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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059590 ID=TCONS_00059590|Name=TCONS_00059590|organism=Clytia hemisphaerica|type=transcript|length=1318bp
aaaataatcaaagaaaataaaattcatcGTCGATATTTTTTCGCGATATT
TAGATGCATTGAACAGGTTTTTCACATAGAACAAACATAATGGTCCATCA
AGGTTTTTACATAGAACAAACACAAAAATGATTGATTGTGGAGTAATGAA
TAACATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGAAA
CACAAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGATTGT
TGGAGCATCAATTTGAAGGAACAGCCAAATAATGAGATTTACGAATGTCA
TATTTTGGATACTGATCGATTTCGAAACGCGTCAAATTTTGTCTCTTCCT
CTACAGGAAATTCTCATTTTTCACTTGATCATGATTGTGAATGGGAGGAG
ACATGCATCAACccaaacaaaaaatgtattcCAAACTACTCTGATGGTTC
TTATGAATGTGTTTGCGAGCCTATTGGTAAATACGATATTCATTGCACAA
ACAGAAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATCG
GATTCTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTG
TGATAATTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAAA
TGTGGCTGAGAATTGATTTGGGTGGAatgaaacaaattaaatttattgat
attttcGATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTAC
AGATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCA
GTACTATAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGTT
TGTAACAAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCAA
TGGATGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAA
AATAAACTTTTACTATATCATACaggattttttgcaaaatagtATACTGA
AAAAAGTAaggcaatttttagaaagagaaaaatatcaAGTCATAAATGCA
CAAAGGTATGACTTTTCAACACTGGAGACCAATTAAGTTCTCCTAAAATA
AGTTAACTCAAAACTTTTGTTGatttaaaagattaaaaagtttaaaagat
aAAATCAATTTAAGAAAAAGTTTTCTTCGCTTTATACTGCttaaaaaaat
acattcaatTAGCCTTTCATTAACGAGAAATTTGACTGACAAGCTGCATA
GGTTTGACCATAAAAATGGGAAATTTCAtcaaagtgacaaaaaagagAGC
TGTCAATCAAAACTTAAT Run BLAST on NCBI transcript from alignment at scaffold_329:359534..364200- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059590 ID=TCONS_00059590|Name=TCONS_00059590|organism=Clytia hemisphaerica|type=transcript|length=4667bp|location=Sequence derived from alignment at scaffold_329:359534..364200- (Clytia hemisphaerica)
AAAATAATCAAAGAAAATAAAATTCATCGTCGATATTTTTTCGCGATATT
TAGATGCATTGAACAGGTTTTTCACATAGAACAAACATAATGGTCCATCA
AGGTTTTTACATAGAACAAACACAAAAATGATTGATTGTGGAGTAATGAA
TAACATTTTGGCCTTATATTTCTTCATCAATGTAATTCAATATGGCGAAA
CACAAATTTTACGAAGGGTGGATGTAAGCACTGTCAACAACAAAGGTGAA
ATACTTCGTTTATCTAACTCAAAATTTATAAGATTTATTTTTAATGACTT
ATACATTTACACCCCCTTCTCACAGACTCGTTAGTAATTTTTCAGCCAAC
AGGGATAAAAATAACGTACTGAAACTCAATGTGGATTGATACTCACATAG
TTTTTTGGCTGGGGATTTCAATTCTTTTGTTTTCAAGCCATAAAATGCCA
TAAAATTCAGAGGGGATGGGAAAAATGGTAAATATTTCACAGTGAGGATT
GATTTGTTTGATTATTTTCAGCGGGGACAAAAATTGGAGGATAATTTCTC
ACCGGGGACGATATTTTGGCCAATTTTTCCAGTGGGAAGGGGTCCCAGTG
GGTCGATGAAGAGGGGGTGTACATTTATGCTGTCTCCAGTTGCGTTAGTT
GACAAGTCTGAAAAACCATAGTCCTTATAAAAATCCACGGTTTGGGAATC
CTTTTCCAACCCCTTTTCACAGACCCGTCAGGATTTTTCAGCCAGTGTGG
GTGAAATTAACGGATTCAAACGCAATTGAGATTGATGTTCCTATGTTTTT
TTTTTATGGCTGGAGGTTTGAGTTCCATTTTCGTTGTCTTCAAGGCATAT
