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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059524 ID=TCONS_00059524|Name=TCONS_00059524|organism=Clytia hemisphaerica|type=transcript|length=562bp
AGTTTtgataaaaacatgaaatatatCTCCTTTACCTAATTTGATAGCTT
TAAAGTTATACTTCTTaacaaaataaatcagaaaCAGACTAGATTGGAta
gttgttttgaaaaatgaattccTTTATATTGGTTGTTTTGATGACAATAT
GTGTACATTGCTCCATCAGCCTCAAATTCACAGCTCAGGATATCCAATCT
TTAGGATGTTTTAAAGATAGTATGCTTCTTGAAATATCTGCTGAAAAGTT
GGGAATTGAAAATCGAGAGTTTCAAATGCACTTTAATGGATATTTTGATG
ACCAAAAATGCTCTATCGAATCTGGATCAAACATCAATGACTTTGATTAT
TATTTCCTTGCTAATTTTTACAAAGATTGTGGTATTCAAGAATCTGTAAT
GGATACTAAAACTGTTTATAATCAAACTGTATGTATAACATTTGACAGAG
ATCTTAAATCACAGATTGCCTTTGATTTTGAATGTGTTTTGAAGAAGAGA
TTGTAACTTCCATTAAACTAACTTTTCAGCAATTCCTGTATTATAtaata
acacgcatgcgt Run BLAST on NCBI protein sequence of TCONS_00059524-protein >TCONS_00059524-protein ID=TCONS_00059524-protein|Name=TCONS_00059524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MNSFILVVLMTICVHCSISLKFTAQDIQSLGCFKDSMLLEISAEKLGIEN
REFQMHFNGYFDDQKCSIESGSNINDFDYYFLANFYKDCGIQESVMDTKT
VYNQTVCITFDRDLKSQIAFDFECVLKKRL Run BLAST on NCBI transcript from alignment at scaffold_329:459776..461058+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059524 ID=TCONS_00059524|Name=TCONS_00059524|organism=Clytia hemisphaerica|type=transcript|length=1283bp|location=Sequence derived from alignment at scaffold_329:459776..461058+ (Clytia hemisphaerica)
AGTTTtgataaaaacatgaaatatatCTCCTTTACCTAATTTGATAGCTT
TAAAGTTATACTTCTTaacaaaataaatcagaaaCAGACTAGATTGGAta
gttgttttgaaaaatgaattccTTTATATTGGTTGTTTTGATGACAATAT
GTGTACATTGCTCCATCAGCCTCAAATTCACAGCTCAGGGTAAGATCATA
ACTACAcccccaacctcgttccctgcgcattatcagcttttttatgctta
ctgatagcgctagatgaTACCCTgacattggctggttttcgaacgcgcaa
gattacgtaattcaaaaacaaaacgtcagatttcattcgttcctgggttt
gaaaccattgcattgcagtgtaactttgtaacNNttgagaagttccccct
ctgagagggggaactcgcatcagccaacaccagggtattctctggcttca
atcagtaacgtaaataaagcctgggatacacggggacgaggttgctaCAC
CCCCTGTTTATCAAATCAAGCAATGTTCCATTTATAATAAATTTGGCCTA
GAATACCCGTTTTACCAGACATATTCTAAGATCAACACAACATTTTTAGA
AATTGTTGTAAAACTGTTCGAAAAAGTAGGAGTTTTTCGATCAGAAATAG
AGATTTTGAGagattttgagccaaaaaagtgttcccgtttcatatcagac
acatatttcaccAGGCCAGTGCCTGtctattgttatgttatgctgatata
agcaagtaatgtttttttctttctgaccaatcctGTTCCACacccgtgtc
aatccaatgtgaaaaagcttgtgaattaaaattgatgagtaagcaaacga
tatcactcttatttaaaagcaaaacctttaataatTCTTCAAACGAATTC
TTTCTTTTAGATATCCAATCTTTAGGATGTTTTAAAGATAGTATGCTTCT
TGAAATATCTGCTGAAAAGTTGGGAATTGAAAATCGAGAGTTTCAAATGC
ACTTTAATGGATATTTTGATGACCAAAAATGCTCTATCGAATCTGGATCA
