TCONS_00061678 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061678
Unique NameTCONS_00061678
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1972

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061678 ID=TCONS_00061678|Name=TCONS_00061678|organism=Clytia hemisphaerica|type=transcript|length=1972bp
GCTTCATCAGCAAagaaagaagaaggagctgatgAACCTCAGAATACAGA
ATTCGATGTTATTTACAAAGTCAATGATAATCCACCATGGTATCTGGCCA
TCGTGCTCGGTTTTCAGCAATACATGACAATGTTTGGATCAACTATTGCT
GTACCCTTCATCCTTGCTGGTCCTTTATGTATCGCTGACAACAATCTTGC
CAAGAGTGAACTCATCAGTACCATCTTCCTTGTCTCTGGTATCGCAACTC
TCATACAATCATGTCTTGGAACAAGATTGCCCATCGTTCAAGGAGCAACA
TTTTCGTTCATCGGGCCTACCATTGCAATTTTAAACCTCCCGGAATACAA
ATGTCCAACTGCTGTTAATGGAACTGTCCCGGACTATGATTGGAAGATCG
GCATGCGAGAGATTCAAGGAGCAATAGCAGTGTCATCTTTATTTCAAGTA
TTTGTGGGCTGTACAGGTATCATAGGGTTTGTGATGAGATTCATTGGTCC
TTTGACGGTCGCTCCCACCATCGCTTTGGTTGGATTGGCCTTGTTTGGTG
CTGCTGGAAGTTTTGCAAGTGAACAGTGGGGAATCGCTGCATTGACAGTA
TTTTGTATTGCTTTATTCTCGCaagttttgggaaaaaaatttgccGTCTT
CAGATTGTTTCCGGTCATTTTAGCAATTTTGATTTCATGGGCATTATCGG
GGATCATCACAGCTGCAGGAGGATACAAAGAAGGTTCAGAAGCAAGGACC
GATCACAATCTTGAAGTTCTTAATCAAGCCAAATGGATTCGCGTACCTTA
TCCAGGACAATGGGGAACACCAACGGTCCACGTTGCTGGTGTCTTTGGAA
TGCTTGCAGGTGTTTTTGCTTCCATGATCGAATCGATCGGTGATTACTAC
GCATGCGCTAGACTGTCAGGTGCGCCTCCTCCACCAAAACATGCAGTCAA
TAGAGGAATCTTCTTGGAagGCATTTCATGTGTATTGGCTGGTCTATTTG
GTTCAGGGAATGGCACAACTTCTTACAGTGAAAATATTGCTGCAATCGGT
GTAACCAAGGTTGCGAGTAGACGTGTCATTCAAATTGGCGCCATTTTCAT
GATTATACTTTCAATCCTTGGTAAATTTGGTGCAGTGTTTACATTGATCC
CTAAACCTGTTATTGGAGGGATGTTTTGGTGTTTGTTTGGTCTGATCGTC
GCCGTAGGATTGTCTTCGTTACAATTTGTCAACTTGAACGATTCTAGAAA
TCTCTTTGTTCTTGGCTTCTCATTCTTCAATGGAATGGTCGTACCATCAT
GGATTAGTGCCAACCCACAAGCTATTGATACTGGCGTAACAGAACTCGAT
CAAATCATAGGCGTCCTTCTTGGAACCAACATGGCGGTCGGTGGAATCAC
TGCATGTCTTCTAGATAACATTTTACCGGGATCGAAAAAAGATCGTGGTA
TCGAAGCATGGCGTGACAACGAGGCTTCCGCAGAAGAGAACTCTGCCACG
TACGATTTACCTTATATACAAAAATATCTAGATCGTACTTCTTGGATCCG
GTATGTTCCATTTTTACCGTATAACGGAAATCGTTCCGGAACTGAAcaaa
acaatcaatataacatgCAAGAAGTGGCTTGAAGGAAAATTCCATTTGAT
GGCGAAAATAACGATGGATGATAGATACGTTTTCTAAAAGCAACACTAAG
CCATAGTTAGCTCATTTACAATTTTATTCTACACGCGAGATTTCTCTCTG
TACTGCCATTGAAATCATCGAATTTAAAACAGATTTTACGTCTGTACCGC
TATTATTTTCCAGACAAAATGTATATATAGTTTTTGCTCAAATACAATAA
ATTATGTGTATCACTTAACTCGTTAACTCTATAAATCCGAAGTAAAAAAG
TGATATATCATTCTAAATTTTGTACCTTATATGTTTTAGGATGTATTATA
TATCTAGGAAAGAGAAATcaga
Run BLAST on NCBI

transcript from alignment at scaffold_36:1025604..1036713-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061678 ID=TCONS_00061678|Name=TCONS_00061678|organism=Clytia hemisphaerica|type=transcript|length=11110bp|location=Sequence derived from alignment at scaffold_36:1025604..1036713- (Clytia hemisphaerica)