AATTCAGTGGAGATGGAATAAAGCACAATATTTTTTAGTGAGGGTTTGTT
TATTTGATAATTACTAGTGGCAACGAAAATTGGGGTATAATTTTCCANTT
GAGTTCTACTAAAAAGTCTTATTTCATCGGGCGAGCTTAGAATTTCTTTT
GATACATTTTATAAAAGAAATCAAAAGACTTTAACGACCAATTACCGAGA
CATTCAACTCCTGTTTTTCTTTATACCTCCATGCTTTAACAAACTGTTCA
AATCAATCTTTTAACTATTGTTTTACACAAAGAAAAAGTCAACAAAATAT
TATAAGAATCGGCTTCCAGACCAAGGTTCTTCATACAGACTATAGAAAAA
CTTACTTACAAAGACCTAAAAGGGCATTTTTAACTTTCTCGTGAAAAACT
GAAAACTGTGTTCTACAAAACATCAGTGCTAGGGAAGAAAACCATAGATA
GCGTACTTTCAACACAAAAAGTTTCAGCCTCAAATTCTTNGATGGAATAA
AGCACAATATTTTTTAGTGAGGGTTTGTTTATTTGATAATTACTAGTGGC
AACGAAAATTGGGGTATAATTTTCCACTGGGAACGGTATTTTGGCTAATC
TTTCCAGTCAGAGGGGGTCCCACCGGTTCTGTGAGAAGTAGGTGTATCTT
ATCATTGGATTGCTTATAAAATGGTTTGTTTTGATCACTTTCATCATGTG
AACAATCCAAAGAAGAGTAGTTAGAGGGACATAAAAGTAGTGACGAAATT
TGTAAACAAACTGTATGCAGCGGGAATAAAATCAAAATAAATGTCAAAAT
TAAAAAAAAAAAATATGGCTGATTTTGATTGTTTCAATTGTTTTACAAGT
TTGTTTTGGACACGCGATTTTAATTGTTCTCTTTAATGACACGTGGTTCG
CGCTATGTTTTTTACTACTTTTACGTCCCTTTAACCATGGAGGNATAGAG
GGTATATTTTCTTGTAGGTTTAAAAGGGTATCCCTGGTAAAAGTGTTATT
CTTTTTCAGTTGAGTATGGCTATGTTAAAATGGTATCACACGACAATCAC
ATTCTCAATGTGACAGCAATCAACATATCATACCACAAAACTTCCCAAGA
ATGCATTCGAGCTTGTCTCAACTTTACAGATTGTTGGAGCATCAATTTGA
AGGAACAGCCAAATAATGAGATTTACGAATGTCATATTTTGGATACTGAT
CGATTTCGAAACGCGTCAAATTTTGTCTCTTCCTCTACAGGAAATTCTCA
TTTTTCACTTGATGTGAGTAAATAATAAATTATCAAATTCGTCCCCAGTT
TCTTAAATTACTTATATAGTCTTTTTGATTGTCTTAACCTCCATCAGTTC
AGTAAAAAAAAAAAAAGTAAAAGAATTTTATAATTTGTGACAGGGGATGA
CTCAAAGTAAATCACCTTTTATAGAAGAACCGAAATTCCACCGGGGTAAT
AACAAAGATTTTTATCGAATTTTTTTGGAAGTTTTGACTACTTTATGCAA
ATATGTCGACATTTCCTAACTTGATGGGAACAGACAGTCAGTCATCTTCT
TCGTGAAAACTCTCTCCATGTCATTTTTTATAGCATGATTGTGAATGGGA
GGAGACATGCATCAACCCAAACAAAAAATGTATTCCAAACTACTCTGATG
GTTCTTATGAATGTGTTTGCGAGCCTATTGGTAAATACGATATTCATTGC
ACAAGTAAGTATTTTCAATAAGATAAAATGATTTAAGAGTATAAGACTCC
GAAACTCAAAATTGTTTTGACAATTCTAAGATGAACAGCAAGATTCAGTA
AAGAACAAATTCATTTCAATTTTTGAGAGAAGCACTCTCCCATTTTACTT
TTACAGGATTAGTTTTGTGTGCTTTGACTCTAGATGATGTACCAGTTGTC
ATGGATACATCGGAAACGGGGAGATTGGAAGACTTCAGCCTCCCCACTTT
TAAGCAAATGAGATTTTTTCCTCAAATTCCTAGCAAGTTTTATCTTATTT
TGAGCCTCCAGCCTCCCCACTTTTACGGTTGTTCCGCCGGGCCTGTATAG
GATAGGCTTTCCATAACAAATGGTATAAGATCTTACCAATACAAGGAAAC
CATAATTCTCTGAAATCAATCTGTGGAGACAAACTCTAAGAATTCTATCG
CGAATGTCTCAATCACAATAATATCCAAAGAATCGAAGGTGAAGAGCACA
TTGGGCTCTTCCAGAAAAAATCCGTTCATGGGGGGTGGAGGATGAATTGT
CCAGGGGTAGTGAAAAAATACCAAACAATTGCAATGTCCAGGGGGTAAAT
TCCAATGTCCAGGGGTAATTTTTTGTGTCCACGGGGTTGATTTGATGTTT
GTCCAGGGGTATAAACCGTGTCCAGGGGGTTAAAAATCAAAATGTCCAGG
GGTAATTCATGAAAAAAATAATATATCCTCCACCCCCCATGAACGAATTT
TTTCTGGAAGAGCCCATTTCATCATGTATTAAAGTCCAAATAGATTATAA
AATTTTCGATTTACAGTTATTTAATGGATTTCCAAGTATATAATGTGTAT
ATTATGGCCTGAGATTACTTGATTTCACTGAATCTTTCCTATGTTCCCTA
TTCGTGATTTGATTGGTACGGTTTTTATCCAAGATCCTGCATGATTGCTA
TGGTTACTTTTGTTGTGCGTTGAGTGAAATGGGTTTGATTGAAGGGTTTC
AAGGAAATAGAGTCATAACAGGTTTACCTTTCGCCGTCCAACATCTTCCC
TGTGTATCCCAGGCTTTATTTACGTCACTGATGGAAATAGAGGAAAAGAA
GCTCGGGGATGTCATACAAAGACTATTTTACTCGGTTTTCACAGCTCATA