AACATCAATGACTTTGATTATTATTTCCTTGCTAATTTTTACAAAGATTG
TGGTATTCAAGAATCTGTAATGGATACTAAAACTGTTTATAATCAAACTG
TATGTATAACATTTGACAGAGATCTTAAATCACAGATTGCCTTTGATTTT
GAATGTGTTTTGAAGAAGAGATTGTAACTTCCATTAAACTAACTTTTCAG
CAATTCCTGTATTATAtaataacacgcatgcgt Coding sequence (CDS) from alignment at scaffold_329:459776..461058+ >TCONS_00059524 ID=TCONS_00059524|Name=TCONS_00059524|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_329:459776..461058+ (Clytia hemisphaerica)
atgaattccTTTATATTGGTTGTTTTGATGACAATATGTGTACATTGCTC
CATCAGCCTCAAATTCACAGCTCAGGATATCCAATCTTTAGGATGTTTTA
AAGATAGTATGCTTCTTGAAATATCTGCTGAAAAGTTGGGAATTGAAAAT
CGAGAGTTTCAAATGCACTTTAATGGATATTTTGATGACCAAAAATGCTC
TATCGAATCTGGATCAAACATCAATGACTTTGATTATTATTTCCTTGCTA
ATTTTTACAAAGATTGTGGTATTCAAGAATCTGTAATGGATACTAAAACT
GTTTATAATCAAACTGTATGTATAACATTTGACAGAGATCTTAAATCACA
GATTGCCTTTGATTTTGAATGTGTTTTGAAGAAGAGATTGTAAatgaatt
ccTTTATATTGGTTGTTTTGATGACAATATGTGTACATTGCTCCATCAGC
CTCAAATTCACAGCTCAGGATATCCAATCTTTAGGATGTTTTAAAGATAG
TATGCTTCTTGAAATATCTGCTGAAAAGTTGGGAATTGAAAATCGAGAGT
TTCAAATGCACTTTAATGGATATTTTGATGACCAAAAATGCTCTATCGAA
TCTGGATCAAACATCAATGACTTTGATTATTATTTCCTTGCTAATTTTTA
CAAAGATTGTGGTATTCAAGAATCTGTAATGGATACTAAAACTGTTTATA
ATCAAACTGTATGTATAACATTTGACAGAGATCTTAAATCACAGATTGCC
TTTGATTTTGAATGTGTTTTGAAGAAGAGATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059524-exon-scaffold_329-1491911889:459776..459964 | TCONS_00059524-exon-scaffold_329-1491911889:459776..459964 | Clytia hemisphaerica | exon |
| TCONS_00059524-exon-scaffold_329-1510915933:459776..459964 | TCONS_00059524-exon-scaffold_329-1510915933:459776..459964 | Clytia hemisphaerica | exon |
| TCONS_00059524-exon-scaffold_329-1575043694:459776..459964 | TCONS_00059524-exon-scaffold_329-1575043694:459776..459964 | Clytia hemisphaerica | exon |
| TCONS_00059524-exon-scaffold_329-1491911889:460686..461058 | TCONS_00059524-exon-scaffold_329-1491911889:460686..461058 | Clytia hemisphaerica | exon |
| TCONS_00059524-exon-scaffold_329-1510915933:460686..461058 | TCONS_00059524-exon-scaffold_329-1510915933:460686..461058 | Clytia hemisphaerica | exon |
| TCONS_00059524-exon-scaffold_329-1575043694:460686..461058 | TCONS_00059524-exon-scaffold_329-1575043694:460686..461058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_329 | supercontig | scaffold_329:459776..461058 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001507 | ZP_dom |
Blast
The following BLAST results are available for this feature:
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