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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059521 ID=TCONS_00059521|Name=TCONS_00059521|organism=Clytia hemisphaerica|type=transcript|length=1377bp
caaaacacCTTGAAAAACAGAACCATGGCTATCAATTTACGGGTGTGTTT
TTAATATAACGGTTACACGGTGTGTTTACACGTTGCAGTTTCACCAGAAA
ACCCCAAAGATCATATATTTGTGGTTATAAAAGAGTCCAAAAGTAGATCT
TATTGTTCACCGTTCTGTTATAAAAGCCCATCAGATTTGGAGTAAAATCA
TTGCAGTTAGTTTTTGAGACCTTCAAAGAAGATCTACAAAGAAACTCAAC
AATCATgaagaccactttcgttttcgttacTTTAGCTTTGGCATATGCCT
CAGCTTTGACATTCGGCGATGCTGaTGGAAAATTGACCTGTGGATCGAAC
AGCATGACTATTACTTTAGACAAAGATAAATTCGATCAACACGGTCGTCA
ATTCAGACTTCACTTCAAAGGAGCCACCGACCCAGCCTGTACTGTCAAAA
GCGATGCCGGAGCTGATGGAGCCTTAACAATCACCTCAAATTACAATGCT
TGTGGAATCGTTCTTGCTGTCGCTGAAGAAGTCTCCTACAGCCAAACTGT
CTTGGTTACTTATGGAAAGACACCAAACAGCTTTGTTCAACGTGAAGAAG
TCATCTCTTTCGAAGTCTCCTGCAACGTTGATGCTGCAGTTGCAGTTGGA
CTTGCTGGAGCTGGACACGTCAATGTCACTAGCTTGGAAGAGCAAACTAT
TTCCAAATCCGAAGCCAGTGAATTTGACATCAAATTGGTCAGAACCACCG
ACGGTTCTTTCAGCTCTGAAGATTCATCTTCACAAATGCGATTGGGAGAT
CAAATGTATTTCAAACTTGAATTGAACACCATCCGTGATGACTTGAAAAT
CTCACCACAAACTTGTTACGCTACCAGCACCGCTGACTCcgctgaaaaat
atttcctcgtTCAAGATGGATGCGCAAATGCTGCTGACGGAACCGTCAAA
GTTACCGAAACTGACGACAAGACAGTTTACGAATGGGAAAATGAAGCTTT
CCGATTTTTCGGAGCATCTGATGCTGTTTACATCACATGTGAAGTCACCG
TTTGCGAATCATCCAATGGCTCCACAGAATGCAACCGATGTGAAGCCACA
ACCCGTCGACGACGTGCTCTCTCTAAATCTGCCACCTACCACTCCAAAGC
TTACAGCAAAATCTTCACACTTGCTTAGATTTGATGCTACTTTATAAAGC
TTAGAATAACCCCATTTGTAATGcgttttgaatatttttcaacttattcT
AGGGCTAAtattatgatttatttttcctTATAAATTTTCGTTGCAATAAT
TTTGTATTGcctttctatgtttgttagaATATCTTTTATTGATTGAAgat
tatcaaaaatgaaaatgataacaTCTT Run BLAST on NCBI transcript from alignment at scaffold_329:455004..457180+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059521 ID=TCONS_00059521|Name=TCONS_00059521|organism=Clytia hemisphaerica|type=transcript|length=2177bp|location=Sequence derived from alignment at scaffold_329:455004..457180+ (Clytia hemisphaerica)
caaaacacCTTGAAAAACAGAACCATGGCTATCAATTTACGGGTGTGTTT
TTAATATAACGGTTACACGGTGTGTTTACACGTTGCAGTTTCACCAGAAA
ACCCCAAAGATCATATATTTGTGGTTATAAAAGAGTCCAAAAGTAGATCT
TATTGTTCACCGTTCTGTTATAAAAGCCCATCAGATTTGGAGTAAAATCA
TTGCAGTTAGTTTTTGAGACCTTCAAAGAAGATCTACAAAGAAACTCAAC
AATCATgaagaccactttcgttttcgttacTTTAGCTTTGGCATATGCCT
CAGCTTTGACATTCGGCGATGCTGGTAGGTTTAAATTGTTTGTGAGACAG
TTACTCATGTtttaacccagctggcacacaacttCGTTTCAACcgtttaa
cgttagatgaacgttgaaacaacgttgtgtgtcagatAGGAATAGTCTTG
TCATCATTATGCACTACAAATATTTTAGTGTTATCTTATCTACTGTAAGG
TAGAACTGTTCCTTATTCTCAGATTGATTGTTATGTAAATCAGTATCGCC
AGACTTTTAGATCCTTTTTTTCTTAAGTTTACCTGTTAAATTCTACGCTA
CAAgagtttttacttttctttgatgctaattttatcttattttagaTGGA
AAATTGACCTGTGGATCGAACAGCATGACTATTACTTTAGACAAAGATAA
ATTCGATCAACACGGTCGTCAATTCAGACTTCACTTCAAAGGAGCCACCG
ACCCAGCCTGTACTGTCAAAAGCGATGCCGGAGCTGATGGAGCCTTAACA
ATCACCTCAAATTACAATGCTTGTGGAATCGTTCTTGCTGTCGCTGAAGA
AGTCTCCTACAGCCAAACTGTCTTGGTTACTTATGGAAAGACACCAAACA
GCTTTGTTCAACGTGAAGAAGTCATCTCTTTCGAAGTCTCCTGCAACGTT
GATGCTGCAGTTGCAGTTGGACTTGCTGGAGCTGGACACGTCAATGTCAC
TAGCTTGGAAGAGCAAACTATTTCCAAATGTAAGCAACCACAGCTTTTAT