GCTTCATCAGCAAAGAAAGAAGAAGGAGCTGATGAACCTCAGAATACAGA
ATTCGATGTTATTTACAAAGTCAATGATAATCCACCATGGTATCTGGCCA
TCGTGCTCGGTTTTCAGGTTCGAAATCTTATGCTTTTTAATAGGCCATCT
TACAGTTTCAAAGCGTAATGGATAATCAGGACCACTGCGCACTAATGAGG
ATCTACTATTGGTCAAAAGTTTTGAAAAATGTTGAAGATTTTTGCGTCCA
GCCAACTGGAAGTCGTTACTAGAGCGTAATCAGTCCTGATTACCCATGAT
TCATTTCGACTGTGAAATGGCCTATTGGATTGAAACCTTTAATGGCTGAT
CCGGCGTTGTTCGAATCGACCATACGAAGATGCACTGTCCTCCCGAAATG
TTCGAGTATAGTTTCTACAATCAGCTCAATGTGCCACGAGCACGAATTGA
CATAGTCATTTCAACGCAGTGAATACCTTATCATCGTCTAGTGACTGCTA
TCCTTCCGTCGTCCATCGAAGGAGCTCTCATCTCTCATCTCTTTCATCCA
GACCCATAATTGAAAAGAATGGTTTCTATTTTAGCGATTCATGATTCTTA
AAATTCCAGAGAAAATTAATTCACTTTTTCCGAACAACATGACTTTTCTT
TTACAATCAATGTGAAAGGAATCTCATCAACAGCGGCTCTAGAGCATGTA
GGTGTACCAAAAGACGAACCCGGAACCCAGAACCATTTGTAGCGAATCTT
GTACCCAAGAACCATTTGCAATTTTCGATTTTACTAATGGATGTGATACA
GCGATTAACTTTTCGTGAGAACTATCAGAATCATAAAGCGAACTAAAGAG
ACTGGCTTCGATTTTGTCAAAAAAATTGATAATTTATTTATCTCTTTCGT
CCATAGCAATACATGACAATGTTTGGATCAACTATTGCTGTACCCTTCAT
CCTTGCTGGTCCTTTATGTATCGCTGACAACAATCTTGCCAAGAGTGAAC
TCATCAGTACCATCTTCCTTGTCTCTGGTATCGCAACTCTCATACAATCA
TGTCTTGGAACAAGGTAACAACGTCTTAGCAACATCTATATGACGTCCAT
AGACATCCAAATAACGTTTTATGAACATTCAAACAATGTCCCGTATCAGG
CCCGGTGGAAGCGAGGAGACTGCGGAGATTTCAGTCTCCCCACTTTTGAG
CAAATGAGATTTTTTTCTCAAATCCGTAGCGGATTTTATTTCATTTTGAG
GTTTCAGCCATCCCACTGTTACGGTTGTTCCGCCGGGCCTGGTATCATTT
CATCCATAAACAATCGTTCCCAGCGGCGAAAATAGTTTCATTGCGGAAAG
CTAACTCCTACAAAAAGTGAAATGCGGCACTAGAACTCGGAAGAATGCCA
ACTGGATTTCAAGGCTTTTTGTATCAAAAAGATTTCCATCCTCACTGGAA
TTTAGCTTTCTCATTTTGTCACTATTTCCAAAAAAACTCTCAATGGGTCA
TCGAGATAGGGGTGTGTTCGAGTAGAAACGCTGTATACCTGTCGACTCAA
AATTTGTTCAATGTTTTACGAATTGAGAATGAGGGGTGCTCTGAGCAATG
GACTGTTGACGAAGGCCTCCAAGTTGTCTTATCGTCTAAGTATGATAATA
TGTCTATTTTTCTCTTTCTATAGATTGCCCATCGTTCAAGGAGCAACATT
TTCGTTCATCGGGCCTACCATTGCAATTTTAAACCTCCCGGAATACAAAT
GTCCAACTGCTGTTAATGGAACTGTCCCGGGTGAGTGTTAAAGTATTAGC
CCAGTGGGCAGCGTGATGGGCCTTTTAAAACACAACTGGTCGAAAAAATT
TGACTTTGTCGGGGCTTATGCGCGCAATTATCAATTAAAGAGTCCAGGCT
AAAATCGAATTATCCATTGAGTTTCAAGCCCGAAGGGCTAGAGGCAAGAC
TCCTGGATGGAAAATGAAACCACTTATTTCCCATCCAGAGAGCCCGCGCG
CGTAGTCTTTACACAAACGCTGGATTGAAACTAAAATCTATCGCTAGATT
TCAAAAAATGTAGTCTTCCAAAACAAACCGCTAGATACAATCCGTGGTCA
TGATAACGGCGCGTTCTATACGCGTTTGGGATGGGAAATAAGTGGCTTCA
ATTTCTCTTGCATGAGAAGGGTTAAAGTTTCGCCTCTAGCCCTTCGGGCT
GGAAACTCAATGGAATTATCTGACTTACTATTGTGCGCATGCAAACGAAA
AAAAAATTAATACCTCCGAGTATGGTCAAATCTTTCTAATTTAAAACAGC
