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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059516 ID=TCONS_00059516|Name=TCONS_00059516|organism=Clytia hemisphaerica|type=transcript|length=1273bpRun BLAST on NCBI protein sequence of Isocitrate/isopropylmalate dehydrogenase >TCONS_00059516-protein ID=TCONS_00059516-protein|Name=Isocitrate/isopropylmalate dehydrogenase|organism=Clytia hemisphaerica|type=polypeptide|length=389bp MAANSVWKSLKPSRIQSVLRRSLHTSRPSSNEARKFVTYDDPVEGAERKLRun BLAST on NCBI transcript from alignment at scaffold_329:328742..365733+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059516 ID=TCONS_00059516|Name=TCONS_00059516|organism=Clytia hemisphaerica|type=transcript|length=36992bp|location=Sequence derived from alignment at scaffold_329:328742..365733+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_329:328742..365733+ >TCONS_00059516 ID=TCONS_00059516|Name=TCONS_00059516|organism=Clytia hemisphaerica|type=CDS|length=16338bp|location=Sequence derived from alignment at scaffold_329:328742..365733+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059516 vs. Swiss-Prot (Human)
Match: IDH3B (Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Homo sapiens GN=IDH3B PE=1 SV=2) HSP 1 Score: 365.925 bits (938), Expect = 7.343e-123 Identity = 197/328 (60.06%), Postives = 246/328 (75.00%), Query Frame = 1
Query: 256 VTLIPGDGVGPELAGAVKHVFSSVGVPVDWDEIYVSDIGNFGGETSLDKVKLSMSKTGVGLKGALTTPSNILQHDQKSLNQNLRLELDLFANVVHCRSLPGIKTRHENVDICIIREQTEGEYSSLEHESVPGVIEMIKVITRKKSERIAKFAFDYAMKNGRKKVTCVHKANIMKLADGLFVESCQNIAEMYPKIKFEAMIVDNTCMQLVSRPQQFDVMVLPNLYGSIXXXXXXXXXXXXXXXPGKSLSRDFAIFEPGARHTYAQVAGRNIANPTAMLLTACDMLDHIHFLKHSRMIREAVHKTIDDGKYLTLDVGGSCSLSLFINKVI 1239
VT++PGDGVGPEL AVK VF + VPV++ E ++S++ N E L++V SM + V + G + TP + + S + LR +LDLFANVVH +SLPG TRH N+D+ IIREQTEGEYSSLEHES GVIE +K++TR KS+RIAKFAFDYA K GR KVT VHKANIMKL DGLF++ C+ +AE+YPKIKFE MI+DN CMQLV P QFDV+V+PNLYG+I++NL AGLVGGAGVVPG+S S ++A+FE GARH +AQ GRNIANPTAMLL+A +ML H++ HS MI +AV K I GK T D+GG + + FI VI
Sbjct: 51 VTMLPGDGVGPELMHAVKEVFKAAAVPVEFQEHHLSEVQNMASEEKLEQVLSSMKENKVAIIGKIHTPME-YKGELASYDMRLRRKLDLFANVVHVKSLPGYMTRHNNLDLVIIREQTEGEYSSLEHESARGVIECLKIVTRAKSQRIAKFAFDYATKKGRGKVTAVHKANIMKLGDGLFLQCCEEVAELYPKIKFETMIIDNCCMQLVQNPYQFDVLVMPNLYGNIIDNLAAGLVGGAGVVPGESYSAEYAVFETGARHPFAQAVGRNIANPTAMLLSASNMLRHLNLEYHSSMIADAVKKVIKVGKVRTRDMGGYSTTTDFIKSVI 377 The following BLAST results are available for this feature:
BLAST of TCONS_00059516 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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