNQSKEMNV LLVGSADNRHILHTLSNCHDFDGKINFYLVESNLENMARQMLLTNLAFEL PSKLNIQEKSEIYLELFGNSLLRHDTEDYLVERSNEYVKMITEPSYSEKT YPYFDFSNLKFKEVDQLESIFKFWRNTNKDVFDIGQSWDNRVRAHLGVRY DAKDNAFDWEYSMSLKEKASIVNWNEYKQWRGNGVAFQFRDETAYVYPNK SLASGLIFKKDGERIPKRGYWGDILNSPYVAFGVESQNESLFKKANNVHT QTATDVSIYNLKSFMSRVLTGRNVENESESDGVIIEEVSENEVEDEMLSI VKEKFKLIFLPLDCVGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFH DKESILVIESTKFMLDLKVEMHEEYAKKIKGMASTSCCQPCKQFKCQQDS YAVFKYQGE Run BLAST on NCBI transcript from alignment at scaffold_329:54854..56241 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=transcript|length=1388bp|location=Sequence derived from alignment at scaffold_329:54854..56241 (Clytia hemisphaerica) NNCAATAACTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTG
GCATTTAAATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTT
TAATTTTCTTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATA
AATTTTGTTGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACT
ACTAATTGAATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCA
TATCGAAACGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAA
TCCAGTGgaagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCAT
TTCATCTTCAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcac
tttcactttcgttttccacATTTCTACCAGTTAAAACACGACtcataaaa
gatttcaaattatAAATAGAAACATCTGTGGCTGTCTGTGTGTGTACATT
GTTAGCTTTTTTGAATAAAGATTCATTCTGAGATTCAACACCAAAAGCCA
CATAGGGGCTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCGC
TCCCCATCCTTCTTGAAAATCAATCCAGAAGCAAGTGACTTGTTAGGGTA
AACATAAGCAGTTTCATCACGAAACTGAAAAGCAACACCATTACCTCTCC
ACTGTTTATATTCGTTCCAATTCACAATAGAAGCCTTTTCTTTTAAACTC
ATACTATATTCCCAATCAAAGGCATTGTCCTTTGCATCATAGCGGACTCC
AAGGTGTGCTCTGACACGGTTATCCCAACTCTGACCAATATCAAAGACAT
CCTTGTTGGTATTTCTCCAGAATTTAAAAATACTTTCCAACTGGTCAACC
TCCTTGAATTTCAAATTGGAAAAATCGAAATAAGGATATGTCTTTTCAGA
ATATGAAGGCTCTGTTATCATCTTTACATATTCATTTGAGCGTTCAACCA
AATAATCCTCAGTATCATGGCGTAATAGGGAATTACCAAATAGCTCTAaa
taaatttcacttttttcttggATATTGAGTTTAGAAGGTAGCTCAAAAGC
TAGGTTAGTCAATAACATTTGACGCGCCATATTCTCCAGATTTGATTCAA
ccaaataaaaattgattttcccaTCAAAGTCATGACAATTTGACAAGGTG
TGAAGTATGTGTCGATTGTCTGCAGATCCTACCAATAAGACATTCATTTC
TTTACTTTGATTGACTTCGTGTGTTTtcatatgttttattatatctAATG
ATGGGGAAAATCCCCACCATGCTACCTGACCATAAGGTGAATTCatctga
aaaatacaaaagggAAAATAATGCAATACATTTGAaac Coding sequence (CDS) from alignment at scaffold_329:54854..56241 >TCONS_00059624 ID=TCONS_00059624|Name=TCONS_00059624|organism=Clytia hemisphaerica|type=CDS|length=1380bp|location=Sequence derived from alignment at scaffold_329:54854..56241 (Clytia hemisphaerica) CTATTCGCCTTGGTATTTGAAGACGGCATAAGAATCTTGTTGGCATTTAA ATTGTTTACATGGTTGGCAACAAGAAGTGCTTGCCATTCCTTTAATTTTC TTAGCATATTCCTCATGCATTTCCACTTTCAAATCTAACATAAATTTTGT TGACTCGATGACTAATATTGATTCCTTGTCATGGAATAAACTACTAATTG AATAATCAAGGCAATGAACCATACTGTTAGAGAAAAACACCATATCGAAA CGTCGCTTGAATTTACTTTTCTTATGAAGCGAACCAACGCAATCCAGTGg aagaaaaatcaatttgaatttCTCTTTGACAATACTCAGCATTTCATCTT CAACTTCATTTTCCGAGACTTCTTCAATGATAACACcgtcactttcactt tcgttttccacATTTCTACCAGTTAAAACACGACtcataaaagatttcaa attatAAATAGAAACATCTGTGGCTGTCTGTGTGTGTACATTGTTAGCTT TTTTGAATAAAGATTCATTCTGAGATTCAACACCAAAAGCCACATAGGGG