TTGAGATGATTATCTCAAAAAAATTAAAGTAATTAATTCTTTATTGCTTG
CTCTACTGGAGCTGCTCTATATATTTTTTTTATTAGAATCTTTCATCACA
AACAATATGGTACAATTCTACAAGGTCTATAATATTTACAATGTTTTTGT
TTTCAAAGCATTTAAATATAGCTTTTATATAGCTTATCAATAATAAAAAA
ATATTTTTGGGTGATCCCTGAGTGAGCAACAAACGAGGAAAAAGAAAGAA
ATAGGAAAACTAGAAGACTACTAAAATAAGATAAAAATAAAATTAAAATC
GATATCGAAAAAATTCACTCCTGTCAATTAAGTTGTATGTCGACTCTGCA
GCGGAAAAATATGTTGATACTGCCAACAGTGGATGTCAGTGGCCGGCTCG
TTCATTCGGTAGACCATTTTCGTTGTCCAATCCAAGCCAAAGGTTTTAAG
GGTATGGTCTGGTCGCCACAGGCTACCTTAAGGGGACCAATTTTGGTGAA
TTAGTTCTGGAATTAGCTGGACTTAAAAAATCGCTTATTTGTCAAAATTT
AAACTTTTAATGATGTTATAAAAAATACCCGTTTTGTCTAAAATACTCAT
CTTTAGGCCAAAAAGCATCAATTTTCCCTGCAAGTCGCCAAAATTAAAAA
ATCGCTGCCTTATCGCCAAGTTTGAAATCCTCTAAGGTTTTTGATAGAAA
AATTAGGTTTTCACCAAAATAGAGCAGCTTAGATTTGATCGTCTGACTTA
AACTGACAGCAACAAGATAAACGGACTCACACACTTACTTGGGTATAAAT
GTTCGATATCTGGTTCCTTTCTGCCATCTTTTTTGAAAGTTATCAGTGGA
AAATTATAAGAGGGTCAAATGTGTGGTTGATGAGGAATTAATTATTGTTA
TATTTCTTTCTTTTAACTTTTAGACTATGATTGGAAGATCGGCATGCGAG
AGGTATCGCTTTTTCACTATTTTATCAAACATTTATTTTCAACCCTCATC
ATCCAGTCAAAGTTGTTGGGGTTGTACAGAAATAATGCGATCTCACCAGC
TTGTAGCCTTCTGTTTATATTCTCTGACGAAAAAAGGTTCCTTTCTCGCA
AAAAATACCAACTCTCAACGAATTTTGTTAAACGGCAAGTTTTATAGGTG
AGACTCACAAAAAGAATTATTAAGGCTGTGCCAACCAGCCTGACTGAAAA
TTATTTCAAAATAATGAAGCAAAATACCCTAACCAAAGAAAACTGGGCAC
ATCTCCAGCTAAAGTTCATGTCACGCACTGTATAGTCCTGCTCAGTGGCA
GATCTGAGAAGATCAAAAGTTTATGACTGAGAGTCTTTATTCCCTTATAA
GGAGTATGGTGAAAAGAAACACTCCCTGTCATAAATCTTGAACACTTTAG
ATTCGCCACAGGTGTACCAAAATGTATCTATTTTTTATAGATTCAAGGAG
CAATAGCAGTGTCATCTTTATTTCAAGTATTTGTGGGCTGTACAGGTATC
ATAGGGTTTGTGATGAGATTCATTGGTCCTTTGACGGTCGCTCCCACCAT
CGCTTTGGTTGGATTGGCCTTGTTTGGTGCTGCTGGAAGTTTTGCAAGTA
AGTGGTTTTTTAGACGATGCGTTAGAGGGATAGTAAACGCGGTAAAATAT
ATACGACTGGAGTTTAAAGCCTAGGCCCGGTGGAAGCAGAAAGGCTGGGG
AGGCTTCAGTCTCCACACTTTTGAGCTAAATAGACTTTTTTTCTCCAATC
CCTGACGAATTCTATCTCATTTTGAGTCTTTAACCCCCTCCACTTTTACG
GTTGTTCCGCCGGACATGCAGCCCTAATTGGTGGTAGATGGAATAGAAAG
AGAGACGGAAGGATAGGATCGTGTTATGAACGACCATGCTGATGGTTTTG
GTTGAAAATTTATTCCGTTGAATATAAAAAGTAAAAAGTAACTGTTTTTG
TCCTAACCTTTTTCGTTCCGATGTCGGAGATACATCAGATATTGACTATA
ATACCTCATGTGTGCAATTCCAATTTTGACAAAATTTTTCGTCAAACTTC
TTCTGAAAAAACGCTAAAATACTTAGAAATGTCAACATATTTTACACCCC
TGTCTCTGTGCCCCAGTGGGTGTAAAACATCCAGTGGGGTGGGATGTGAA
AAATCTGAACTTCACTGGGGTGCAAGATATTTCCCGAAAAGTTGAGTGGG
GTGACCAATTTTTGCTTGATTATCGCTGGGGTGAAGAAAATCTTTCTGAA
AGTTTATTCTGAGGTAGAGTAGCTAGCAGTGCTAGTCAAATGTTAAATTA
TAAAATGTAGCGCGGAGTCGTTGTTACCGCTATCTGAGGCTACTGATAGG
GAATATATTTTCAACCGCGTTGAAACGGTGAGGTATAAGACTTTTAATCA
TAAAAACACGAAACATCATCCATTACTAACAATAGGGCAATATACCTCGA
TCGGGAGACGAATCCCGTTTGCGAGACGTCTCCCGAAGGGGAAACGATTT