CTATTACATTGAAACAAAAGGtttttagctcattttaaagtttaaaattg
aaCTTTTGATGTACAAGTATGGTTTTAAATTGTATGCGAAGTTTTTAAGG
GGAGTATGTCCTACTTTTCATCTTACAAACTTTTTGAACACTTTAGCCGA
AGCCAGTGAATTTGACATCAAATTGGTCAGAACCACCGACGGTTCTTTCA
GCTCTGAAGATTCATCTTCACAAATGCGATTGGGAGATCAAATGTATTTC
AAACTTGAATTGAACACCATCCGTGATGACTTGAAAATCTCACCACAAAC
TTGTTACGCTACCAGCACCGCTGACTCcgctgaaaaatatttcctcgtTC
AAGATGGGTAAGAATTTCAGCACACACCTAATTATCAATAATCTAATTGA
GGATTTTTGATTTCTGTGCACAATCGAACGTTATTTGCCTGTCATTAGTT
TTGATTACTAACCagattttaaagtaaaaaatgctaaaagcTTTGAAAGA
ACTTTTCAGAATTGCCGAAAAATGATATGTTATCCGCGTCAAGATTACAA
AGTAAATTTGTAGCATcgaattttcaacaattttgagAAAGACGAacttt
atcttttatttttgagaagattaAGATTAAAGATTAAGATTTTAACATTC
TTCGTCACTTTTCTTTCAGATGCGCAAATGCTGCTGACGGAACCGTCAAA
GTTACCGAAACTGACGACAAGACAGTTTACGAATGGGAAAATGAAGCTTT
CCGATTTTTCGGAGCATCTGATGCTGTTTACATCACATGTGAAGTCACCG
TTTGCGAATCATCCAATGGCTCCACAGAATGCAACCGATGTGAAGCCACA
ACCCGTCGACGACGTGCTCTCTCTAAATCTGCCACCTACCACTCCAAAGC
TTACAGCAAAATCTTCACACTTGCTTAGATTTGATGCTACTTTATAAAGC
TTAGAATAACCCCATTTGTAATGcgttttgaatatttttcaacttattcT
AGGGCTAAtattatgatttatttttcctTATAAATTTTCGTTGCAATAAT
TTTGTATTGcctttctatgtttgttagaATATCTTTTATTGATTGAAgat
tatcaaaaatgaaaatgataacaTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059521-exon-scaffold_329-1491911889:455004..455327 | TCONS_00059521-exon-scaffold_329-1491911889:455004..455327 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1510915933:455004..455327 | TCONS_00059521-exon-scaffold_329-1510915933:455004..455327 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1575043694:455004..455327 | TCONS_00059521-exon-scaffold_329-1575043694:455004..455327 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1491911889:455649..456032 | TCONS_00059521-exon-scaffold_329-1491911889:455649..456032 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1510915933:455649..456032 | TCONS_00059521-exon-scaffold_329-1510915933:455649..456032 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1575043694:455649..456032 | TCONS_00059521-exon-scaffold_329-1575043694:455649..456032 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1491911889:456200..456410 | TCONS_00059521-exon-scaffold_329-1491911889:456200..456410 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1510915933:456200..456410 | TCONS_00059521-exon-scaffold_329-1510915933:456200..456410 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1575043694:456200..456410 | TCONS_00059521-exon-scaffold_329-1575043694:456200..456410 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1491911889:456723..457180 | TCONS_00059521-exon-scaffold_329-1491911889:456723..457180 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1510915933:456723..457180 | TCONS_00059521-exon-scaffold_329-1510915933:456723..457180 | Clytia hemisphaerica | exon |
| TCONS_00059521-exon-scaffold_329-1575043694:456723..457180 | TCONS_00059521-exon-scaffold_329-1575043694:456723..457180 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:455004..457180 + |
Blast
The following BLAST results are available for this feature:
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