ATCCAACCCTTACTCCGTGTATCTCAGGCTTTATTTATATTCCTGATAGA
TGCTAGAGCATGCGTATATTATCTGACACTATCAGTAAACATCAATAAGC
CGATAACTACGCAGTTTGTTCACGATCACCAATATATATTTCTTTTCAGA
CAGAAACATTGCATTTCAAAGACCAGTCAGTTTATCGAGCCTAAAATCGG
ATTCTGGGAAACCCGCGTTTGTTACCGATGGTTATAAAGGAGAAATGTGT
GATAATTTCTCAACCAATCTTGTCCACTCGAAAATGGGACATATGGAAAT
GTGGCTGAGAATTGATTTGGGTGGAATGAAACAAATTAAATTTATTGATA
TTTTCGATCGTACAATAGGAGCACCTTATCATCAACGACTTGCTTCTACA
GATATTATTGTGTATGGTCAGAATCCTATGGATAACCGCCAGCTTTGCAG
TACTATAACATTGCAAGATACTGCAAATGGTGATAAGGTTTTTAAAGTTT
GTAACAAGGTTTTGACTGGGAGTGGAGTTGAGTTATACAAGGCCCCCAAT
GGATGGCAAATGATACATCTTTGTGAAATAGCTGTGTACGGACCTACAAA
ATAAACTTTTACTATATCATACAGGATTTTTTGCAAAATAGTATACTGAA
AAAAGTAAGGCAATTTTTAGAAAGAGAAAAATATCAAGTCATAAATGCAC
AAAGGTATGACTTTTCAACACTGGAGACCAATTAAGTTCTCCTAAAATAA
GTTAACTCAAAACTTTTGTTGATTTAAAAGATTAAAAAGTTTAAAAGATA
AAATCAATTTAAGAAAAAGTTTTCTTCGCTTTATACTGCTTAAAAAAATA
CATTCAATTAGCCTTTCATTAACGAGAAATTTGACTGACAAGCTGCATAG
GTTTGACCATAAAAATGGGAAATTTCATCAAAGTGACAAAAAAGAGAGCT
GTCAATCAAAACTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059590-exon-scaffold_329-1575043694:363956..364200 | TCONS_00059590-exon-scaffold_329-1575043694:363956..364200 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1575043694:362088..362221 | TCONS_00059590-exon-scaffold_329-1575043694:362088..362221 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1575043694:361647..361767 | TCONS_00059590-exon-scaffold_329-1575043694:361647..361767 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1575043694:359534..360351 | TCONS_00059590-exon-scaffold_329-1575043694:359534..360351 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1510915933:363956..364200 | TCONS_00059590-exon-scaffold_329-1510915933:363956..364200 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1510915933:362088..362221 | TCONS_00059590-exon-scaffold_329-1510915933:362088..362221 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1510915933:361647..361767 | TCONS_00059590-exon-scaffold_329-1510915933:361647..361767 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1510915933:359534..360351 | TCONS_00059590-exon-scaffold_329-1510915933:359534..360351 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1491911889:363956..364200 | TCONS_00059590-exon-scaffold_329-1491911889:363956..364200 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1491911889:362088..362221 | TCONS_00059590-exon-scaffold_329-1491911889:362088..362221 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1491911889:361647..361767 | TCONS_00059590-exon-scaffold_329-1491911889:361647..361767 | Clytia hemisphaerica | exon |
| TCONS_00059590-exon-scaffold_329-1491911889:359534..360351 | TCONS_00059590-exon-scaffold_329-1491911889:359534..360351 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:359534..364200 - |
Blast
The following BLAST results are available for this feature:
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