TGCAAGAGCGACATTCATTCAACGTCCATACAACGTCAATCTTGAAGTGA
AAAAGTGGGGAAATTGGGGCAAAGGGGAAGCTAAAAGATGGATCAATGGA
AAGATAAATGAATTTATTAACTTTTGACCGAATGATTTTAAAATTGACCA
ACAAAATTTTAAAATATTCTACTGAAACTTGACTGAAAAACGGAAAAACA
TTTTGCTCTTGTCTTTTTATTAAAGATAAAGGACTTTCTTACATATCGGA
TATATTCTAGACCATCTGTTTAGATCATAACTTGCTACTACTTTTGACAA
CGCGGTGATATGGACAATTAGTCTACACAGTTTCGAAAAAATTGAGCCTT
TTTTTGTGCATTTCGTTAATTCAAAAAGTGGATTCCATAAATAAAAGGGG
AGTTTCTAGTGGGGTGAACTTTTGATGTGAGAATTCTACTGGGGTACGTC
AAAAAAAAATTTTGAGTGGGGTATGTGTGAATTCTTCGTATCTTTCAATG
GGGTCATTTTCAGTTACAGTATTCCAGTGGGGTGAGTGATTTATCTACTG
GGGTGAAAAAATGGGCGATTTTTGGGAATATTTTTCACTGGTGTGACGAG
TGGGGTGGATCCCACTGGGTCATAGAGGCAGGGGTGTTATTTTAACCATA
ATTGTGATTTTGGAGATAAAATGATTAAAAATTTCATATTGTCAAAATCC
AATCCTGGTCATGCTTTATATGTTGATCGTTAAGAGCGTGTACTAGGTAG
ATATTTACGAGTTCTTCTTGTTCATATATCTGGGTTACTATTCCTAACAG
AAACACCGCAAGTTGCAAATATATTGAAAGTTTTTAGGATTGTTATTTTT
TTCTTCATTTATAGGTGAACAGTGGGGAATCGCTGCATTGTAAGCTAATA
CTTTTTTGCAGTTTTCATATCTGAAATTTTCTTATAGCTATACAATTCAA
CCAAATTTGATTCCAANTATATTTGAAATTTTCTTATAGCCATACAATTC
AACCAAATTTGATTCCAACCTTTGAATCTCCTATTAAGCAAAAATAGGCT
CCCTTTAAATCTTTACAAGGACTACAATACACTTTGCCATTCAAATATTT
CATAATCGAAGAAAATTCTTGATCACTTAATATTCGAGAGAATGAGAGGT
TGCAGTATATACATCATATATTTTTCTGTTCAATTTTAGGACAGTATTTT
GTATTGCTTTATTCTCGCAAGTTTTGGGAAAAAAATTTGCCGTCTTCAGA
TTGTTTCCGGTAATATATCTATCAGCTCAAATTGTTTTTTTCATCTACTT
TATTTTTGACGTAGAATATATCTAAGATTTAGACCACTGGTCACCTAACA
CTTAACATTTTCTAACGTTCTCTAGAAATAAAAATCCCCCTGTTGATGTG
GGAATCTTGTGACAGCCCACAAACCAGAGAACGGTTGATATAGCGTGTTT
TTCACTGGGCCCTACTGAAAAAAATTTATTTCCTGACTTTAGGCCAGTCA
CTTAATAGCAGTTTTTTCCATGGTAACACATAGATAATGATGAAAATGTA
AACAGTAGTGATTAAACTTTTATGATTGATTTTCAGGTCATTTTAGCAAT
TTTGATTTCATGGGCATTATCGGGGATCATCACAGCTGCAGGAGGATACA
AAGAAGGTTCAGAAGCAAGGACCGATCACAATCTTGAAGTTCTTAATCAA
GCCAAATGGATTCGCGTACCTTATCCAGGTGATTTACCTACAGTTAAACA
AATATTTTATACAAAAAGCACGGAACGGCTTTTATTGATATATAGATTTT
AGAAATTATTGTTACTCTATGTATACTGGAGAATCCGTATACAGATTGCA
GACTCAAACCTTAGCCAGATCTTTAAACAAAGGGTAATCGATGCCTTTCT
GCCAATTTGAGAAATCTGAAATAATGATTCGAAACTAGATTTCACCATTT
TTTGAGCCATCATGATGATACATTCTACATTATTCCATAGCATGATTATA
TTTCCATCCAGCTTAAAAAGTTATTATTATAAACTGGCTTTGAACTGGGA
TTAAGTTAAAATCGGATTACCTAAATTTAACAACTTTACAGACCCACGGG
GGGCATTTAAACCGTTCATGTTTACATTTTGTTTGAAAGGTAACAAGACT
TGGAAAAAACCTACAACAGCACCTCCAATTAAATCCTACACTCTAAAAGG
CTGACACCTCTGATTAGTGGAAAACCCCCCCCCCCCGCCGTTTACTAGTC
AAATTTTCATAAAAAAGTTCTAAAGGGCGGACACTCAATTAGAGGATCCT
CTGATTAGCGGACAAATTTTTTATACCTCTCCAGCGGACATTTAATATCA
AGCTGGCCACCGAAGTTAAGACACACCGTTACAATTCTATATTTTTTGCA
TTTCTAGATATGTAATCTCGACTGAAATTTGATATTCTCGACACCCTGAC