CTATTCAAAATATCACCCCAATAGCCACGTTTAGGTATGCGCTCCCCATC CTTCTTGAAAATCAATCCAGAAGCAAGTGACTTGTTAGGGTAAACATAAG CAGTTTCATCACGAAACTGAAAAGCAACACCATTACCTCTCCACTGTTTA TATTCGTTCCAATTCACAATAGAAGCCTTTTCTTTTAAACTCATACTATA TTCCCAATCAAAGGCATTGTCCTTTGCATCATAGCGGACTCCAAGGTGTG CTCTGACACGGTTATCCCAACTCTGACCAATATCAAAGACATCCTTGTTG GTATTTCTCCAGAATTTAAAAATACTTTCCAACTGGTCAACCTCCTTGAA TTTCAAATTGGAAAAATCGAAATAAGGATATGTCTTTTCAGAATATGAAG GCTCTGTTATCATCTTTACATATTCATTTGAGCGTTCAACCAAATAATCC TCAGTATCATGGCGTAATAGGGAATTACCAAATAGCTCTAaataaatttc acttttttcttggATATTGAGTTTAGAAGGTAGCTCAAAAGCTAGGTTAG TCAATAACATTTGACGCGCCATATTCTCCAGATTTGATTCAAccaaataa aaattgattttcccaTCAAAGTCATGACAATTTGACAAGGTGTGAAGTAT GTGTCGATTGTCTGCAGATCCTACCAATAAGACATTCATTTCTTTACTTT GATTGACTTCGTGTGTTTtcatatgttttattatatctAATGATGGGGAA AATCCCCACCATGCTACCTGACCATAAGGTGAATTCatctgaaaaataca aaagggAAAATAATGCAATACATTTGAaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059624-exon-scaffold_329-1491911889:54854..56241 | TCONS_00059624-exon-scaffold_329-1491911889:54854..56241 | Clytia hemisphaerica | exon |
TCONS_00059624-exon-scaffold_329-1510915933:54854..56241 | TCONS_00059624-exon-scaffold_329-1510915933:54854..56241 | Clytia hemisphaerica | exon |
TCONS_00059624-exon-scaffold_329-1575043694:54854..56241 | TCONS_00059624-exon-scaffold_329-1575043694:54854..56241 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_329 | supercontig | scaffold_329:54854..56241 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00059624 vs. Swiss-Prot (Human)
Match: DAAF3 (Dynein assembly factor 3, axonemal OS=Homo sapiens GN=DNAAF3 PE=1 SV=3) HSP 1 Score: 296.59 bits (758), Expect = 1.862e-93 Identity = 145/431 (33.64%), Postives = 248/431 (57.54%), Query Frame = 1 Query: 70 WWGFSPSLDIIKHM-------KTHEVNQSKEMNVLLVGSADNRHILHTLSNCHDFDGK-INFYLVESNLENMARQMLLTNLAFELPSKLNIQEKSEIYLELFGNSLLRHDTEDYLVERSNEYVKMITEPSYSEKTYPYFDFSNLKFKEVDQLESIFKFWRNTNK--DVFDIGQSWDNRVRAHLGVRYDAKDNAFDWEYSMSLKEK-ASIVNWNEYKQWRGNGVAFQFRDETAYVYPNKSLASGLIFKKDGERIPKRGYWGDILNSPYVAFGVESQNESLFKKANNVHTQTATDVSIYNLKSFMSRV-------LTGRNVENESESDGXXXXXXXXXXXXXXMLSIVKEKFKLIFLPLDCVGSLHKKSKFKRRFDMVFFSNSMVHCLDYSISSLFHDKESILVIESTKFMLDLKVEMHEEYAKKIKGMASTS 1308
WWG SP+LD+ + V+ + E++VLL+GS D RH+L TLS + + NF+++E+NLE +AR ML+ +LA E P K+ +QE+SE +LE++GN+LLR ++ +++ ++ EP E+ P+ LKF+E D LE++F+FW K F + + WD+R+R +LG RYDA+ DW+ M L ++ A +++ E+++WR GVAF+ RD +AY PN++LASG + GER+ RGYWGDI P+VAFG+E+ +ESL + +N +TA +++ +N+ + V TG ++E + ++G + E F + FLPLD +LH KS + RF +++ + MVH L + + + L++E ++++D++ E + + +++ +A +
Sbjct: 16 WWGLSPALDLQAESPPVDPDSQADTVHSNPELDVLLLGSVDGRHLLRTLSRAKFWPRRRFNFFVLENNLEAVARHMLIFSLALEEPEKMGLQERSETFLEVWGNALLRPPVAAFVRAQADLLAHLVPEPDRLEEQLPWLSLRALKFRERDALEAVFRFWAGGEKGPQAFPMSRLWDSRLRHYLGSRYDARRGVSDWDLRMKLHDRGAQVIHPQEFRRWRDTGVAFELRDSSAYHVPNRTLASGRLLSYRGERVAARGYWGDIATGPFVAFGIEADDESLLRTSNGQPVKTAGEITQHNVTELLRDVAAWGRARATGGDLEEQQHAEGSPEPGTPA--------APTPESFTVHFLPLDSAQTLHHKSCYNGRFQLLYVACGMVHLLIPELGACVAPGGN-LIVELARYLVDVRQEQLQGFNTRVRELAQAA 437
The following BLAST results are available for this feature:
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