ATGGCTTAATTTCAAAATCGGAGCTCCTAGTTCAAAAGTTTTAAAAGGCA
GACACTTCTAATAGGTGGAATCTAACCCGTTTCTCTGCGGTGGTATCTGC
TAATCAAAAGTTCTAAAATTGTATCTCATCTCTACAGGACAATGGGGAAC
ACCAACGGTCCACGTTGCTGGTGTCTTTGGAATGCTTGCAGGTGTTTTTG
CTTCCATGATCGAATCGATCGGTGATTACTACGCATGCGCTAGACTGTCA
GGTGCGCCTCCTCCACCAAAACATGCAGTCAATAGAGGAATCTTCTTGGA
AGGTAATTTTAATTTTTGTTTAGATGAATTACTCACGGTTTGCGGTTAGT
CATGATTAATTAACAAGTTGCCATTAAGACGCATTAGACAGCTATTGATA
ATCAGGTAAAAACTTTTTGAAATTGGTTCTTGACAAGATGTTCTTACGTT
AGAATTCTTTTGTTTTCTAACTTGAACATCTCGCACTGGAAAAGAGTTGC
GCAAAAAATTTTTTTAAATGAAGAAATTTTGGCGGACAGAAAATTCTTGC
CATATTTTTTAACAACCATTCGCTAAAACAAATTCCCACCAAAGTCATTT
CATTAAATTCTTCCAAATTCGAGCTATATTCATTCATCAGAGCAGGTTAC
TTGTTGAAAGGAAAAAAAGTTGAATGATGTTACATCCAAGGGTGTCAGCA
AAATTAGACTAAAATTCAGGCTGGGGTGTAGAGAAAATTAAACGACATTT
AGAAGGGGGTCAGTTTATTCTTCTTTATTTCTTTATGGAATAACTCATCG
GACATTTACAAAAAACTCTCTTTTCTTAAACTTTATACGTAGTAACTCTT
TCACGGATCACAAGGAGCCCTGTAGTGTTTTTGTTTTTTAAGATATTTTT
ATATATATTTTTTATATTTACATATTTTCTTCATATATTTTCAGGCATTT
CATGTGTATTGGCTGGTCTATTTGGTTCAGGGAATGGCACAACTTCTTAC
AGTGAAAATATTGCTGCAATCGGTGTAACCAAGGTTTGTTAGGTTCTCAA
GTTATATAAAAAGGTTACTGATAAGTTTTTTATAAATGATTTTACTTATT
TTTGTAGGCGTTTTTCGTTTAGTACACCTAACCTTTATAAAACCTTTAGT
TTTCCACATGGAGGAATTGCGTCAAAATGCCTCTGAAGTTTTTGCGTTGG
CATTCTCAAAGAAAAAATTTGAGACGGTTCCTCATTAATTCATTACTAGT
CCCGTCGGAGGCCGACACGCCGCTAATGGTTGAATTTCTATCGACATTGA
CTTTAGGATACCTTGCAAAACATTTTCGACAATAAAATCATACCATAACA
TCCAAAAATTTTGTTTACGAGACTTCCCTACAATACTCTCAAAATGCAGA
CAACATTAGCATCGTTGTAATCATNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTCTGAAAATTGAA
TTCTGTTGAGTTTGTGAAAATCACTAATTTTTTTCAGGTTGCGAGTAGAC
GTGTCATTCAAATTGGCGCCATTTTCATGATTATACTTTCAATCCTTGGT
AAATTTGGTGCAGTGTTTACATTGATCCCTAAACCTGTTATTGGAGGGAT
GTTTTGGTGTTTGTTTGGTCTGATCGTCGCCGTAGGATTGTCTTCGTTAC
AATTTGTCAACTTGAACGATTCTAGAAATCTCTTTGTTCTTGGCTTCTCA
TTCTTCAATGGAATGGTCGTACCATCATGGATTAGTGCCAACCCACAAGC
TATTGATAGTAAGTACAGATTTTTTTATCCTAATACATTAAAGGAAAGGA
TTTTGGTGGCAATTCAATTTGGTGAAATGGTCGAAAAAGTTTTTCAGAGG
AAATTTAATTTTGTGGATGATAAAATGGTAAAATATGACTTACTAAACAG
GCCCTTCAAGGAGAAAAGTATCAGTGTTCAAACATGGTTTACTGATGCTA
AGGGTAATACACTAATCAGAAGGTACTCGGCCCTGTTTAATGTATGCTTT
TTTCGTTTCATCTACTAGCTGGCGTAACAGAACTCGATCAAATCATAGGC
GTCCTTCTTGGAACCAACATGGCGGTCGGTGGAATCACTGCATGTCTTCT
AGATAACATTTTACCGGGATCGAAAAAAGATCGTGGTATCGAAGCATGGC
GTGACAACGAGGCTTCCGCAGAAGAGAACTCTGCCACGTACGATTTACCT
TATATACAAAAATATCTAGATCGTACTTCTTGGATCCGGTATGTTCCATT
TTTACCGTATAACGGAAATCGTTCCGGAACTGAACAAAACAATCAATATA
ACATGCAAGAAGTGGCTTGAAGGAAAATTCCATTTGATGGCGAAAATAAC
GATGGATGATAGATACGTTTTCTAAAAGCAACACTAAGCCATAGTTAGCT
CATTTACAATTTTATTCTACACGCGAGATTTCTCTCTGTACTGCCATTGA
AATCATCGAATTTAAAACAGATTTTACGTCTGTACCGCTATTATTTTCCA
GACAAAATGTATATATAGTTTTTGCTCAAATACAATAAATTATGTGTATC
ACTTAACTCGTTAACTCTATAAATCCGAAGTAAAAAAGTGATATATCATT
CTAAATTTTGTACCTTATATGTTTTAGGATGTATTATATATCTAGGAAAG
AGAAATCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038677XLOC_038677Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061678-exon-scaffold_36-1575043694:1036597..1036713TCONS_00061678-exon-scaffold_36-1575043694:1036597..1036713Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1035650..1035807TCONS_00061678-exon-scaffold_36-1575043694:1035650..1035807Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1034934..1035040TCONS_00061678-exon-scaffold_36-1575043694:1034934..1035040Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1033462..1033490TCONS_00061678-exon-scaffold_36-1575043694:1033462..1033490Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1032817..1032973TCONS_00061678-exon-scaffold_36-1575043694:1032817..1032973Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1031025..1031049TCONS_00061678-exon-scaffold_36-1575043694:1031025..1031049Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1030655..1030724TCONS_00061678-exon-scaffold_36-1575043694:1030655..1030724Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1030186..1030327TCONS_00061678-exon-scaffold_36-1575043694:1030186..1030327Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1029162..1029326TCONS_00061678-exon-scaffold_36-1575043694:1029162..1029326Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1028431..1028519TCONS_00061678-exon-scaffold_36-1575043694:1028431..1028519Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1026506..1026776TCONS_00061678-exon-scaffold_36-1575043694:1026506..1026776Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1575043694:1025604..1026245TCONS_00061678-exon-scaffold_36-1575043694:1025604..1026245Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1036597..1036713TCONS_00061678-exon-scaffold_36-1510915933:1036597..1036713Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1035650..1035807TCONS_00061678-exon-scaffold_36-1510915933:1035650..1035807Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1034934..1035040TCONS_00061678-exon-scaffold_36-1510915933:1034934..1035040Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1033462..1033490TCONS_00061678-exon-scaffold_36-1510915933:1033462..1033490Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1032817..1032973TCONS_00061678-exon-scaffold_36-1510915933:1032817..1032973Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1031025..1031049TCONS_00061678-exon-scaffold_36-1510915933:1031025..1031049Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1030655..1030724TCONS_00061678-exon-scaffold_36-1510915933:1030655..1030724Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1030186..1030327TCONS_00061678-exon-scaffold_36-1510915933:1030186..1030327Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1029162..1029326TCONS_00061678-exon-scaffold_36-1510915933:1029162..1029326Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1028431..1028519TCONS_00061678-exon-scaffold_36-1510915933:1028431..1028519Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1026506..1026776TCONS_00061678-exon-scaffold_36-1510915933:1026506..1026776Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1510915933:1025604..1026245TCONS_00061678-exon-scaffold_36-1510915933:1025604..1026245Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1036597..1036713TCONS_00061678-exon-scaffold_36-1491911889:1036597..1036713Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1035650..1035807TCONS_00061678-exon-scaffold_36-1491911889:1035650..1035807Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1034934..1035040TCONS_00061678-exon-scaffold_36-1491911889:1034934..1035040Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1033462..1033490TCONS_00061678-exon-scaffold_36-1491911889:1033462..1033490Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1032817..1032973TCONS_00061678-exon-scaffold_36-1491911889:1032817..1032973Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1031025..1031049TCONS_00061678-exon-scaffold_36-1491911889:1031025..1031049Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1030655..1030724TCONS_00061678-exon-scaffold_36-1491911889:1030655..1030724Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1030186..1030327TCONS_00061678-exon-scaffold_36-1491911889:1030186..1030327Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1029162..1029326TCONS_00061678-exon-scaffold_36-1491911889:1029162..1029326Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1028431..1028519TCONS_00061678-exon-scaffold_36-1491911889:1028431..1028519Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1026506..1026776TCONS_00061678-exon-scaffold_36-1491911889:1026506..1026776Clytia hemisphaericaexon
TCONS_00061678-exon-scaffold_36-1491911889:1025604..1026245TCONS_00061678-exon-scaffold_36-1491911889:1025604..1026245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1025604..1036713 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.232041	1.1513	0	1.00078	1.66136	1.15702	7.04026e-07	1.70183	2.42051	0.3865	0	2.35284	3.97711	13.0757	1.50744	1.97739	10.3839	9.9273	1.41076	6.72354	5.18227	11.2772	1.15772	0.407802	5.62517e-10	0.0761601	0.0153571	0.835883	1.27342	1.07746
Blast
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BLAST of TCONS_00061678 vs. Swiss-Prot (Human)
Match: S23A1 (Solute carrier family 23 member 1 OS=Homo sapiens GN=SLC23A1 PE=1 SV=3)

HSP 1 Score: 487.649 bits (1254), Expect = 5.626e-164
Identity = 262/562 (46.62%), Postives = 367/562 (65.30%), Query Frame = 1 
Query:   16 KEEGADEPQNTEFDVIYKVNDNPPWYLAIVLGFQQYMTMFGSTIAVPFILAGPLCIADNNLAKSELISTIFLVSGIATLIQSCLGTRLPIVQGATFSFIGPTIAILNLPEYKCPTAV----NGTVP---DYDWKIGMREIQGAIAVSSLFQVFVGCTGIIGFVMRFIGPLTVAPTIXXXXXXXXXXXXXXXXEQWGIAALTVFCIALFSQVL------------GK-----KFAVFRLFPVILAILISWALSGIIT-----AAGGYKEGSEARTDHNLEVLNQAKWIRVPYPGQWGTPTVHVAGVFGMLAGVFASMIESIGDYYACARLSGAPPPPKHAVNRGIFLEGISCVLAGLFGSGNGTTSYSENIAAIGVTKVASRRVIQIGAIFMIILSILGKFGAVFTLIPKPVIGGMFWCLFGLIVAVGLSSLQFVNLNDSRNLFVLGFSFFNGMVVPSWISANPQAIDTGVTELDQIIGVLLGTNMAVGGITACLLDNILPGSKKDRGIEAWRDNEASAEENSA---TYDLPYIQKYLDRTSWIRYVPFLPYNGNRSGTEQNN 1605
            ++     P   +FD++YK+ D PPWYL I+LGFQ Y+T F  TIAVPF+LA  LC+  +    S+LI TIF   GI TLIQ+ +G RLP+ Q + F+F+ P  AIL L  +KCP       N ++P    + W   +RE+QGAI VSS+ +V +G  G+ G ++ +IGPLTV PT++L+GL++F AAG  A   WGI+A ++  I LFSQ L            GK     +  +F++FP++LAI+  W L  ++T            G +ARTD   +++  A WIR+PYP QWG PTV  A V GM +   A +IESIGDYYACARL+GAPPPP HA+NRGIF EGI C++AGL G+GNG+TS S NI  +G+TKV SRRV+Q GA  M++L  +GKF A+F+ +P P++GGMF  LFG+I AVGLS+LQFV++N SRNLFVLGFS F G+ +P+++ +NP AI+TG+ E+DQI+ VLL T M VGG  A +LDN +PGS ++RG+  W+    +  + S+   +YD P     + R ++++Y+P  P     S + ++ 
Sbjct:   17 RDPSTPLPTEPKFDMLYKIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAEALCVGHDQHMVSQLIGTIFTCVGITTLIQTTVGIRLPLFQASAFAFLVPAKAILALERWKCPPEEEIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLLPVYRWGKGLTLLRIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPTDPKAYGFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFSSLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGAHANSDMSSSLKSYDFPIGMGIVKRITFLKYIPICPVFKGFSSSSKDQ 578
The following BLAST results are available for this feature:
BLAST of TCONS_00061678 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S23A15.626e-16446.62Solute carrier family 23 member 1 OS=Homo sapiens ... [more]
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